ID AF110189; SV 1; linear; genomic DNA; STD; VRL; 2603 BP. XX AC AF110189; XX DT 06-APR-1999 (Rel. 59, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 4) XX DE Bean calico mosaic virus DNA A coat protein (AV1), replication enhancer DE protein (AC3), transcription activator protein (AC2), replication initiator DE protein (AC1), and AC4 (AC4) genes, complete cds. XX KW . XX OS Bean calico mosaic virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2603 RX PUBMED; 18944770. RA Brown J.K., Ostrow K.M., Idris A.M., Stenger D.C.; RT "Biotic, molecular, and phylogenetic characterization of bean calico mosaic RT virus, a distinct begomovirus species with affiliation in the squash leaf RT curl virus cluster"; RL Phytopathology 89(4):273-280(1999). XX RN [2] RP 1-2603 RA Stenger D.C., Brown J.K.; RT ; RL Submitted (30-NOV-1998) to the INSDC. RL USDA-ARS, University of Nebraska, Lincoln, 344 Keim Hall, University of RL Nebraska, Lincoln, Lincoln, NE 68583, USA XX DR MD5; 7f648be721a98ee8fce8329d800a97bc. XX FH Key Location/Qualifiers FH FT source 1..2603 FT /organism="Bean calico mosaic virus" FT /segment="DNA A" FT /mol_type="genomic DNA" FT /note="derived from full-length infectious clone FT pBCMoV-C58" FT /db_xref="taxon:31602" FT gene 188..937 FT /gene="AV1" FT CDS 188..937 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:Q9WF49" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q9WF49" FT /protein_id="AAD22939.1" FT /translation="MPKRDAPWRNMAGTSKVTRSSNYSPRGGPKFNKADAWVNRPMYRK FT PRIYRTLRGPDVPRGCEGPCKVQSYEQRHDVSHVGKVMCISDITRGNGITHRVGKRFCV FT KSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPLDFGQVFNMFDNEPSTATVKN FT DLRDRFQVMHKFYGKVTGGQYASNEQALVKRFWKVNNYVVYNHQEAGKYENHTENALLL FT YMACTHASNPVYATLKIRIYFYDSITN" FT gene complement(934..1332) FT /gene="AC3" FT CDS complement(934..1332) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /note="Ren" FT /db_xref="GOA:Q9WF50" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q9WF50" FT /protein_id="AAD22942.1" FT /translation="MDSRTGEFITAAQAENSVFIWEVPNPLYFKIYTIEDPMYTRTRIY FT HIQIRFNYNLRKSLNLHKAFLNFQIWTTSVQASGTTYLQRFKYLVLLYLDRIGVVGINN FT VIRAVRFATDKPYVNYVIENHSIKFKYY" FT gene complement(1073..1597) FT /gene="AC2" FT CDS complement(1073..1597) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /note="TrAP" FT /db_xref="GOA:Q9WF51" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q9WF51" FT /protein_id="AAD22941.1" FT /translation="MESRFKLKAGYHQSCCAIQERGPVIKISSTKRKTHRLKIGQSKML FT NSSSSTPPSIKAQHRIAKRRAIRRRRIDLNCGCSIFLHINCADNGFTHRGVHHCGSSRE FT FRFYLGGSKSPLFQDIHDRGSNVHKDENIPHPNPVQLQPKEVTESTQSFPEFPNLDDVS FT SSFWNDLFTEI" FT gene complement(1410..2459) FT /gene="AC1" FT CDS complement(1410..2459) FT /codon_start=1 FT /gene="AC1" FT /product="replication initiator protein" FT /note="Rep" FT /db_xref="GOA:Q9WF52" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q9WF52" FT /protein_id="AAD22940.1" FT /translation="MPRNPSSFRITARNIFLTYPQCDINKDEALRLLQELPWSVVKPTY FT IRVAREEHSDGFPHLHCLIQLSGKSNIKDVRFFDLTHPRRSANFHPNVQAAKDTNAVKN FT YITKEGDYCESGEYKVSGSTKSNKDDVYHNAVNAGSIKEALDIIRAGDPKTFIVNYHNI FT KANIERLFKKAPEPWVPPFQLSSFTFVPDEMQEWADDYFGRGAAARAERPISIIVEGGS FT RTGKTMWARALGPHNYLSGHLDFNSSVYSNEVEYNVIDDISPQYLKLKHWKELIGAQRD FT WQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLDKEENASLKNWTIQNAKFIFLNTP FT LYQSTAQDR" FT misc_feature complement(1468) FT /gene="AC2" FT /note="alternative start codon; corresponds to AC2 start FT codon conserved in most begomoviruses" FT gene complement(2051..2380) FT /gene="AC4" FT CDS complement(2051..2380) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /note="putative" FT /db_xref="UniProtKB/TrEMBL:Q9WF53" FT /protein_id="AAD22943.1" FT /translation="MKLFACFKNCHGQSSNQHISESPERNIQMDSLIYTVSFNSQASPT FT SRMLDFSTLLTQEGLPIFTQTFRQPRTPTQSRTTSPKKVIIVNPGNIRCLAQQNQTRTT FT YTTTQ" XX SQ Sequence 2603 BP; 668 A; 528 C; 593 G; 814 T; 0 other; accggatggc cgcgattttt ttggtgtcct ctctctcgct tggtccacgt gtcccatacc 60 cgtacgtgga ccacccatcg tccaatcata acgcgcctgc tgagtttaaa tatttaaaac 120 ttactcacaa agttcgatga ggataaatac gttggacgac tcccgatatt ttcgtcttta 180 attcgaaatg cctaagcggg atgccccatg gcgtaacatg gcggggacct caaaggtaac 240 ccgttctagc aattattctc ctcgcggtgg tcccaaattc aacaaggccg atgcatgggt 300 taacaggccc atgtatagga agcccagaat ttatcggaca ttgagaggcc ccgatgttcc 360 aagagggtgt gaaggacctt gtaaggttca gtcttacgag cagagacatg atgtttctca 420 tgtcgggaag gttatgtgca tttctgatat tacccgtggt aacggtatta cccaccgcgt 480 tggtaagcgt ttttgtgtta agtccgtgta tattttaggt aagatatgga tggacgaaaa 540 tatcaagtta aagaaccaca cgaacagtgt catgttctgg ttggttagag atcgtagacc 600 atatggtact cctcttgatt ttggccaagt gttcaacatg tttgacaacg aacctagtac 660 tgctactgtg aagaatgatt tgcgtgatcg ttttcaagtc atgcataaat tttatggtaa 720 ggttacaggt ggacaatatg ccagcaacga acaagcactg gtgaagcgtt tttggaaggt 780 taataattat gttgtctaca accatcaaga agctgggaaa tacgaaaatc atactgaaaa 840 tgcattatta ttgtatatgg catgtactca tgcttctaat cctgtgtatg ctacattgaa 900 aattcggatc tatttttacg attcgataac caattaataa tatttgaatt ttattgaatg 960 attttctatt acataattta catatggttt gtctgttgcg aaacgaacag ctcttataac 1020 gttattaatt ccaacaacac ctattctgtc tagatacaat aaaactaaat acttaaatct 1080 ctgtaaataa gtcgttccag aagcttgaac tgacgtcgtc cagatttgga aattcaggaa 1140 agctttgtgt agattcagtg acttccttag gttgtaattg aaccggattt ggatgtggta 1200 tattctcgtc cttgtgtaca ttggatcctc tatcgtgtat atcttgaaat agaggggatt 1260 tggaacctcc caaataaaaa cggaattctc tgcttgagcc gcagtgatga actcccctgt 1320 gcgtgaatcc attatcagcg cagttgatgt gtagaaatat ggaacagccg cagttcaaat 1380 ctatccgtcg tcgtcgaata gctcttcttt tagcgatcct gtgctgtgct ttgatagagg 1440 ggggtgttga ggaagatgaa tttagcattt tggattgtcc aatttttaag cgatgcgttt 1500 tcctctttgt cgaggaaatc tttataactg gccccctctc ctggattgca cagcacgatt 1560 gatggtatcc cgcctttaat ttgaaccggc tttccatatt tgcagttgga ttgccagtct 1620 ctttgggccc caatcaattc tttccagtgc tttagcttta ggtattgcgg actgatgtca 1680 tcgatgacgt tatactcaac ctcgttagag tacactgaag aattgaaatc caggtgtcca 1740 ctaagataat tgtgtggtcc taatgcacga gcccacatgg tttttccggt acgtgaacca 1800 ccttcgacga tgatactaat aggtctctcc gcccgcgcag cggcacccct tccgaaatag 1860 tcgtccgccc actcttgcat ctcatctgga acgaacgtga aggaagagag ttgaaacgga 1920 ggaacccatg gttctggagc ctttttaaag aggcgttcga tgttggcctt tatgttatgg 1980 tagttgacga tgaatgtctt tggatctccg gctctaataa tgtctagcgc ctctttaata 2040 cttcctgcat ttactgcgtt gtggtatacg tcgtccttgt ttgattttgt tgagccagac 2100 accttatatt ccccggattc acaataatca ccttctttgg tgatgtagtt cttgactgcg 2160 ttggtgtcct tggctgcctg aacgtttggg tgaaaattgg cagaccttct tgggtgagta 2220 aggtcgaaaa atctaacatc cttgatgttg gacttgcctg agagttgaat gagacagtgt 2280 agatgaggga atccatctga atgttcctct cgggcgactc ggatatatgt tggtttgacg 2340 actgaccatg gcagttcttg aagcaagcga agagcttcat ccttgtttat gtcgcactgt 2400 gggtatgtta agaagatgtt tcttgcagtt atacgaaaag aactggggtt ccgtggcata 2460 tttgtaaata tgagccagga caccaggggg gagctttctc caaaacctat tgtttttggt 2520 gtcctggtgt cccatatata ctacaagtct ctttaggcct ctttaggaca ccatgggcaa 2580 aatcggccat ccgaaataat att 2603 //