Dbfetch
ID AF091736; SV 1; linear; genomic RNA; STD; VRL; 8304 BP. XX AC AF091736; XX DT 29-SEP-1998 (Rel. 57, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 3) XX DE VESV-like calicivirus strain Pan-1, complete genome. XX KW . XX OS VESV-like calicivirus OC Viruses; Riboviria; Caliciviridae; Vesivirus. XX RN [1] RP 1-8304 RX DOI; 10.1007/s007050050497. RX PUBMED; 10076521. RA Rinehart-Kim J.E., Zhong W.M., Jiang X., Smith A.W., Matson D.O.; RT "Complete nucleotide sequence and genomic organization of a primate RT calicivirus, Pan-1"; RL Arch. Virol. 144(1):199-208(1999). XX RN [2] RP 1-8304 RA Rinehart-Kim J.E., Zhong W.M., Jiang X., Smith A.W., Matson D.O.; RT ; RL Submitted (14-SEP-1998) to the INSDC. RL Center for Pediatric Research, Eastern Virginia Medical School, 855 W. RL Brambleton Avenue, Norfolk, VA 23510, USA XX DR MD5; 382683af5721b1d3a6625eabe821558e. DR EuropePMC; PMC112747; 10400760. DR EuropePMC; PMC1472167; 16698991. DR EuropePMC; PMC2815582; 19940055. DR EuropePMC; PMC3519611; 23190937. DR EuropePMC; PMC416503; 15163740. DR EuropePMC; PMC4517720; 26196075. DR EuropePMC; PMC5312078; 28196955. DR EuropePMC; PMC92313; 11010887. XX FH Key Location/Qualifiers FH FT source 1..8304 FT /organism="VESV-like calicivirus" FT /strain="Pan-1" FT /mol_type="genomic RNA" FT /db_xref="taxon:82664" FT CDS 20..5662 FT /codon_start=1 FT /product="non-structural polyprotein" FT /note="encodes helicase, protease and polymerase proteins" FT /db_xref="GOA:O92368" FT /db_xref="InterPro:IPR000317" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:O92368" FT /protein_id="AAC61758.1" FT /translation="MAQTLSKISNKESASSGLWPKRFKPHQPIPTWMVRCGLLDHDTRR FT GREPVRASPQVKRVRTPTPYPRHLKPAASAIIRSGTNPSHLKPASMDVVRSGPETLCCE FT AKDGGVVRSCKTCNLKPAHESKAVSFSLPQTDRSTGNEPEFIAEACPSCALYDTCPNCT FT SRVINDDGSTDGTIPSWDQIETTPAFLSLLSNTDEEMSADELTNLEATLRKAFETGSHP FT ANVDYSRDQLQGLLEMAEAALPPSRRQTLPFYQQRLEARRTWREKIFNQPLDEINRILT FT TSKDRFQRCAAWKVILEKAVLAKEYGEEAFAYAQQAIKNINSFDVNLVLKMAAATFIDH FT IRMMTVDNPDLVSYVPKLIVKLKPLTLKMIIDNHENTKEGWLVTLTSLAELYGMVEIAI FT DFVPTVVGNLFDLLMKTTSKMYSMFKSVILATFASESLDFTNPFWYAIAAILCFLITGA FT IPHNGKMKIIKNILSKPTGIVAGIKAIQTLAAMFSTWSNERLVNDLSSRTIAITELNNP FT TITADIDAVINLQRLAEVLREEVKSHTLNPLMQPYTPILRNLMSALDNVISCCTRRKAI FT ATKRTAPVAVILTGPPGCGKTTAAFALAKRLSQQKPSIISLDVDHHDTYTGNEVCIIDE FT FDSSDKVDYANFVVNMVNTNPMVLNCDLIENKAKTFTSKYVIMTSNSETPVKPTSRRAG FT AFYRRVMIVDVTNNAVEKWKSDNPGKAVPKWCFNKDFSHLSLSLRGTEAYSKEYVLDPT FT GRNHQSRRAPHPQQITLEQLAQKMVVQHTTNTSEFVTQAGDVPVFGFVCQNDEIDTVYN FT LLAAVKARYGANYNLYKGMVRTAHENSGCGAHVHVISREDNFRGKAFTVNRSRLESVPH FT LEGDSFRRSLGVVMSDKDVTTMFYYIKGKVINDQVNLTELPANQHVVTVHTVYDMAWAL FT RRHLKWSGQVPNSSKAAFEIMCYPDTAACALRNWMDSTDFSEEHVVTQFIAPGGTIILE FT SCYGARMWATGQRLIRAGGLTEAGGPQGGVRFAGLGARNVPWSEILRELMTLISHIWSQ FT IKGATVVLTALTFYLKRFKPRAEAKGKNKNKGARKNTGVALTDDEYDEWRQYRTEKKLD FT LTVEDFLQLRHRAAMGVDDTDAVKFRCWYSERQRNYHDLEDVTIIGRGGVKRELIRKGP FT LRPRGNDYYDEPDDWYSEGVNDGVTHKNAIVSVDDVDGMHKGYAIHIGHGVYISLKHVV FT SGNAKILSEDPKDLKINGELATFRLNSILPTAVPVGTSKPIKDPWGNPVSTDWQFRNYN FT TTSGSIYGACGSSCSLTRQGDCGLPYVDDHGVVVGLHAGSGGDKCPSRKLIVPYTKVDM FT RIRETCTKGFYKDNKPTISYKGLLVKETDDPRTIMKGTTFHVSPAHTDDYEECTHQPAS FT LGAGDSSCPISLTGIMINNLQPYTEASPGPDTATLNRVSKMLINHMEGYVPKVHKTEED FT MISANYMLNHDTSCGPYLGGRKKDHVKDGVLDKNLLDLLSSKWNRAKLGVALPHEYALG FT LKDELRPKDKVAVGKRRLIWGCDVGVSTVCAAAFKRVSESIMANHALGFIQVGINMDGP FT AVEDLFKRLERPKHDRYCVDYSKWDSTQPPKVTSQSIDILRHFTDKSPIVDSACAALKS FT NPIGIFNGVAFKVAGGLPSGMSLTSIINSLNHCLMVGSAVVKALEDSGVQVTWNIFDSM FT DLFTYGDDGVYIVPPLISSVMPKVFTNLKQFGLKPTRTDKTDAEITPIPADEPVEFLKR FT TIVRTENGIRALLDKSSIIRQFYYIKAENTENWTVPPKKIDTSSRGQQLYNASLYASQH FT GRNLYPQDCPTPERAIEHEGLHIEIPEFHQAITAYNGYFNGTEDQPNQIRLASGGIGLG FT GEVFEN" FT CDS 5668..7797 FT /codon_start=1 FT /product="capsid protein" FT /db_xref="InterPro:IPR004005" FT /db_xref="InterPro:IPR029053" FT /db_xref="InterPro:IPR033703" FT /db_xref="UniProtKB/TrEMBL:O92369" FT /protein_id="AAC61759.1" FT /translation="MATTHTLLSFDDLEFLLHKKDLTDLYGERCGTLNLVINPYDLFLP FT DELDDDWCDDPFNCCFSDVYTSIGTEYSYIDPPELIYEEHCASNGTWLTEHRVTPILPP FT FVITGTHHYYATRPGEVVSGILSKLGSSWDPSLRSTANVESNFTFRAESDGPGSSEIVT FT EEQGTVVQQQPAPAPTALATLATASTGKSVEQEWMTFFSYHTAVNWSTVEPQGKVLYSQ FT ALAPSINPYLDHISKLYSTWSGGIDVRFTVSGSGVFGGKLAALLVPPGVEPIESVSMLQ FT YPHVLFDARQTEPVIFTIPDIRKTLFHTMDDTDTTKLVIMVYNELINPYENGRENKTTC FT SITVETRPSADFTFALLKPPGSIIKHGSIPSDLIPRNSAHWMGNRWCSTITGFSVQPRV FT FQSNRHFDFDSTTTGWSTPYYVPIEIKIRRSDHVDNTRWFKVVDTDKALVPGLPDGWPD FT TTIPEATIASNGNFAYADGFFQEKGVDISKNTTHFKGTYICGTLTTVTIPEGNKGDALA FT EAQKKSHSMYITVAKLDDNSAKPQHKISSQNLLVFFEGTSKNVTMNVTLSQLGFTLVDD FT QPIGSNSSQVVRIATLPEAFTQGGNYPICYVNKVKIGYFDKTSTDCYNSQILMTTQKLA FT EGNYNLPPDSLAVYRITDSASQWFDVGINHDGFSYVGLSDLPSDLQFPLSSTFMGVQLA FT RVKLASKVNTNKVKL" FT CDS 7794..8126 FT /codon_start=1 FT /product="unknown" FT /db_xref="InterPro:IPR007996" FT /db_xref="UniProtKB/TrEMBL:O92370" FT /protein_id="AAC61760.1" FT /translation="MNYANFGLDLLNSVANAAVEGKKLDLASKGLQLKNRALDTERDFF FT YARLAFERYKFDKNNDLKIYGDALRVHALRNAGLRINPYSNGRQIYQDEADLANLHSYY FT SFYKTD" XX SQ Sequence 8304 BP; 2367 A; 2146 C; 1820 G; 1971 T; 0 other; gtaaatgaga atttgagcta tggctcaaac gctctcaaaa atctctaaca aagaaagcgc 60 ctcttcaggc ctttggccta agaggtttaa gccccatcaa cccatcccaa cgtggatggt 120 gcgatgtggg ctccttgacc acgacacacg tcgtggtcgg gaacctgttc gtgcttcgcc 180 acaagtgaag cgcgtcagga cacctacccc ctacccccgc catctcaaac ctgcagcatc 240 tgctataatt aggagtggca ccaatccttc ccatctcaaa cctgcatcaa tggatgtagt 300 taggagtgga cccgaaaccc tttgctgtga agctaaggac ggaggtgtag ttaggagttg 360 caagacctgc aatctcaaac ctgcacacga atccaaggct gtcagcttct cccttcccca 420 aactgacaga tctaccggta acgaacccga attcatcgct gaggcttgcc ctagctgtgc 480 tctttacgac acctgtccaa attgcacgtc tagggtaatc aacgacgatg gctcgactga 540 cggaactatt ccatcttggg accagattga aacaacacct gctttcctat ctctactctc 600 caataccgat gaggaaatgt cagcagatga gctcaccaac ctggaggcca ccctgcgaaa 660 ggctttcgag actggatcac acccggctaa tgttgactac tccagggatc aactccaagg 720 acttctggaa atggctgaag ctgcactccc accctcaagg agacagaccc taccattcta 780 ccaacagaga cttgaagctc gcaggacttg gcgtgagaaa atcttcaacc aaccattgga 840 cgaaataaac agaattctca caacatcaaa agaccggttc caacgctgcg ctgcctggaa 900 agtgatactt gaaaaggctg ttctagctaa ggaatacggt gaggaggcct ttgcttacgc 960 gcaacaggca atcaaaaaca ttaattcatt tgatgtcaac ctggtactga aaatggccgc 1020 agcaacattc atcgatcaca tcaggatgat gactgtggac aacccagatt tggtctctta 1080 cgtcccaaaa ctgattgtca aattgaaacc gctcacactg aagatgataa ttgacaacca 1140 tgagaacaca aaagaaggtt ggctcgtcac actaaccagc cttgctgagc tctacggcat 1200 ggtcgagatc gcaattgatt tcgttccaac cgtggtgggg aacctgtttg atctgctcat 1260 gaaaacaaca tctaagatgt acagcatgtt caaatcagtg atacttgcaa cattcgcatc 1320 tgaatctctt gacttcacca acccgttctg gtatgccatc gcggcaatac tttgcttcct 1380 gattacagga gccattccac acaacgggaa aatgaagata atcaagaaca tcctatccaa 1440 gcccactggc attgtggcgg ggatcaaggc catccagact cttgcggcca tgttctccac 1500 gtggtcgaac gagagactgg tgaatgacct atcgtcaaga acaattgcaa tcactgaatt 1560 gaacaacccc acaatcacag ctgacatcga tgcagtcatc aatttgcaaa gattggcaga 1620 agtgcttcgg gaagaggtga aatcccacac tctcaacccg ctcatgcaac catacacacc 1680 aattctaaga aacctgatgt ccgcgcttga caacgtgata tcctgttgca caagacggaa 1740 agcgatcgct acaaagagaa cagcacccgt tgctgtgatc ttgaccggac ccccagggtg 1800 tggcaagacc acagcggcat ttgctctcgc aaagcgattg tcacaacaga agccatccat 1860 catatccctt gatgtcgacc atcacgacac ctacacagga aatgaggtgt gtatcatcga 1920 tgagttcgac tcatctgata aggttgatta cgccaacttt gtagtcaaca tggtcaacac 1980 caaccccatg gtactaaatt gtgatctgat tgagaacaaa gccaaaacat tcacatccaa 2040 gtatgttatt atgacatcaa attctgaaac accagtcaaa ccaacatcaa gacgtgccgg 2100 tgcattctac cgtcgcgtga tgatcgttga tgtcaccaac aatgctgtag agaagtggaa 2160 gagcgacaac ccagggaagg ctgtcccaaa atggtgcttt aacaaagact tctcccactt 2220 gagcttgtcc cttaggggaa ccgaagcgta ttctaaggag tacgtattgg atcccactgg 2280 tagaaaccac caatcccggc gagctcccca tccccagcaa atcacacttg aacaattagc 2340 ccaaaagatg gttgttcaac acacaaccaa caccagcgaa ttcgttacgc aagctggtga 2400 tgtcccagta tttggatttg tctgtcaaaa tgatgaaatt gacactgtct acaacctgct 2460 tgctgccgtt aaggccaggt acggtgcaaa ttacaatttg tacaagggca tggtaagaac 2520 tgcacacgag aacagtgggt gtggggccca cgttcacgtg atctctagag aagataactt 2580 cagaggaaag gcattcactg tcaacagatc tagacttgaa tctgttcccc atctagaggg 2640 agactccttt aggaggtccc tcggtgttgt catgtccgat aaggacgtga cgacaatgtt 2700 ctactacatc aaggggaaag tgatcaacga tcaggtgaac ttgactgaac taccggccaa 2760 tcaacacgtg gtaacggtcc acactgtgta tgatatggcc tgggctcttc gaaggcacct 2820 gaagtggtct ggacaagtgc caaactcatc caaggctgcc tttgaaatca tgtgttaccc 2880 agacactgca gcctgtgcac tacggaattg gatggattct acagactttt ccgaagagca 2940 cgttgtcaca cagttcattg cccctggtgg aaccatcatc ctcgagtcat gctatggcgc 3000 acgcatgtgg gccacaggcc agcgcctcat ccgcgctggt ggactcacag aggccggtgg 3060 acctcaaggg ggagtcagat ttgctggcct tggtgcccgg aatgtaccct ggagtgaaat 3120 tctcagagaa ctcatgacct tgatctcaca catttggtcc caaattaaag gtgcaacagt 3180 tgtcctaaca gccctcacat tctacctgaa aaggttcaag cctcgtgctg aagccaaggg 3240 aaagaataag aacaaaggcg ccaggaagaa cactggcgtt gcgctcacag atgatgagta 3300 cgatgaatgg aggcagtaca gaactgaaaa gaagcttgac ctcacggtcg aagacttcct 3360 ccaactcaga catcgtgctg caatgggcgt cgatgatacc gatgccgtca aatttcggtg 3420 ttggtactca gaaagacaaa ggaactacca tgatttggaa gatgtcacca taattggccg 3480 tggtggcgtg aaacgtgaac tcatccgaaa aggaccactg cgacctcgcg gaaatgacta 3540 ctacgatgaa ccagacgatt ggtactcaga aggggtcaat gacggtgtca cacacaagaa 3600 tgctattgtc agcgtcgatg acgtggacgg catgcacaag gggtacgcaa tccacattgg 3660 tcatggagtt tacatttcac tgaagcatgt ggtgtcagga aatgccaaaa tcttatcaga 3720 agatccaaaa gacctaaaga tcaatggtga attggcaact ttcagattga acagcatact 3780 ccctacggct gtgccggttg ggacgtccaa acccatcaaa gacccgtggg ggaacccggt 3840 ctcaacggat tggcagttca gaaactacaa cacaacctct ggaagcatct atggagcttg 3900 cggctcatca tgttctttga cacgacaggg cgactgcggt ctcccatacg ttgatgatca 3960 tggtgtagtc gtcggactcc acgctggatc tggtggtgac aagtgcccat ctcggaaact 4020 cattgtccct tacacaaagg ttgacatgag gatccgtgag acttgcacta aggggttcta 4080 caaggataac aaaccaacaa tatcctacaa agggctcctt gtgaaagaaa ccgatgatcc 4140 caggaccatc atgaagggca caacattcca cgtctcgcca gcccacactg acgactatga 4200 ggagtgtaca caccaacccg cgtcactcgg cgccggtgat tccagttgtc caatatccct 4260 cacagggata atgatcaaca accttcagcc ctacacagaa gcttcaccag gaccagacac 4320 tgccacccta aaccgggtct caaagatgct gatcaaccac atggaaggat atgttccaaa 4380 agtccacaaa actgaagaag acatgatttc tgcaaactac atgctcaacc acgacacctc 4440 ctgtggccca tacctcggtg gccgcaagaa agatcatgtc aaagatggag tgttagacaa 4500 aaaccttctt gacctcctca gttcaaagtg gaatcgtgca aagttggggg tggctctccc 4560 acatgagtat gcccttggcc tcaaagatga acttcgacca aaagacaagg tcgcagtcgg 4620 gaagcgtagg ctcatctggg gctgcgatgt tggcgtcagc acagtttgtg ccgctgcctt 4680 caaacgcgtc tcagagtcaa tcatggcaaa ccacgctctc ggcttcatcc aagttggcat 4740 caacatggac ggacctgctg ttgaagatct cttcaaaagg ctcgaacgac caaagcacga 4800 tcggtattgt gttgactact caaagtggga ctcaacccaa ccaccaaaag taacatccca 4860 atcaattgac atcctcaggc atttcactga caaatctcca attgttgatt cggcatgtgc 4920 agcactcaaa tcaaacccaa tcggaatttt caatggtgtt gcattcaagg tggctggtgg 4980 gttgccttcg ggtatgtcac tgacatccat catcaactcg ctcaatcact gcctcatggt 5040 gggctcagct gttgtcaagg cactcgagga ctctggcgtg caagtgacat ggaacatctt 5100 cgactcgatg gacctattca catatggtga tgacggggtc tacatcgtcc caccactcat 5160 atcatctgtc atgcccaaag tcttcaccaa cctgaaacag tttggtctga aaccgacccg 5220 gaccgacaaa acggatgctg agataacgcc tatccctgct gatgaaccag ttgagtttct 5280 caagcgaact attgttcgca ctgagaatgg catacgagca cttcttgaca aatcctccat 5340 aattcggcaa ttctactaca tcaaagcaga aaacactgaa aattggactg ttccaccaaa 5400 gaaaattgat acctcatctc gaggtcaaca actctacaat gcaagtctct atgccagtca 5460 acatgggagg aatctatacc cgcaagattg tcccactccc gagcgggcaa ttgagcatga 5520 gggtctacac attgaaatcc cggaattcca tcaagctatc acagcttaca acgggtactt 5580 caatggtacc gaggaccaac caaaccagat tcgtctcgca agtggtggaa ttgggctcgg 5640 tggtgaggtg tttgagaatt agccactatg gctactactc acacgcttct gtcgtttgac 5700 gacctcgaat ttctcttgca caagaaagac ctaaccgatc tctacggaga gaggtgcggt 5760 acactcaacc tggtcatcaa tccttatgat ctatttcttc ctgatgaact tgatgatgat 5820 tggtgtgatg atcctttcaa ctgctgcttt tctgatgtct atacttctat aggaactgaa 5880 tacagctaca ttgatcctcc tgagctcatc tatgaagaac attgtgcatc gaacggcacc 5940 tggctgacgg aacaccgtgt cacgccgatc ctccccccgt tcgtcataac ggggacccac 6000 cactactacg ccacaagacc cggtgaagtt gttagtggga ttttgtccaa acttggctct 6060 tcttgggatc cttcccttcg gtccaccgcg aacgttgaat caaactttac gttcagggcc 6120 gaatcggatg gtccagggag ctccgagatt gtgaccgagg agcaaggaac cgttgtgcag 6180 caacaacctg cacctgcacc aacagcattg gcgactctcg ccactgcatc aacaggaaaa 6240 tcagttgaac aagaatggat gactttcttt tcctatcata ctgctgttaa ctggtcaaca 6300 gtggaacctc aaggaaaagt gctttactca caagcacttg ccccatcaat taatccgtat 6360 cttgaccaca tatccaaact gtactcaacg tggtctggcg gtatcgatgt taggttcacc 6420 gtctctggat ccggagtgtt cggcggcaaa ctcgctgcac tcttggttcc cccaggcgtc 6480 gagcccatcg aatctgttag catgttgcag tacccacacg ttttatttga cgcacgccaa 6540 actgaacctg tgatcttcac catccctgac atccggaaga ccctcttcca caccatggat 6600 gacacagata caacaaagct tgtgatcatg gtatacaatg agttgataaa cccctatgag 6660 aatggtaggg agaacaagac cacttgctcc atcactgttg agaccagacc ttctgctgac 6720 tttactttcg ctctcctgaa accccctggc tccattatca aacatggctc aattccatct 6780 gatctgatac ctagaaactc tgctcactgg atgggaaacc gctggtgcag cacgattact 6840 gggttttcag ttcagccacg tgtgttccag tcgaatcgcc actttgactt cgattcaaca 6900 acaacagggt ggtcaacccc gtactatgtc ccaattgaga ttaaaattag aaggtcggac 6960 catgtagaca acactcgttg gttcaaagtt gttgacactg ataaggcact tgtgcctggg 7020 ctaccagatg gatggcccga cacaactatc cctgaggcaa ccattgcttc aaatggcaac 7080 ttcgcttacg cagacggatt ctttcaagaa aaaggtgtcg acatctccaa aaacaccaca 7140 cactttaaag ggacatacat ctgtggaaca ctaacaactg tgacaatccc agagggaaac 7200 aaaggtgatg ccctggctga ggctcagaag aaatcccatt caatgtacat cacagttgcc 7260 aaactcgatg acaacagtgc caaaccacaa cacaagatct cctcacagaa tctacttgtg 7320 ttctttgaag gtacaagcaa aaatgtgacc atgaacgtca ccctgagtca acttgggttt 7380 acacttgtgg atgatcaacc catcggttca aactcatcac aggttgtgag gattgcaacg 7440 ctcccagaag cctttacaca aggagggaac taccccatat gttatgtgaa caaagtgaaa 7500 attggatact ttgacaagac atcaactgat tgttacaaca gccaaattct aatgaccaca 7560 cagaaacttg ctgagggcaa ctacaacttg cctcctgact ctctcgctgt ctacagaatc 7620 actgattctg cttcccagtg gtttgacgtg ggaattaacc atgatggctt ttcctacgtt 7680 ggtctttcag atcttcctag tgatcttcaa tttccccttt cttcaacctt catgggagtg 7740 caactagcgc gagtgaagct agcctcaaag gttaacacca ataaagttaa gttatgaatt 7800 atgcaaattt cggcctcgac ctcctaaaca gcgtcgcaaa tgcagctgtt gaaggcaaaa 7860 agctagattt ggcatccaaa ggattgcaat tgaaaaaccg tgcactggac acagagcgcg 7920 acttcttcta cgcaagactt gcatttgaaa gatacaaatt tgacaagaat aacgacctaa 7980 agatctacgg tgatgcgtta cgcgtccatg ctcttcggaa cgctggccta cgcataaacc 8040 cgtactcaaa tggtcgccaa atttatcaag atgaagctga tcttgcaaat ctgcactctt 8100 actatagctt ctacaaaacg gactagttcc aacctgctta acaattttct aaaactttag 8160 cctatgcttt atttcctttt atcagttcct taattagtta gttaagtgtt ttatacttca 8220 cctctgtcta tctatttaat caatgggata attgttctta atctagtaga ctgtagaatt 8280 agctaattgg taggttgcat tagg 8304 //