ID AF105975; SV 1; circular; genomic DNA; STD; VRL; 2793 BP. XX AC AF105975; XX DT 12-MAR-1999 (Rel. 59, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 6) XX DE Tomato yellow leaf curl virus-Mild[Portugal], complete genome. XX KW . XX OS Tomato yellow leaf curl virus - Mild[Portugal] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2793 RX PUBMED; 11038394. RA Navas-Castillo J., Sanchez-Campos S., Noris E., Louro D., Accotto G.P., RA Moriones E.; RT "Natural recombination between Tomato yellow leaf curl virus-is and Tomato RT leaf curl virus"; RL J. Gen. Virol. 81(Pt 11):2797-2801(2000). XX RN [2] RP 1-2793 RA Accotto G.P., Louro D., Moriones E., Navas-Castillo J., Noris E.; RT ; RL Submitted (11-NOV-1998) to the INSDC. RL Istituto di Fitovirologia, Consiglio Nazionale Ricerche, Strada delle Cacce RL 73, Torino 10135, Italy XX DR MD5; b78937b5c8d24d1b577786970d6ce192. DR EuropePMC; PMC156158; 12767999. DR EuropePMC; PMC2224568; 17977971. DR EuropePMC; PMC6362282; 30718735. XX FH Key Location/Qualifiers FH FT source 1..2793 FT /organism="Tomato yellow leaf curl virus - Mild[Portugal]" FT /strain="Portugal" FT /mol_type="genomic DNA" FT /clone="pPort2" FT /note="infectious; produces vector-transmissible virions FT acronym: TYLCV-Is" FT /db_xref="taxon:270153" FT gene 157..507 FT /gene="V2" FT CDS 157..507 FT /codon_start=1 FT /gene="V2" FT /product="V2" FT /db_xref="GOA:Q77SC4" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q77SC4" FT /protein_id="AAD17966.1" FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLIRDL FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV FT PEAQNIQNVSKP" FT gene 317..1093 FT /gene="V1" FT CDS 317..1093 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:Q9YL29" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q9YL29" FT /protein_id="AAD17967.1" FT /translation="MSKRPGDIIISTPASKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGNSPMDFGQVFNMFDN FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFRINSHVTYNHQEAAKYE FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN" FT gene complement(1090..1494) FT /gene="C3" FT CDS complement(1090..1494) FT /codon_start=1 FT /gene="C3" FT /product="C3" FT /db_xref="GOA:Q77SC3" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q77SC3" FT /protein_id="AAD17970.1" FT /translation="MDSRTGELITAPQAENGVFIWEINNPLYFKITEHSQRPFLMNHDI FT ISIQIRFNHNIRKVLGIHKCFLNFRIWTTLQPQTGRFLRVFRHQVLKYLDSIGVISINN FT VIRAVDHVLYDVLEKTINVTETHDIKYKFY" FT gene complement(1235..1642) FT /gene="C2" FT CDS complement(1235..1642) FT /codon_start=1 FT /gene="C2" FT /product="C2" FT /db_xref="GOA:Q9YL28" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q9YL28" FT /protein_id="AAD17969.1" FT /translation="MQPSSPSTSHCSQVSIKVQHKIAKKKPIRRKRVDLDCGCSYYLHL FT NCNNHGFTHRGTHHCSSSREWRFYLGDKQSPLFQDNRTQPEAISNEPRHHFHSDKIQPQ FT HQEGIGDSQMFSQLPNLDDITASDWSFLKSI" FT gene complement(1551..2630) FT /gene="C1" FT CDS complement(1551..2630) FT /codon_start=1 FT /gene="C1" FT /product="Rep" FT /db_xref="GOA:Q9YL27" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q9YL27" FT /protein_id="AAD17968.1" FT /translation="MAPPKRFQINCKNYFLTYPKCSLTKEEALSHLKDLETPTNKKYIK FT VCRELHENGEPHLHVLIQFEGKFKCQNQRFFDLVSPSRAAHFHPNIQGAKSSSDVKSYV FT DKDGDTVDWGEFQIDGRSARGGQQSANDAYAAALNSGSKSEALRIIKELIPKDYILQFH FT NLNSNLDRIFQEPPAPYISPFLSSSFNQVPDELEVWVSENVVSSAARPWRPNSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNATFVTLYEPL FT FASINQGPTQDSQEETNKA" FT gene complement(2171..2473) FT /gene="C4" FT CDS complement(2171..2473) FT /codon_start=1 FT /gene="C4" FT /product="C4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q9YL26" FT /protein_id="AAD17971.1" FT /translation="MGNHISMCLSNLKGNSSAKISDSSTWYPQAGQHISIQTFRELNPV FT QTSSLMSIRTETPSTGVSFRSTDDLHVGVSSQPMTLTPQLLTQAVSRRLLESLKN" XX SQ Sequence 2793 BP; 765 A; 546 C; 610 G; 872 T; 0 other; taatattacc ggatggccgc gccttttgct tttatgcctg gtccccacga gggttccaca 60 gacgtcacta tcaaccaatc aaattgcatc ctcaaacgtt agataagtgt tcatttgtct 120 ttatatactt ggtccccaag tattttgtct tgcaatatgt gggatccact tctaaatgaa 180 tttcctgaat ctgttcacgg atttcgttgt atgttagcta ttaaatattt gcagtccgtt 240 gaggaaactt acgagcccaa tacattgggc cacgatttaa ttagggatct tatatctgtt 300 gtaagggccc gtgactatgt cgaagcgacc aggcgatata atcatttcca cgcccgcctc 360 gaaggttcgc cgaaggctga acttcgacag cccatacagc agccgtgctg ctgtccccat 420 tgtccaaggc acaaacaagc gacgatcatg gacgtacagg cccatgtacc ggaagcccag 480 aatatacaga atgtatcgaa gccctgatgt tccccgtgga tgtgaaggcc catgtaaagt 540 acagtcttat gagcaacggg atgatattaa gcatactggt attgttcgtt gtgttagtga 600 tgttactcgt ggatctggaa ttactcacag agtgggtaag aggttctgtg ttaaatcgat 660 atatttttta ggtaaagtct ggatggatga aaatatcaag aagcagaatc acactaatca 720 ggtcatgttc ttcttggtcc gtgatagaag gccctatgga aacagcccaa tggattttgg 780 acaggttttt aatatgttcg ataatgagcc cagtaccgca acagtgaaga atgatttgcg 840 ggataggttt caagtgatga ggaaatttca tgctacagtt attggtgggc cctctggaat 900 gaaggaacag gcattagtta agagattttt tagaattaac agtcatgtaa cttataatca 960 tcaggaggca gccaagtacg agaaccatac tgaaaacgcc ttgttattgt atatggcatg 1020 tacgcatgcc tctaatccag tgtatgcaac tatgaaaata cgcatctatt tctatgattc 1080 aatatcaaat taataaaatt tatattttat atcatgagtt tctgttacat ttattgtctt 1140 ttcaagtaca tcatacaata catgatcaac tgctctgatt acattgttaa ttgaaattac 1200 accaatacta tctaaatact taagaacttg atgtctaaat actcttaaga aacgaccagt 1260 ctgaggctgt aatgtcgtcc aaattcggaa gttgagaaaa catttgtgaa tccccaatac 1320 cttcctgatg ttgtggttga atcttatctg aatggaaatg atgtcgtggt tcattagaaa 1380 tggcctctgg ctgtgttctg ttatcttgaa atagagggga ttgtttatct cccagataaa 1440 aacgccattc tctgcttgag gagcagtgat gagttcccct gtgcgtgaat ccatgattgt 1500 tgcagttgag gtggaggtag tatgagcagc cacagtctag gtctacacgc ttacgcctta 1560 ttggtttctt cttggctatc ttgtgttgga ccttgattga tacttgcgaa cagtggctcg 1620 tagagggtga cgaaggttgc attcttgaga gcccaatttt tcaaggatat gtttttttct 1680 tcgtctagat attccctata tgaggaggta ggtcctggat tgcagaggaa gatagtggga 1740 attccccctt taatttgaat gggcttcccg tactttgtgt tgctttgcca gtccctctgg 1800 gcccccatga attccttgaa gtgctttaaa taatgcgggt ctacgtcatc aatgacgttg 1860 taccacgcat cattactgta cacctttgga cttaggtcta gatgtccaca taaataatta 1920 tgtggaccta gagacctggc ccacattgtt ttgcctgttc tgctatcacc ctcaatgaca 1980 atactattag gtctccatgg ccgcgcagcg gaagacacga cgttctcgga cacccatact 2040 tcaagttcat ctggaacttg attaaaagat gaagataaaa agggagaaat ataaggagcc 2100 ggaggctcct gaaaaattct atctaaatta ctatttaaat tatgaaattg taaaatataa 2160 tctttcggta ttaattcttt aatgattcta agagcctccg acttactgcc tgagttaaga 2220 gctgcggcgt aagcgtcatt ggctgactgc tgacccccac gtgcagatcg tccgtcgatc 2280 tgaaactcac cccagtcgac ggtgtctccg tccttatcga cataagactt gacgtctgaa 2340 ctggatttag ctccctgaat gtttggatgg aaatgtgctg ccctgcttgg ggataccagg 2400 tcgaagaatc gctgattttg gcacttgaat ttcccttcaa attggataag cacatggaga 2460 tgtggttccc cattctcgtg gagttctctg caaactttga tgtatttttt atttgtcggg 2520 gtttctaggt cttttaaatg ggaaagtgct tcttctttcg ttaaggagca cttaggatat 2580 gtgaggaaat aatttttgca atttatttgg aagcgcttag ggggagccat atggtcaatg 2640 agtaccgatt gaccaagatt tttacactta tccctggtgt atcggtactc aatatatagt 2700 gagtaccaaa tggcattttg gtaattttgt aaaagtacat tgcaattcaa aattcaaaat 2760 ttaaaaatca aatcattaaa gcggccatcc gta 2793 //