ID   AF110476; SV 1; linear; mRNA; STD; VRL; 1542 BP.
XX
AC   AF110476;
XX
DT   02-JAN-2000 (Rel. 62, Created)
DT   24-NOV-2000 (Rel. 65, Last updated, Version 3)
XX
DE   Raspberry ringspot virus putative coat protein mRNA, partial cds.
XX
KW   .
XX
OS   Raspberry ringspot virus
OC   Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus.
XX
RN   [1]
RP   1-1542
RX   DOI; 10.1016/S0168-1702(00)00158-1.
RX   PUBMED; 10958983.
RA   Scott S.W., Zimmerman M.T., Jones A.T., Le Gall O.;
RT   "Differences between the coat protein amino acid sequences of English and
RT   Scottish serotypes of Raspberry ringspot virus exposed on the surface of
RT   virus particles";
RL   Virus Res. 68(2):119-126(2000).
XX
RN   [2]
RP   1-1542
RA   Scott S.W., Zimmerman M.T., Jones A.T., Le Gall O.;
RT   ;
RL   Submitted (01-DEC-1998) to the INSDC.
RL   Plant Pathology and Physiology, Clemson University, P.O. Box 340377, 120
RL   Long Hall, Clemson, SC 29634-0377, USA
XX
DR   MD5; 8827b1de5a595ccc826b12d50a346072.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1542
FT                   /organism="Raspberry ringspot virus"
FT                   /strain="Himalaya (E)"
FT                   /mol_type="mRNA"
FT                   /db_xref="taxon:12809"
FT   CDS             <1..>1542
FT                   /codon_start=1
FT                   /product="putative coat protein"
FT                   /note="CP"
FT                   /db_xref="GOA:Q9QAH5"
FT                   /db_xref="InterPro:IPR005054"
FT                   /db_xref="InterPro:IPR005305"
FT                   /db_xref="InterPro:IPR005306"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:Q9QAH5"
FT                   /protein_id="AAF21931.1"
FT                   /translation="AYEVDPLHLLYYEEVTVPKDTLDGTLLARIDVRAKAATFDSAVWR
FT                   QWVRDGCLKPKIKVRITAATSCFSGIVLGACFDAYRRIPAATTKGITASLVTGLPNTVW
FT                   ATRDTSEVEWDIDLAAVCGHTFFALEDTFGYMDFLIYVLRGNEITAVADWSIYVSFHVD
FT                   WTQESMLATLIPTFVWPPKPTDISLFKEVWGPYRFTLDGTEAKESFAIMPGTAIPRGQQ
FT                   IVRTFPRVIAAHFRSWTGKIKMSIQEVSSIFLTGTYMVGVSWNATADLADIITRKHWIV
FT                   KSGENFELDLYCPYGENPTFTGLANGRPHIIVHKLGGIIGPKDSVGTFGFMIHIQGLTG
FT                   MYKNPTLHSGDRSVGSAWFRISNIVNNNLVFNIPGKIENMVAVAGNYDVTNYVNPNSLL
FT                   FSVTGLHGGVILLHITWCPNVILGEAKGTLKYMQYLYHTTTENFFGDQATLGIIDQDGF
FT                   TVDIACGNFFGATRVGLTGEIERLGIYSSNANSISEIRVSFEILSMNFYGSTIKLT"
XX
SQ   Sequence 1542 BP; 400 A; 313 C; 360 G; 469 T; 0 other;
     gcctatgagg tagacccact acatttgttg tattatgagg aagtcactgt tccgaaggat        60
     acccttgatg gtactttact ggcccggata gatgttcgag ctaaagctgc aacttttgat       120
     agtgctgtat ggcgacaatg ggttagagat ggttgtctca aacccaaaat caaggtacgc       180
     atcactgcag ccacatcgtg tttctccggt attgtactgg gtgcatgttt tgatgcatac       240
     cggagaatcc cagcagctac aacaaagggt atcaccgcat cccttgtgac aggcttgccc       300
     aataccgtct gggcaacgcg tgacacctca gaagtcgaat gggatatcga tctcgcggca       360
     gtgtgtggac atactttctt tgcgttagaa gacacctttg gatacatgga ttttttgatc       420
     tatgtactca gaggtaatga aatcaccgct gttgctgatt ggtcaatata tgtttccttt       480
     catgttgatt ggacacagga aagtatgttg gccacactta tccctacttt tgtatggccc       540
     ccaaagccga ccgatatatc tctttttaaa gaagtgtggg ggccataccg ttttacgctg       600
     gatggtaccg aggccaaaga aagttttgct ataatgcccg gtacagctat tccccgtggg       660
     cagcagattg tgcgcacttt cccacgcgtt attgccgcac acttccgatc atggactggg       720
     aagattaaaa tgtccattca ggaggtgtct tccatctttc tgactggaac atatatggtt       780
     ggtgtgtcct ggaatgccac tgcagatctt gctgatatta tcactcggaa gcactggatt       840
     gtcaaatccg gtgaaaattt tgagcttgat ctgtattgtc cctatggtga aaaccctacc       900
     ttcacaggcc tggccaatgg tagaccacat atcattgtgc acaagcttgg gggaatcatc       960
     ggccctaagg attccgtagg aacgtttgga tttatgatac acatccaagg tctaactggt      1020
     atgtataaaa atcctacgtt gcatagcggt gatcgttctg tgggaagtgc ctggttccgt      1080
     atttccaata tcgtaaataa caacttggta tttaatatac caggtaaaat tgaaaatatg      1140
     gttgcggttg ctgggaatta tgatgtcacc aattatgtta atccgaatag tttgttgttt      1200
     tctgttactg gattgcatgg tggtgttata cttctccata ttacatggtg cccaaatgtg      1260
     attcttggtg aagcaaaagg tacattgaaa tatatgcaat atctgtacca cacaaccacc      1320
     gaaaatttct tcggagatca ggcaacactt ggaattatcg atcaggatgg tttcacggtt      1380
     gatattgcct gtggcaattt ctttggtgcc acaagggttg ggctaactgg ggaaattgaa      1440
     aggcttggta tttacagttc gaatgccaat tccatatctg aaattagggt ttcttttgaa      1500
     atactatcca tgaattttta tggtagtacc atcaaactga cg                         1542
//