ID AF109397; SV 1; circular; genomic DNA; STD; VRL; 1768 BP. XX AC AF109397; XX DT 18-DEC-1998 (Rel. 58, Created) DT 14-NOV-2006 (Rel. 89, Last updated, Version 5) XX DE Bovine circovirus, complete genome. XX KW . XX OS Bovine circovirus OC Viruses; Circoviridae; Circovirus. XX RN [1] RP 1-1768 RA Hamel A.L., Nayar G.P.S.; RT "Nucleotide sequence of a circovirus detected in cattle with various RT clinical syndromes"; RL Unpublished. XX RN [2] RP 1-1768 RA Hamel A.L., Nayar G.P.S.; RT ; RL Submitted (27-NOV-1998) to the INSDC. RL Virology Laboratory, Veterinary Diagnostic Laboratory, Manitoba RL Agriculture, 545 University Crescent, Winnipeg, Manitoba R3T 5S6, Canada XX RN [3] RC Sequence update by submitter RP 1-1768 RA Hamel A.L., Nayar G.P.S.; RT ; RL Submitted (02-FEB-1999) to the INSDC. RL Virology Laboratory, Veterinary Diagnostic Laboratory, Manitoba RL Agriculture, 545 University Crescent, Winnipeg, Manitoba R3T 5S6, Canada XX DR MD5; 6bee005051f9d6f4b972081c3997e890. DR EuropePMC; PMC227037; 12760475. DR EuropePMC; PMC86951; 10878032. XX CC On Feb 2, 1999 this sequence version replaced gi:4028609. XX FH Key Location/Qualifiers FH FT source 1..1768 FT /organism="Bovine circovirus" FT /mol_type="genomic DNA" FT /note="BCV sequence was obtained from several overlapping FT PCRs using DNA extracted from various tissues from cattle; FT similar to Porcine circovirus sequence presented in GenBank FT Accession Number AF027217" FT /db_xref="taxon:85542" FT stem_loop join(1750..1768,1..13) FT rep_origin join(1762..1768,1..2) FT /note="putative; similar to the nonanucleotide motif of FT Porcine circovirus presented in GenBank Accession Numbers FT AF027217 and U49186" FT repeat_region 13..35 FT /rpt_type=TANDEM FT /rpt_unit_range=13..18 FT CDS 51..995 FT /codon_start=1 FT /product="putative Rep and coat protein" FT /note="ORF-1; similar to Porcine circovirus ORF1 encoded by FT the sequence presented in GenBank Accession Number FT AF027217." FT /db_xref="GOA:Q9YJ73" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR003365" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q9YJ73" FT /protein_id="AAD11928.1" FT /translation="MPSKKNGRSGPQPHKRWVFTLNNPSEDERKKIRELPISLFDYFIV FT GEEGNEEGRTPHLQGFANFVKKQTFNKVKWYLGARCHIEKAKGTDQQNKEYCSKEGNLL FT IECGAPRSQGQRSDLSTAVSTLLESGSLVTVAEQHPVTFVRNFRGLAELLKVSGKMQKR FT DWKTNVHVIVGPPGCGKSKWAANFADPETTYWKPPRNKWWDGYHGEEVVVIDDFYGWLP FT WDDLLRLCDRYPLTVETKGGTVPFLARSILITSNQTPLEWYSSTAVPAVEALYRRITSL FT VFWKNATEQSTEEGGQFVTLSPPCPEFPYEINY" FT regulatory 327..332 FT /regulatory_class="polyA_signal_sequence" FT CDS complement(357..671) FT /codon_start=1 FT /product="ORF-3" FT /note="similar to Porcine circovirus ORF-3 encoded by the FT sequence presented in GenBank Accession Number AF027217." FT /db_xref="InterPro:IPR008500" FT /db_xref="UniProtKB/TrEMBL:Q77S15" FT /protein_id="AAD11930.1" FT /translation="MVTIPPLVSRWFPVCGFRVCKISSPFAFTTPRWPHNDVYIGLPIT FT LLHFPAHFQKFSQPAEISDKRYRVLLCNGHQTPALQQGTHSSRQVTPLSLRSRSSTFNK FT " FT CDS complement(386..565) FT /codon_start=1 FT /product="ORF-4" FT /note="similar to Porcine circovirus ORF-4 encoded by the FT sequence presented in GenBank Accession Number AF027217." FT /db_xref="InterPro:IPR009757" FT /db_xref="UniProtKB/TrEMBL:Q77S16" FT /protein_id="AAD11931.1" FT /translation="MTCTLVFQSRFCIFPLTFKSSASPRKFLTNVTGCCSATVTRLPLS FT NKVLTAVDRSLRCP" FT CDS 553..732 FT /codon_start=1 FT /product="ORF-12" FT /db_xref="InterPro:IPR009527" FT /db_xref="UniProtKB/TrEMBL:Q9YIU3" FT /protein_id="AAD11927.1" FT /translation="MYTSLWGHLGVVKANGLLILQTRKPHTGNHLETSGGMVTMVKKWL FT LLMTFMAGCRGMIY" FT CDS complement(688..753) FT /codon_start=1 FT /product="ORF-8" FT /db_xref="UniProtKB/TrEMBL:Q77S14" FT /protein_id="AAD11935.1" FT /translation="MDIDHTVSVDHPTAASHKSHQ" FT regulatory 983..988 FT /regulatory_class="polyA_signal_sequence" FT CDS complement(989..1033) FT /codon_start=1 FT /product="ORF-11" FT /db_xref="UniProtKB/TrEMBL:Q77S13" FT /protein_id="AAD11937.1" FT /translation="MNNKNHYEVIKKTQ" FT CDS 1016..1177 FT /codon_start=1 FT /product="ORF-5" FT /db_xref="InterPro:IPR009373" FT /db_xref="UniProtKB/TrEMBL:Q77S12" FT /protein_id="AAD11932.1" FT /translation="MVFIIHLGFKWGVFKIKFSELYIHGYTDIVVLVVFTVFERSAEAY FT VVHISRGL" FT regulatory complement(1022..1027) FT /regulatory_class="polyA_signal_sequence" FT CDS complement(1256..1735) FT /codon_start=1 FT /product="ORF-2" FT /note="similar to Porcine circovirus ORF-2 encoded by the FT sequence presented in GenBank Accession Number AF027217." FT /db_xref="GOA:Q9YR17" FT /db_xref="InterPro:IPR003383" FT /db_xref="InterPro:IPR038652" FT /db_xref="UniProtKB/TrEMBL:Q9YR17" FT /protein_id="AAD11929.1" FT /translation="MTYPRRRYRRRRTRPRSHLGQILRRRPWLVHPRHRYRWRRKNGIF FT NTRLSRTFGYTVKATTVRTPSWAVDMMRFNIDDFVPPGGGTNKISIPFEYYRIRKVKVE FT FWPCSPITQGDRGVGSTAVILDDNFVTKATALTYDPYVNYSSRHTIPQPFSYHSR" FT CDS complement(1522..1611) FT /codon_start=1 FT /product="ORF-6" FT /db_xref="InterPro:IPR008484" FT /db_xref="UniProtKB/TrEMBL:Q77S11" FT /protein_id="AAD11933.1" FT /translation="MASSTPASPAPSDILSRLPQSERPPGRWT" FT CDS 1524..1631 FT /codon_start=1 FT /product="ORF-10" FT /db_xref="InterPro:IPR009762" FT /db_xref="UniProtKB/TrEMBL:Q77S10" FT /protein_id="AAD11936.1" FT /translation="MSTAQEGVLTVVALTVYPKVRERRVLKMPFFLLQR" FT CDS 1682..1741 FT /codon_start=1 FT /product="ORF-7" FT /db_xref="UniProtKB/TrEMBL:Q9YIT3" FT /protein_id="AAD11934.1" FT /translation="MAAGAGPSSAVTPPWIRHS" XX SQ Sequence 1768 BP; 452 A; 362 C; 493 G; 461 T; 0 other; accagcgcac ttcggcagcg gcagcacctc ggcagcacct cagcagcaac atgcccagca 60 agaagaatgg aagaagcgga ccccaaccac ataaaaggtg ggtgttcacg ctgaataatc 120 cttccgaaga cgagcgcaag aaaatacggg agctcccaat ctccctattt gattatttta 180 ttgttggcga ggagggtaat gaggaaggac gaacacctca cctccagggg ttcgctaatt 240 ttgtgaagaa gcaaactttt aataaagtga agtggtattt gggtgcccgc tgccacatcg 300 agaaagccaa aggaactgat cagcagaata aagaatattg cagtaaagaa ggcaacttac 360 ttattgaatg tggagctcct cgatctcaag gacaacggag tgacctgtct actgctgtga 420 gtaccttgtt ggagagcggg agtctggtga ccgttgcaga gcagcaccct gtaacgtttg 480 tcagaaattt ccgcgggctg gctgaacttt tgaaagtgag cgggaaaatg cagaagcgtg 540 attggaagac caatgtacac gtcattgtgg ggccacctgg gtgtggtaaa agcaaatggg 600 ctgctaattt tgcagacccg gaaaccacat actggaaacc acctagaaac aagtggtggg 660 atggttacca tggtgaagaa gtggttgtta ttgatgactt ttatggctgg ctgccgtggg 720 atgatctact gagactgtgt gatcgatatc cattgactgt agagactaaa ggtggaactg 780 tacctttttt ggcccgcagt attctgatta ccagcaatca gaccccgttg gaatggtact 840 cctcaactgc tgtcccagct gtagaagctc tctatcggag gattacttcc ttggtatttt 900 ggaagaatgc tacagaacaa tccacggagg aagggggcca gttcgtcacc ctttcccccc 960 catgccctga atttccatat gaaataaatt actgagtctt ttttatcact tcgtaatggt 1020 ttttattatt catttagggt ttaagtgggg ggtctttaag attaaattct ctgaattgta 1080 catacatggt tacacggata ttgtagtcct ggtcgtattt actgttttcg aacgcagtgc 1140 cgaggcctac gtggtccaca tttctagagg tttgtagcct cagccaaagc tgattccttt 1200 tgttatttgg ttggaagtaa tcaatagtgg agtcaagaac aggtttgggt gtgaattaac 1260 gggagtggta ggagaagggt tgggggattg tatggcggga ggagtagttt acatatgggt 1320 cataggttag ggctgtggcc tttgttacaa agttatcatc tagaataaca gcagtggagc 1380 ccactcccct atcaccctgg gtgatggggg agcagggcca gaattcaacc ttaacctttc 1440 ttattctgta gtattcaaag ggtatagaga ttttgttggt cccccctccc gggggaacaa 1500 agtcgtcaat attaaatctc atcatgtcca ccgcccagga gggcgttctg actgtggtag 1560 ccttgacagt atatccgaag gtgcgggaga ggcgggtgtt gaagatgcca tttttccttc 1620 tccaacggta gcggtggcgg gggtggacga gccaggggcg gcggcggagg atctggccaa 1680 gatggctgcg ggggcgggtc cttcttctgc ggtaacgcct ccttggatac gtcatagctg 1740 aaaacgaaag aagtgcgctg taagtatt 1768 //