ID AF098523; SV 1; linear; genomic RNA; STD; VRL; 6035 BP. XX AC AF098523; XX DT 19-NOV-1998 (Rel. 57, Created) DT 14-MAR-2000 (Rel. 63, Last updated, Version 3) XX DE Erysimum latent virus, complete genome. XX KW . XX OS Erysimum latent virus OC Viruses; Riboviria; Tymovirales; Tymoviridae; Tymovirus. XX RN [1] RP 1-6035 RX PUBMED; 1607861. RA Srifah P., Keese P., Weiller G., Gibbs A.J.; RT "Comparisons of the genomic sequences of erysimum latent virus and other RT tymoviruses: a search for the molecular basis of their host specificities"; RL J. Gen. Virol. 73(Pt 6):1437-1447(1992). XX RN [2] RP 1-6035 RA Mackenzie A.M., Gibbs A.J.; RT ; RL Submitted (13-OCT-1998) to the INSDC. RL Research School of Biological Sciences, Australian National University, RL Biology Place, Acton, Canberra, ACT 2601, Australia XX DR MD5; 7701c90b3cd4bede718be875bea74f2f. DR EuropePMC; PMC112128; 10864632. XX FH Key Location/Qualifiers FH FT source 1..6035 FT /organism="Erysimum latent virus" FT /mol_type="genomic RNA" FT /db_xref="taxon:12152" FT modified_base 1 FT /mod_base=m7g FT /note="putative part of a cap structure that probably FT occurs in all tymoviruses" FT 5'UTR 1..96 FT CDS 97..1419 FT /codon_start=1 FT /gene="OP" FT /product="overlapping protein" FT /db_xref="InterPro:IPR004935" FT /db_xref="UniProtKB/TrEMBL:Q549L1" FT /protein_id="AAC80554.1" FT /translation="MANGFSTSPRRPILHHSPRFNLGSSSRLFCESTPIFIGTIPLHCP FT KGTCPPAQSHGHSSLRTNLNSSPPRCPQNPGTEPSLQPLGKVLQCGLSRGLHETLKVLQ FT TPREELPLQISSQLPTSPSRLQSVPTSQHKPAYREAILHPRLPDVFYAAPNLRFVRKLP FT KPSQSVRQPRRSSRKLNDRLVSKPRSVSVLNPQVDSPLHTRRALSRQLQSARQRPRLAE FT NLCDPNSIPEPVRVRPGILGPSPFPSYREELSNTKSRFSEDKGSDFLPNPPSSNSSEPG FT LPGRPSQAPSCASENLRRPLHLHSSNPNSPHFRSRWIRKNSVKQARVQLGHISSLGQSP FT NLRPLDSLLQASRVLHATSVSSYKTQGASHEECFKTRSDGITSSHSGHLHHNDRVEHQL FT QQGPLLQCSQDSLAEPTYRPGTPSLPNFCIAAKELSSTQPS" FT CDS 104..5350 FT /codon_start=1 FT /gene="RP" FT /product="replicase protein" FT /db_xref="GOA:Q549L0" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008043" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q549L0" FT /protein_id="AAC80555.1" FT /translation="MAFQLALDALSSTTHRDSISAPLLDSSVSQLQSSLELFPYTVPKE FT LVPQLNRMGIQVSGLTSTPHPHAAHKTLELNLLFNHWAKSCNVDSAVVFMKPSKFFKLQ FT EKNSHFKSLHNYRLHPHDSNRYPHPSTSLPTEKRFYIHDSLMYFTPHQISGLFESCPNL FT LSLYASLVVPPESSMTDLSLNPDLYRYSIHKSTLHYTPEGHSAGSYNQPVNALDWLKIS FT AIQTPSLSLSVSVLESWGPLHSLLIERSSQTQNPDSQKIKDLISFQTPQALILPNPDSL FT AVPLRHRLVPQKTYDALFTYTRATRTLRTSDPAGFVRTQSNKPEFNWVTSQAWDNLQTY FT ALLTASYRPPVSYTLHRSPLTKLKELLTRNALKLAAMASPALTLAIFTTMTALNTNSSK FT ALSFSALKIHLLNPLTGPELLHFQTSVLQQKNSAPLSQAEAKQELDKSAVPAPSEHDSS FT ASQSTSLSLSASSQLLSTEKHPGSELSSKAIPVSTSCPSASKQLAPPLTAESHSSVNAL FT LRKFLGPNSPQSNLDNYNLHLHPESFTLGWKRRPLLLDSHSSFLPSSCLQPPASPSIAA FT APHPLPPAQKPPRPPTTVPTPKPLASPSQTQAAQPATQSPPSIPQTAPVTSLLPAPLET FT DDSCAGPISTFQDLFPASYYPHTANFPCRSKIPGYLEAPYPPLDCMLVALSAQMPQSPQ FT ELWSALNTLMPLSALTSPSLRVLGLGTEELTALSYYYHFQAEIHSDNEIYRFGIQTAST FT KLCLIRDSGPPAHFTAPDPLRAGSPPSRSQTNENSLRRSLLGFRLNGNLLPIDQVHSFT FT SEPSRAKNLASNMKNGFDGILTTLAALSSLSSGPSPRDRIFTLDGICDFALPKTVDLIH FT LSGFAGCGKTHPIQQLLKTPHFHNFRVVTPTTNLRSEWKSDMALPAHHNWRFSTWESAL FT LKHAEILVIDEIYKLPRGYLDLSLIADPTVKLVILLGDPLQGEYHSTSAHSSNLRLSSE FT IPRLLPFIDYYCYWSYRVPKCVAKLFSLPCFNPSEGFIKTTLDFFPSANNLVNSHSVVH FT ISEACGWNAVTISSSQGCTFSDPAFIHLDRNTALLSPSNCLVALTRSRSGVYFKGDFTF FT LSSLSGSSRMFSLAYSGQPIHLPDFFPEIVFQLNMITAPLTKRSSSFRSGFQPNISSAP FT KIPAPPNLPCPPHIPTNYSKDVIVNNQALYGESLERRLSVLHLPPTRMTLHSDINITAP FT SSSSFQPSDEPVPSDHTAVYPGFDFFTLAAHFLPAHDPEVKEIELKDQTSQQFPWLNLD FT FHISCQTSSLISARHQPGSDSTLLPASLHKRLRFRPTAAPYQITPSDSFLGNCLYRSWC FT QVYRRDPNVRLPFNEALFLECIAVNDYAQLSSKTQATIVANASRSDPDWRHTFVKIFAK FT SQHKVNDGSIFGPWKACQTLALMHDYVILTLGPVKKYQRLFDQLERPSHIYYHAGNTPH FT DLRRWCSKHLETSHCTTNDYTAFDQSQHGEAVVFEVLKMRRLSIPENLISLHVHLKTNV FT ETQFGPLTCMRLTGEPGTYDDNTDYNLAVLNLQYDLRKTPTLVSGDDSYLSGTLSPRSN FT WPFVKELLHLRLKPSSLIDGLFCGYYLGPQGCIRNPLALFAKLMIAEDDGSAFDKLPSY FT LTEFSIGHGLGDSLWQLLPSDLVLYQSACFDYFCRKATRSQKILLQPGLVDQETLDKIA FT LSAKFISRPFYSMLSSHARSLISTKFKLDSSLTTLQDPMVEFELLPFSNVQ" FT misc_feature 5315..5330 FT /gene="RP" FT /note="tymobox" FT CDS 5347..5955 FT /codon_start=1 FT /gene="VP" FT /product="virion protein" FT /db_xref="GOA:Q549K9" FT /db_xref="InterPro:IPR000574" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q549K9" FT /protein_id="AAC80556.1" FT /translation="MTSSRSTELIETQEDVVRKLSQKTPVSNFSALPLPNGPQAPTQLQ FT PFQFEFPLPAGQEGSVTLPLATFPKMATFLSRHRRAQLTQLHAVVSPSAVSIGHPLTVQ FT LIWVPASSTTTSSQILGTYGGQQISVGGQVTNSSPAKVSANLLMMNPHIKDSTSYTDTP FT KLLVYSTPAVPDDKLTTSSASIIVFGEVLLSSPQLNPSA" FT 3'UTR 5956..6035 XX SQ Sequence 6035 BP; 1432 A; 2087 C; 980 G; 1536 T; 0 other; ggaaaattat ttcaatcaga aaactctctt catagacttg ttttcttcct tcccaccccc 60 tctaaacctc tcttatccaa gatctcgttt agatttatgg ccaatggctt ttcaactagc 120 cctagacgcc ctatcctcca ccactcaccg agattcaatc tcggctcctc ttctcgactc 180 ttctgtgagt caactccaat cttcattgga actattcccc tacactgtcc caaaggaact 240 tgtcccccag ctcaatcgca tgggcattca agtctccgga ctaacctcaa ctcctcaccc 300 ccacgctgcc cacaaaaccc tggaactgaa ccttctcttc aaccattggg caaagtcctg 360 caatgtggac tcagccgtgg tcttcatgaa accctcaaag ttcttcaaac tccaagagaa 420 gaactcccac ttcaaatctc ttcacaatta ccgacttcac cctcacgact ccaatcggta 480 cccacatccc agcacaagcc tgcctacaga gaagcgattt tacatccacg actccctgat 540 gtattttacg ccgcaccaaa tctcaggttt gttcgaaagt tgcccaaacc ttctcagtct 600 gtacgccagc ctcgtcgttc ctccagaaag ctcaatgacc gacttgtctc taaaccccga 660 tctgtatcgg tactcaatcc acaagtcgac tctccattac acaccagaag ggcactcagc 720 cggcagttac aatcagcccg tcaacgccct cgattggctg aaaatctctg cgatccaaac 780 tccatccctg agcctgtccg tgtccgtcct ggaatcttgg ggccctctcc attcccttct 840 tatcgagagg agctctcaaa cacaaaatcc agattctcag aagataaagg atctgatttc 900 cttccaaacc ccccaagctc taattcttcc gaacccggac tccctggccg tccctctcag 960 gcaccgtctt gtgcctcaga aaacttacga cgccctcttc acttacactc gagcaacccg 1020 aactctccgc acttcagatc ccgctggatt cgtaagaact cagtcaaaca agcccgagtt 1080 caactgggtc acatctcaag cttgggacaa tctccaaacc tacgccctct tgacagcctc 1140 ttacaggcct cccgtgtcct acacgctaca tcggtctcct cttacaaaac tcaaggagct 1200 tctcacgagg aatgctttaa aactcgcagc gatggcatca ccagctctca ctctggccat 1260 cttcaccaca atgaccgcgt tgaacaccaa ctccagcaag gccctctcct tcagtgctct 1320 caagattcac ttgctgaacc cacttacagg cccggaactc cttcacttcc aaacttctgt 1380 attgcagcaa aagaactcag ctccactcag ccaagctgag gcgaaacaag aattggacaa 1440 gtcagctgtg ccagcacctt ctgaacatga ctctagcgcc tctcaatcaa ctagcctctc 1500 tctcagcgct tcttcccaac ttcttagcac cgaaaagcat cccggctccg agctttcttc 1560 caaagctatc ccggtctcta catcctgccc ctctgcttcc aaacagcttg ctcctccgct 1620 cactgctgag tctcactcct cagtcaatgc gcttctgcgc aaattcctgg gtcccaactc 1680 tcctcaatcc aatctggaca attacaattt gcatctacat cccgagtcgt tcactctggg 1740 ctggaaacga cgacccctac ttttggactc tcattcaagt ttcctaccct cttcttgcct 1800 tcaacctcca gcatctccca gcatagcagc agctcctcac cctcttcctc ctgctcagaa 1860 gcctccccgg ccacctacca ctgtgcccac tcccaaacct ctagcttctc cttcccaaac 1920 tcaagctgct cagccggcca cacaatctcc tccttcgatt ccccaaacag ccccagttac 1980 ttcactcctc ccggctcccc tagaaactga tgactcatgc gctggcccaa tctccacctt 2040 ccaggatctc tttccagcca gttactaccc tcacacagcc aacttcccct gccgatcaaa 2100 aataccgggc tatcttgaag ctccctaccc ccctctggat tgcatgctgg tcgctctctc 2160 tgcccaaatg cctcaatccc ctcaagagct gtggtcagcg ctcaacactc taatgcctct 2220 aagcgctctc acctcaccca gcctccgagt cttaggtctc ggcaccgagg agctcactgc 2280 tctcagttac tattatcact ttcaggccga gattcattcc gacaatgaaa tatatagatt 2340 cggcatacaa actgcttcaa ccaagctctg cctcattcgg gattcaggac ccccagctca 2400 cttcactgct cctgatcctc taagagccgg ctcccctccc agcagatccc agaccaatga 2460 gaattctcta cgccgctcac ttctaggctt ccgcttgaat gggaatctct tgccgatcga 2520 tcaagtccac agcttcactt ctgagccctc tcgcgcaaag aaccttgctt ccaacatgaa 2580 aaatggtttt gatggcattc ttacaaccct cgctgcgctc tcctccctct cctctggacc 2640 ctcaccccgc gatcgcatct tcactcttga tggcatctgc gattttgctc tacccaaaac 2700 tgttgacctt attcacctgt ccgggtttgc cggttgtggc aaaactcatc caattcaaca 2760 gcttctcaaa acccctcact tccacaactt cagggtggtc actcccacca ccaaccttcg 2820 atcagagtgg aaatcagaca tggctctccc agcacaccac aactggagat tttcaacttg 2880 ggaatcagcc ctcttaaaac atgccgaaat actcgtcatt gacgaaattt acaaacttcc 2940 tcgaggatac ctagaccttt ctctcatagc tgatcccact gtcaagctcg tcatcctcct 3000 cggagacccc cttcaaggcg agtatcactc aacttctgct cactcctcca acttgcggct 3060 cagctcagaa atcccaaggt tgctcccttt catcgactac tactgttact ggagctaccg 3120 cgttccaaaa tgtgtcgcaa agcttttctc cctgccatgt ttcaacccct ctgaaggctt 3180 cataaagact actctggact ttttccccag cgctaacaat ttggttaaca gccactcagt 3240 agtccacatc tctgaagctt gcggctggaa tgctgtcaca atatcttcga gtcaaggatg 3300 caccttctcc gaccctgctt tcatccacct tgatcgtaac acagctcttc tgtctccctc 3360 aaactgcctc gtagctctca ccagatcccg ctctggagtt tacttcaaag gcgatttcac 3420 atttctgagc tctctctccg gttcctctcg aatgttctcg ttagcttact ctggccagcc 3480 gattcacctt ccagacttct ttccagagat tgtcttccaa ctcaacatga taactgcccc 3540 tctgacaaaa agaagttcca gctttcgatc cgggttccaa cccaacatct cttctgcccc 3600 aaaaatcccg gcccctccaa atcttccctg cccccctcat atcccaacca attactcgaa 3660 agacgtcatt gtgaacaatc aagctctcta tggtgagtcc ctcgaaagac gtttgtctgt 3720 tctgcatctg ccccccactc gcatgactct tcattctgac atcaatatca ccgcaccttc 3780 aagcagcagt ttccagccct cagacgagcc agttccttct gaccacactg ctgtctaccc 3840 tggctttgac ttcttcactc tcgccgctca ctttcttcca gctcacgacc cagaagtcaa 3900 agaaattgaa ctcaaagacc aaaccagcca acaatttccc tggctgaatc tagacttcca 3960 catatcatgc cagacttctt ctttgatctc tgcaaggcac caacccgggt cagactccac 4020 tctccttcca gcttcactcc acaaaagact ccgatttcgc cccacagcag ctccatacca 4080 aatcactcct tctgactctt tcctaggcaa ttgtctctac cgctcctggt gtcaagttta 4140 ccgtcgcgac ccaaatgtgc gattgccctt caacgaagct ctttttctag aatgcattgc 4200 tgtcaacgac tacgcccagc tgagctcaaa aactcaagcc actattgtag ccaatgcatc 4260 tcgatcagac cctgactggc gacatacttt tgtaaaaatc ttcgctaagt cacaacacaa 4320 agtcaatgat ggctccattt ttggcccatg gaaagcttgc caaactcttg ctctcatgca 4380 tgattatgtc attctcaccc tgggtccggt taagaaatat caacgactgt tcgaccagct 4440 ggagcgacct tctcacatct actaccatgc agggaacact cctcatgacc ttaggcgctg 4500 gtgctccaaa cacttagaaa cctctcactg caccaccaat gattatacag ccttcgacca 4560 gagccagcac ggtgaagccg tcgtgtttga agtcctgaag atgagacgac tttccattcc 4620 ggaaaatctg atatctctgc acgtccatct caaaaccaac gtggaaaccc agttcggacc 4680 tctcacttgc atgcgactca ctggcgagcc cggcacctat gacgacaaca ctgactacaa 4740 cttggctgtt ctcaatctcc agtacgacct tcgcaaaaca ccgacccttg tctcaggcga 4800 tgactcctac ttatccggaa ccctttcccc aagatccaac tggcctttcg tcaaagagct 4860 cctccacctc cgcttaaaac cgagcagtct gatcgacggc ctcttctgcg gttactactt 4920 aggaccccaa ggctgcatcc gcaatccact tgcccttttc gctaaactca tgatagccga 4980 agacgatggc tccgcctttg acaaacttcc ttcctacctc accgagttct cgattggaca 5040 tggtcttgga gattctctct ggcagcttct cccttctgat cttgtgctct atcagagtgc 5100 gtgtttcgat tacttctgcc gcaaagccac acgctctcag aaaatcctac tgcaaccagg 5160 ccttgtagat caggaaactt tagacaagat tgctttatcg gccaagttca tatctcgtcc 5220 tttctactca atgctttcaa gccatgctcg cagcctgatt agtactaaat tcaaactcga 5280 ctcttccctc accactctcc aagatcccat ggttgagttt gaattgcttc ccttttccaa 5340 tgtacaatga cttcctctcg atccactgaa ctcatcgaga ctcaagaaga cgttgttcgt 5400 aaactctccc agaaaactcc agtttccaac ttctcagctc ttccacttcc aaatggacct 5460 caagccccaa ctcagctcca gccgttccag ttcgaattcc ctctcccggc tggccaagaa 5520 ggttctgtca ccctgcctct cgccaccttc cccaaaatgg caaccttcct ttcccgacac 5580 cgtcgagccc aactcactca acttcacgct gtcgtctctc ccagtgctgt atccattggg 5640 caccccctca ccgtccaact catctgggtc cccgccagct caacaaccac ttcctcccaa 5700 atactgggca cttacggcgg tcaacaaatc tcggtcggtg gtcaggtaac caactcctct 5760 ccagctaaag tctctgctaa cctcctcatg atgaacccac acatcaaaga ctctacaagc 5820 tacaccgaca cccccaaact cctcgtctac agcacccccg ctgtgccaga cgacaaactc 5880 acaaccagct cagcctccat cattgtcttt ggtgaagttc tgctcagctc ccctcaactc 5940 aatccttcag cttaagcaat agcgacctta agcttctttc tccagcgtgt caccacgttt 6000 cgctcctgaa tgtccccagg taaagggaca cccca 6035 //