Dbfetch
ID AF093797; SV 1; linear; genomic RNA; STD; VRL; 7598 BP. XX AC AF093797; XX DT 20-OCT-1998 (Rel. 57, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 5) XX DE Norwalk virus, complete genome. XX KW . XX OS Norwalk virus OC Viruses; Riboviria; Caliciviridae; Norovirus. XX RN [1] RP 1-7598 RX DOI; 10.1007/s007050050038. RX PUBMED; 10795514. RA Schreier E., Doering F., Kuenkel U.; RT "Molecular epidemiology of outbreaks of gastroenteritis associated with RT small round structured viruses in Germany in 1997/98"; RL Arch. Virol. 145(3):443-453(2000). XX RN [2] RP 1-7598 RA Schreier E., Doering F., Kuenkel U.; RT ; RL Submitted (24-SEP-1998) to the INSDC. RL Molecular Virology, Robert Koch Institute, Nordufer 20, Berlin 13353, RL Germany XX DR MD5; 1ebb6e98c95cf9bb230208ec4bd75e1c. DR COMPARE-RefGenome; BS5/1997/DE. DR EuropePMC; PMC1069520; 15795283. DR EuropePMC; PMC1112114; 15890909. DR EuropePMC; PMC112117; 10846102. DR EuropePMC; PMC1234054; 16145082. DR EuropePMC; PMC1248523; 16207981. DR EuropePMC; PMC136217; 12021327. DR EuropePMC; PMC141104; 12552024. DR EuropePMC; PMC1448665; 16597849. DR EuropePMC; PMC1489406; 16757638. DR EuropePMC; PMC153860; 12682144. DR EuropePMC; PMC156193; 12768037. DR EuropePMC; PMC156499; 12791850. DR EuropePMC; PMC1594604; 16891526. DR EuropePMC; PMC1698321; 16943348. DR EuropePMC; PMC201174; 14532025. DR EuropePMC; PMC2042093; 17616614. DR EuropePMC; PMC2795755; 19961620. DR EuropePMC; PMC2828081; 17953089. DR EuropePMC; PMC2919043; 20554772. DR EuropePMC; PMC3080904; 21415019. DR EuropePMC; PMC3187498; 21849454. DR EuropePMC; PMC3291221; 16965715. DR EuropePMC; PMC3695492; 23630317. DR EuropePMC; PMC4298492; 24989606. DR EuropePMC; PMC446284; 15243049. DR EuropePMC; PMC4642597; 26100718. DR EuropePMC; PMC4793396; 11807686. DR EuropePMC; PMC4928471; 27375966. DR EuropePMC; PMC525163; 15528717. DR EuropePMC; PMC5531542; 28750021. DR EuropePMC; PMC5914202; 29097140. DR EuropePMC; PMC6028094; 29965979. DR EuropePMC; PMC88214; 11427598. XX FH Key Location/Qualifiers FH FT source 1..7598 FT /organism="Norwalk virus" FT /strain="Norwalk-like" FT /isolate="BS5" FT /mol_type="genomic RNA" FT /country="Germany" FT /db_xref="taxon:11983" FT CDS 5..5359 FT /codon_start=1 FT /product="polyprotein" FT /note="ORF1" FT /db_xref="GOA:Q9YS15" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001665" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR013614" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q9YS15" FT /protein_id="AAC64602.1" FT /translation="MMMASKDVVATNASSTGDNSNTMKDRFLARLKSLGNTKPIKIENT FT QMALGLLSREPSPSPNRDPPKQQRDRAPRSVAETQQAMGWTDPPVDQNLPTWEELSQSE FT KQKIMAENSKWFDAGGLGPATLPSNYCRVQDNGDGDQQVKWSAKDGVNLGVDALTTVQG FT PPWNLCPLPPVDQRNSGAAKEPLIGDMIEFYEGHIYHYAMYIGQGKTIGVHSPRAAFSI FT PRITIHPIAAWWRVCYVPTQEQRLSYDQLKELENEPWPYAAVTNNCYEFCCRIMDLQDT FT WLERRLVTSGRFNHPTQDWSKDTPDFQQDSKLEVVRDAVLAAINGLVSRPFKNLLNKLK FT PLNILNLLSNCDWTFMGIVETIILLMELFGVFWDPPDVSNFIASLLPDMHLQGPEDLAK FT DLIPLILGGIGLAIGFTKDKVTKVMKSAVDGLRAATQLGQYGLEVFAVIKKYFFGGDQT FT EKTLKDIEAAVIDMEVISTTAITQLVRDKQSARTYMAILDAEEEKARKLSVKHADPHVV FT STTNALISRISMARSALAKAQAELTNRVKPVVIMMCGPPGIGKTKAAEYLAKRLANEIR FT PGGKVGLVPREAVDHWDGYHGEEVMLWDDYGMSKIADDCNKLQAIADTAPLTLNCDRIE FT KKGMQFVSDAIVITTNAPGPAPVDFVNLGPVCRRVDFLVYCSAPEVEQVRRVSPGDTGA FT LKDCFKDDFSHLKMEIAPQGGFDNQGNTPFGKGTMRPTTINRLLIQAVALTMERQDEFQ FT MQGPTYDFDSDRISAFTSLAKANGLSLIGMASLGKRLRSVNSIHGLKNALTGYTITPCT FT IKWQARFYDIESDGNVVKICENTSAQTQRQQSIDTAVLALTRLRAARAAAYASCLQCAI FT TTVLQMAGSALVIHRAVKRMFGTHTNAVSLEGPDREHRCRVHQAKANGRGPIGHDDVIE FT KYGLCETEDEGTQEQEATIELPTASHEGKNKGKTKKGRGRKANYNAFSRRGLNDEEYEE FT SRRLEKEKGGNYSIQEYLEDRQRYEEEMAEVQAGGDGGIGETEMEIRHRVFFKSKTKRN FT RQEERRQLGLVTGSEIRKRKPIDWTPPKNEWADDDREVDYTEKINFEAPPTMWSRVTRF FT GSGWGFWVSPTVFITTTHVIPIGAKEFFGEPLDSIAIHRAGEFTQFRFSRKIRPDLTGM FT VLEEGCPEGVVCSILIKRDSGELLPLAVRMGAVASMKIQGRLVHGQSGMLLTGANAKGM FT DLGTLPGDCGAPYVYKRNNDWVVCGVHAAATKSGNTVVCAVQAGEGETTLEGGDKGHYA FT GHEIVRNSKGPALSSKTKFWRSTPEPLPPGVYEPAYLGGKDPRVKGGPSLYQVLRDQLK FT PFAEPRGRMPEPGLLEAAVETVTSMLEQVMDTPTPWSYADACQSLDKTTSSGYPYHKRK FT NDDWNGTTFVGELGEQAAHANNMYELGKSMKPLYTAALKDELVKPEKIYQKIKKRLLWG FT ADLSTVIRSARAFGPFCDAIKSHVIKLPIKVGMNSIEDGPLIYAEHAKYKNHFDADYSA FT WDSTQNRQIMMESFSIMCRLTASPDLAAVVARDLLAPSEMDVGDFVIRVKEGLPSGFPC FT TSQVNSINHWLITLCALSEVTGLAPDVIQSQSYFSFYGDDEIVSTDIDFDPARLTQVLR FT EYGLRPTRPDKSEGPIILRKNVDGLVFLRRTISKDAAGYQGRLDRNSIERQLWWTRGPN FT HDDPNETLIPHPQRKIQLISLLGEASLHGEKFYRKISGRVIQEIKTGGLEMYVPGWQAM FT FRWMRFHDLGLWTGDRDLLPEFVNDDGV" FT CDS 5343..6965 FT /codon_start=1 FT /product="capsid protein" FT /note="ORF2" FT /db_xref="InterPro:IPR004005" FT /db_xref="InterPro:IPR013643" FT /db_xref="InterPro:IPR029053" FT /db_xref="InterPro:IPR033703" FT /db_xref="UniProtKB/TrEMBL:Q9YS14" FT /protein_id="AAC64603.1" FT /translation="MMMASKDAPPSPDGASGAGQLVPEVNTADQISMDPVAGASTAVAT FT AGQVNMIDPWIFNNFVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLAHLSQMYNGWV FT GNMRVRILLAGNAFTAGKVIICCVPPGFDARILTIAQATLFPHLIADVRTLEPVELPLE FT DVRNVLYHNSSQPQPTMRLVAMLYTPLRTGGGSGGTDAFVVAGRVLTCPAPDFSFLFLV FT PPSVEQKTRVFSVPNIPLKDLSNSRVPTLIQGMFVSPDVNQSVQFQNGRCQIDGQLQGT FT TPVSLSQLCKIRGRTSSNTRVLNLSEVDGTPFVPLESPAPVGFPDIGGCDWHVGFTFEA FT RDQDPSQNVTFATNDSSFVPYLGSISPHNGDGFHSGDIIGSLDWISAPSDGSALDVWSI FT PKYGSSLPDVTHLAPAVFPPGFGEVILYFHSKFPGSGPTDKLRVPCLIPQEFITHFCNE FT QAPIAGEAALLHYVDPDTGRNLGEFKLYPDGFMTCVPNSISSGPQTLPINGVFVFVSWV FT SRFYQLKPVGTASAARRLGLRRI" FT CDS 6965..7594 FT /codon_start=1 FT /product="unknown" FT /note="ORF3" FT /db_xref="InterPro:IPR004278" FT /db_xref="UniProtKB/TrEMBL:Q9YS13" FT /protein_id="AAC64604.1" FT /translation="MAQAIIGAIAASAAGSILGAGIQAGAEAGLQAQRYQQDLQLQQNT FT FQHDREMIGYQVQASNALLAKNLNTRYTLLQAGGLSSADAARAVAGAPVTRIVDWNGTR FT VAAPTSSATTLKSGGFMPVPIPLTQKSKQPLMTGQDNPNYAASSISRTASWVQSQNSLR FT SMPPFHNDALRTVWVTPPGSSSTSSMQSSFYGVFNTDRLPLFANRR" XX SQ Sequence 7598 BP; 2025 A; 1822 C; 1888 G; 1863 T; 0 other; gtgaatgatg atggcgtcga aagacgtcgt tgcaactaac gcttcaagca ctggtgacaa 60 tagtaacaca atgaaggatc gctttttagc gagactcaaa agtttgggta acaccaagcc 120 cataaaaatt gaaaacacac aaatggctct cgggcttcta agccgggagc catcaccatc 180 gcccaaccgt gaccctccta aacaacaacg ggacagggca ccacggagtg tggctgaaac 240 ccaacaggca atgggatgga cagacccacc cgttgatcaa aacctgccaa catgggagga 300 gttgagccag tctgagaagc agaaaatcat ggctgagaat tcaaagtggt ttgatgctgg 360 tggtctaggt cctgccacct tgccatcgaa ttattgtcgt gttcaagaca acggtgatgg 420 tgaccagcag gttaaatgga gtgctaaaga tggtgtcaat ctgggggttg atgccctaac 480 aactgtccaa ggccccccat ggaatttatg cccacttccc ccagtcgatc aacgcaatag 540 tggggcagcc aaggaacccc tgattggaga tatgattgag ttctatgaag ggcacatata 600 ccattatgcc atgtacatag gtcaggggaa aacaattggt gtgcattccc ctagggccgc 660 tttctccata cctaggatta ccatacaccc aatcgctgcc tggtggaggg tatgctatgt 720 ccccacccag gaacaaaggc tgagttatga ccaacttaaa gagcttgaaa atgaaccttg 780 gccatatgca gctgttacta acaactgcta tgagttttgc tgcaggataa tggatctaca 840 ggatacgtgg ttggagagga gattggtaac atcaggtcgc ttcaaccacc caactcagga 900 ctggtccaag gacactccag acttccagca agatagtaag ttggaggttg tccgtgatgc 960 cgtcttagca gcaattaatg gcctggtctc acgcccgttc aagaacttgc taaataagct 1020 taaaccacta aatatcctca acctactgtc caactgtgac tggaccttta tgggcatagt 1080 tgaaaccata atactgttga tggaactctt tggggtcttt tgggaccccc ctgacgtgtc 1140 caacttcata gcttctctcc tccctgacat gcaccttcaa ggcccggaag acttggccaa 1200 agatctgata ccactcatac tgggtgggat tgggttggcc ataggtttca ctaaggataa 1260 agtgacaaag gtgatgaaaa gtgcagttga tggtttgcgt gcagctaccc aactggggca 1320 atatggcctg gaagtcttcg cagtcatcaa gaagtatttc tttggaggtg atcagactga 1380 gaagacactt aaagacattg aggcagcagt cattgatatg gaggttatct ccacgacagc 1440 cataacgcaa ctagttagag acaagcaatc tgccaggact tatatggcca tactagatgc 1500 tgaagaggaa aaggctagaa aactatctgt gaaacacgct gacccccacg tggtgtcaac 1560 caccaacgca ttgatttcac gcatttcaat ggcacggtct gccctggcta aggcacaagc 1620 tgagttgaca aacagggtta agccagtggt gataatgatg tgtggccctc ctggtatagg 1680 caagacgaag gctgccgagt acctagccaa acggcttgcc aatgaaatac gcccaggtgg 1740 gaaagttggt ctagttccac gtgaagctgt cgaccactgg gacggttatc atggtgagga 1800 ggttatgttg tgggatgact atggaatgtc aaagatagca gatgactgta acaaactgca 1860 agcaatcgct gatacagccc ctttaacact caactgtgac cgaatagaga agaaaggtat 1920 gcagttcgtg tcagatgcta ttgttataac caccaacgcc cccgggccag cccctgttga 1980 ctttgtcaac ttaggacctg tctgtcggcg tgttgacttc ctagtctatt gctccgcccc 2040 agaagtcgaa caggtacggc gtgtcagccc tggagatact ggcgcgctca aagattgctt 2100 caaagatgat ttctctcacc ttaagatgga aattgcacca cagggtggat ttgacaacca 2160 agggaacaca ccatttggca agggcaccat gcgtcccacc accataaaca ggcttttaat 2220 ccaggcagtc gccctcacca tggaacgcca ggatgaattt caaatgcaag gaccaaccta 2280 tgattttgac tcagacagga tttcagcttt cactagccta gccaaagcta atggcttaag 2340 cttgattggt atggcaagcc tcggaaagag gctacgtagt gtcaactcaa tccatggcct 2400 caaaaatgcc ctgactggtt acaccatcac accctgcacc ataaaatggc aagctaggtt 2460 ttatgacata gagtctgatg gcaatgtggt caagatatgt gagaacacaa gtgcacaaac 2520 ccaacgccaa cagtccattg acaccgctgt cctcgcgctc acccggctca gggctgccag 2580 ggctgccgca tatgcatctt gtctgcaatg tgccatcacg actgtgttgc agatggcggg 2640 ttcagctctt gtcatacacc gagccgtcaa gcgtatgttc ggcacccaca ctaatgccgt 2700 ctccttagag ggtcctgaca gggaacaccg ctgtcgagtg catcaggcta aggctaatgg 2760 tcgtggcccc attggacatg atgatgttat agaaaagtat gggctgtgtg aaacagaaga 2820 tgagggcacc caagagcaag aagccaccat tgaattgccc actgcaagcc atgaaggcaa 2880 gaacaaaggg aaaaccaaaa agggccgagg ccgaaaagcc aattacaatg ccttctctag 2940 acgtggtctc aatgatgagg agtacgagga gtccagaaga ttagagaagg aaaaaggtgg 3000 aaattacagc atccaagaat accttgaaga caggcagcgc tatgaggagg agatggctga 3060 agtgcaggcc ggcggcgatg gtggaatagg tgagacagag atggagatac gccatcgagt 3120 cttctttaag tccaagacaa agagaaaccg tcaggaagaa cgtcggcagc ttggcttggt 3180 tacaggcagt gagataagga agagaaaacc tatagattgg acccccccca aaaatgaatg 3240 ggcagatgac gacagagagg tggactacac tgaaaaaata aactttgaag cccctcccac 3300 catgtggagc cgagtcaccc gattcggctc cggatggggg ttctgggtca gccctacagt 3360 gttcattact actacccatg ttataccaat tggggccaaa gaattctttg gggaaccatt 3420 ggattccatt gccatacacc gtgcaggaga gttcacacag ttccgtttct caaggaagat 3480 acggccagat ctaacaggga tggttcttga ggaagggtgt cctgaagggg tggtttgctc 3540 gatcttgatc aagcgtgatt caggtgagct gctaccattg gctgtgcgta tgggggctgt 3600 ggcttcaatg aagatacagg gtcggttggt ccatggtcag tcgggtatgc tcctgactgg 3660 tgccaatgca aaaggaatgg atctcggcac tctcccaggt gattgtggtg caccctatgt 3720 ctacaagaga aacaatgatt gggttgtttg cggtgtccac gcagcagcca ccaagtcagg 3780 caacactgtg gtctgtgcag tgcaggcagg tgagggggag accactctag aaggaggtga 3840 caagggtcat tatgctgggc acgaaatagt caggaacagt aagggccctg cactctcatc 3900 taaaactaaa ttctggagat caacaccaga acccctaccc ccaggtgtct atgaaccagc 3960 ttacctagga ggaaaagacc ctagagtcaa gggtggccct tctttatatc aagtccttcg 4020 ggaccaactg aaaccttttg ctgagccacg tgggcgcatg ccagagccag gtttactgga 4080 ggctgctgtt gagacagtga cttctatgct ggaacaggtt atggacacgc ccacgccctg 4140 gtcatatgct gatgcttgcc agtcattaga caagaccact agttctggat acccctacca 4200 taagagaaag aatgatgatt ggaatggcac cacctttgtg ggagaacttg gtgagcaagc 4260 agcccacgca aacaacatgt atgagctagg taagtccatg aagcccctat atacagcagc 4320 cctcaaagat gaacttgtca aaccagagaa gatctatcaa aaaattaaga aaaggttact 4380 ctggggggct gacctgtcaa ccgtcatacg atctgcacgg gcttttggcc ccttctgtga 4440 cgccataaag tcccatgtaa tcaagttgcc tattaaagtt ggtatgaatt caattgagga 4500 tggcccccta atctatgctg aacatgcaaa atataagaat cactttgatg cggattactc 4560 agcttgggac tcaacacaaa ataggcaaat tatgatggag tctttctcaa tcatgtgccg 4620 cctcaccgcc tcaccagatt tggcggctgt tgtggctaga gacctactag ccccttccga 4680 aatggatgtg ggagattttg taataagggt taaggagggt ctcccatcag gcttcccctg 4740 tacttcacaa gtcaatagca taaatcattg gctcattaca ttgtgtgcct tgtctgaggt 4800 cacgggcttg gcacccgatg ttatacaatc acagtcatat ttctccttct atggggacga 4860 tgagatcgtg tccacagaca ttgattttga cccggctcga ctcacccagg tccttaggga 4920 gtatggactg cgtccaactc gcccagataa aagtgagggc cccataatct tgaggaaaaa 4980 tgttgatggc ttggtattcc ttaggcgcac tatctccaag gatgcagctg gttaccaggg 5040 ccgattggat agaaactcca tagaaagaca gctatggtgg actcgtggcc ccaatcatga 5100 tgacccaaat gagacgctca ttccccaccc ccaaagaaag atccaactta tatcactgct 5160 gggagaggca tcacttcatg gggaaaagtt ttacaggaaa atttcaggta gagtcatcca 5220 agagatcaag acaggtggac tggaaatgta tgtgccaggc tggcaggcca tgttccgctg 5280 gatgcgtttt catgaccttg gactttggac aggagatcgc gatctcctgc ccgaattcgt 5340 aaatgatgat ggcgtctaag gacgccccac catcgcctga tggcgccagt ggcgctggcc 5400 agctagtgcc ggaggttaat acagctgacc aaatttcaat ggatcctgtt gcgggtgctt 5460 ctaccgcagt tgcaacagct gggcaagtta atatgattga tccatggata ttcaacaatt 5520 ttgtccaggc cccccagggt gaatttacca tttctccaaa taataccccc ggtgatattt 5580 tatttgattt acaattgggc ccccacttga atcctttctt agctcattta tcacagatgt 5640 acaatggatg ggttggcaat atgcgggtcc gcatattgct ggcaggcaat gccttcacag 5700 ctggtaaggt aatcatatgt tgtgtccccc ctggctttga tgctagaata cttactattg 5760 ctcaagctac cctatttcct cacttgattg ctgatgttag gactcttgaa ccagtagaat 5820 tacctctcga ggatgtacgc aatgtcctct accacaatag cagccagcca cagccaacca 5880 tgcgactggt ggctatgcta tataccccat tgcgcacagg cggtgggtct ggaggcactg 5940 atgcttttgt ggttgctggg agagttctga catgccccgc accagacttt agttttctgt 6000 tccttgttcc tccctctgta gagcaaaaga ctagggtctt tagtgtcccc aatataccac 6060 tcaaagatct ctcaaattcc cgagtgccaa ccttgatcca gggcatgttt gtttctcctg 6120 atgtcaatca atcggtgcag ttccaaaatg ggcgatgtca aattgatggt cagttgcaag 6180 gtaccacccc agtatccctc agccaattat gtaagatcag aggtaggact tccagtaata 6240 ccagagtgct taaccttagt gaggttgacg ggacaccttt tgtaccactt gagtcccctg 6300 cacctgtagg ttttccagac ataggcgggt gtgattggca tgttggtttc acttttgagg 6360 cacgagacca ggacccctct cagaatgtga cctttgcaac caatgattct agctttgtac 6420 catatcttgg cagtatttca ccccacaatg gtgatgggtt ccatagtggt gacatcatag 6480 gtagtttgga ttggatctca gctccatcgg atggctccgc acttgatgta tggtctatac 6540 caaagtatgg atcatctctt ccagatgtca cccatctggc ccctgcagtt tttccccctg 6600 gctttggtga ggttatcctt tactttcact ctaaatttcc tggttctggc cccactgata 6660 aacttagggt tccatgtttg ataccacaag agtttataac acatttctgt aatgagcaag 6720 cacccatagc gggggaggct gccctccttc actatgtgga ccctgacaca ggtaggaact 6780 taggggaatt caagctttat ccagatggct ttatgacatg tgtgcctaac agcatcagca 6840 gtggtcccca gactctgcca atcaatggtg tgtttgtatt tgtgtcctgg gtatccagat 6900 tttaccaact taagcctgtg ggaacggcct cagcggccag gaggcttggt cttcggcgca 6960 tataatggct caagccatca taggtgccat agcagcttct gctgccggaa gcatactcgg 7020 tgctggcata caagctggtg ctgaggcagg actccaagcc caacggtatc aacaggatct 7080 ccaactacaa cagaatactt tccaacatga tagggaaatg atagggtacc aggtgcaggc 7140 cagtaatgcc ctattggcta agaatctcaa cactagatac actctactgc aggcaggggg 7200 tttgtctagt gcggatgcag ctagggctgt tgcaggcgct cctgttactc gcatagtgga 7260 ttggaacgga acccgtgtgg cagcccccac atcgagcgcc actactttaa aatctggtgg 7320 gttcatgcct gttcctatac ctttaaccca gaaatctaaa caacctttaa tgactgggca 7380 agataatcct aactatgctg cttcttctat ttctagaact gcttcatggg tgcaatccca 7440 aaactctttg agatctatgc ccccttttca taatgatgct ctccggactg tgtgggtcac 7500 gccacctggt tcgtcttcta catcttctat gcagtctagt ttctatggtg tctttaatac 7560 agatagatta ccccttttcg caaataggag gtagggaa 7598 //