ID   AF103992; SV 1; linear; genomic RNA; STD; VRL; 2216 BP.
XX
AC   AF103992;
XX
DT   12-MAR-1999 (Rel. 59, Created)
DT   28-SEP-1999 (Rel. 61, Last updated, Version 2)
XX
DE   Cucumber mosaic virus RNA3 strain SO 3a protein and coat protein genes,
DE   complete cds.
XX
KW   .
XX
OS   Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC   Viruses; Riboviria; Bromoviridae; Cucumovirus.
XX
RN   [1]
RP   1-2216
RA   Saitoh H., Fujiwara M., Kobori T., Ohki S.T., Osaki T.;
RT   "Nucleotide Sequence Analysis for RNA 3 of pepo-, SO- and MY17-Strains of
RT   Cucumber Mosaic Virus and its Comparison with Y-Strain";
RL   Bull. Osaka Prefect. Univ., Ser. B Agric. Life Sci. 51:33-37(1997).
XX
RN   [2]
RP   1-2216
RA   Saitoh H., Fijiwara M., Kobori T., Ohki S.T., Osaki T.;
RT   "Comparison of RNA 3 Sequence among Y-, pepo-, SO- and MY17-Strains of
RT   Cucumber Mosaic Virus";
RL   Nippon Shokubutsu Byori Gakkaiho 65:0(1998).
XX
RN   [3]
RP   1-2216
RA   Saitoh H., Fijiwara M., Kobori T., Ohki S.T., Osaki T.;
RT   ;
RL   Submitted (04-NOV-1998) to the INSDC.
RL   College of Agriculture, Osaka Prefecture University, Gakuen-cho, Sakai
RL   599-8531, Japan
XX
DR   MD5; 65709bf3d983f093e168bb8bc7e1d2da.
DR   EuropePMC; PMC3550734; 23637513.
DR   RFAM; RF01084; TLS-PK3.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2216
FT                   /organism="Cucumber mosaic virus"
FT                   /chromosome="RNA3"
FT                   /strain="SO"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12305"
FT   CDS             121..960
FT                   /codon_start=1
FT                   /product="3a protein"
FT                   /note="movement protein"
FT                   /db_xref="InterPro:IPR000603"
FT                   /db_xref="UniProtKB/TrEMBL:Q787R2"
FT                   /protein_id="AAD17926.1"
FT                   /translation="MAFQGTSRTLTQQSSAATSDDLQKILFSPEAIKKMATECDLGRHH
FT                   WMRADNAISVRPLVPEVTHGRIASFFKSGYDVGELCSKGYMSVPQVLCAVTRTVSTDAE
FT                   GSLRIYLADLGDKELSPIDGQCVSLHNHDLPALVSFQPTYDCPMETVGNRKRCFAVVIE
FT                   RHGYIGYTGTTASVCSNWQARFSSKNNNYTHIAAGKTLVLPFNRLAEQTKPSAVARLLK
FT                   SQLNNIESSQYLLTNAKINQNARSESEELNVESPPAAIGSSSASRSEAFRPQVVNGL"
FT   CDS             1258..1914
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q9YJR3"
FT                   /db_xref="InterPro:IPR000247"
FT                   /db_xref="InterPro:IPR023800"
FT                   /db_xref="InterPro:IPR037137"
FT                   /db_xref="UniProtKB/TrEMBL:Q9YJR3"
FT                   /protein_id="AAD17927.1"
FT                   /translation="MDKSESTSAGRNRRRRPRRGSRSAPSSADANFRVLSQQLSRLNKT
FT                   LSAGRPTINHPTFVGSERCKPGYTFTSITLKPPKIDRGSYYGKRLLLPDSVTEYDKKLV
FT                   SRIQIRVNPLPKFDSTVWVTVRKVPASSDLSVAAISAMFADGASPVLVYQYAASGVQAN
FT                   NKLLYDLSAMRADIGDMRKYAVLVYSKDDALETDELVLHVDVEHQRIPTSGVLPV"
XX
SQ   Sequence 2216 BP; 518 A; 522 C; 525 G; 651 T; 0 other;
     gtaatcttac cactgtgtgt gtgcgtgtgt gtgtgtcgag tcgtgttgtc cgcacatttg        60
     agtcgtgttg tccgcacatt ttattttatt ctttgtacag tgtgttagat ttcccgaggc       120
     atggctttcc aaggtaccag taggacttta actcaacagt cctcagcggc tacgtctgac       180
     gatcttcaaa agatattatt tagccctgaa gccattaaga aaatggctac tgagtgtgac       240
     ctaggccggc atcattggat gcgcgctgat aatgctattt cagtccggcc cctcgttccc       300
     gaagtaaccc acggtcgtat tgcttctttc tttaaatctg gatatgatgt tggtgaatta       360
     tgctcaaaag gatacatgag cgtccctcaa gtgttatgtg ctgttactcg aacggtttcc       420
     actgatgctg aagggtcctt gagaatttac ttagctgatc taggtgacaa ggagttatcc       480
     cctatagatg ggcaatgcgt ttcgttacat aaccatgatc ttcccgcttt ggtgtctttc       540
     caaccgacgt atgactgtcc tatggaaaca gttgggaatc gcaagcggtg ttttgctgtc       600
     gttatcgaaa gacatggtta cattgggtat accggcacca cagctagcgt gtgtagtaat       660
     tggcaagcaa ggttttcttc taagaataac aactacactc atatcgcagc tgggaagact       720
     ctagtactgc ctttcaacag attagctgag caaacaaaac cgtcagctgt cgctcgcctg       780
     ttgaagtcgc aattgaacaa cattgaatct tcgcaatatc tgttaacgaa cgcgaagatt       840
     aatcaaaatg cgcgcagtga gtccgaggaa ttaaatgttg agagccctcc cgccgcaatc       900
     gggagttctt ccgcgtcccg ctccgaagcc ttcagaccgc aggtggttaa cggtctttag       960
     cactttggtg cgtattagta tataagtatt tgtgagtctg tacataatac tatatctata      1020
     gtgtcctgtg tgagttgata cagtagacat ctgtgacgcg atgccgtgtt gagaagggaa      1080
     cacatctggt tttagtaagc ctacatcaca gttttgaggt tcaattcctc ttactccctg      1140
     ttgagcccct tactttctca tggatgcttc tccgcgagat tgcgttattg tctactgact      1200
     atatagagag tgtgtgtgtt gtgttttctc ttttgtgtcg tagaattgag tcgagtcatg      1260
     gacaaatctg aatcaaccag tgctggtcgt aaccgtcgac gtcgtccgcg tcgtggttcc      1320
     cgctccgccc cctcctccgc ggatgccaac tttagagtct tgtcgcagca actttcgcga      1380
     ctcaataaga cgttgtcagc tggtcgtcca actattaacc acccaacctt tgtagggagt      1440
     gaacgctgta aacctggata cacgttcaca tctattaccc taaagccacc aaaaatagac      1500
     cgcgggtctt attatggtaa aaggttgtta ttacctgatt cagtcacaga atatgataag      1560
     aaacttgttt cgcgcattca aattcgagtt aatcctttgc cgaaatttga ttctaccgtg      1620
     tgggtgacag tccgtaaagt tcctgcctcc tcggacttat ccgttgccgc catctctgct      1680
     atgtttgcgg acggagcctc accggtactg gtttatcagt atgctgcatc tggagtccaa      1740
     gctaacaaca aattgttgta tgatctttcg gcgatgcgcg ctgatatagg cgacatgaga      1800
     aagtacgccg tcctcgtgta ttcaaaagac gatgcgctcg agacggacga gctggtactt      1860
     catgttgacg tcgagcacca acgcattccc acgtctgggg tgctcccagt ctgattctgt      1920
     gttttccaga accctccctc cgatttctgt ggcgggagct gagttggcag ttctgctata      1980
     aactgtctga agtcactaaa cgttttacgg tgaacgggtt gtccatccag cttacggcta      2040
     aaatggtcag tcgtggagaa atccacgcca gcagacttac aagtctctga ggcgcctttg      2100
     aaaccatctc ctaggtttct tcggaaggac ttcggtccgt gtacttctag cacaatgtgc      2160
     tagtttcagg gtacaggtgc ccccccactt tcgtgggggc cttcaaaagg agacca          2216
//