ID AF076239; SV 3; linear; genomic RNA; STD; VRL; 7194 BP. XX AC AF076239; XX DT 20-JUL-1998 (Rel. 56, Created) DT 10-FEB-2001 (Rel. 66, Last updated, Version 5) XX DE Hepatitis E virus from Hyderabad, India, complete genome. XX KW . XX OS Paslahepevirus balayani OC Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; OC Hepelivirales; Hepeviridae; Orthohepevirinae; Paslahepevirus. XX RN [1] RP 1-7194 RX DOI; 10.1128/JVI.74.5.2430-2437.2000. RX PUBMED; 10666275. RA Panda S.K., Ansari I.H., Durgapal H., Agrawal S., Jameel S.; RT "The in vitro-synthesized RNA from a cDNA clone of hepatitis E virus is RT infectious"; RL J. Virol. 74(5):2430-2437(2000). XX RN [2] RP 1-7194 RA Ansari I.H., Nanda S.K., Durgapal H., Jameel S., Panda S.K.; RT "Translational analysis of complete HEV genome"; RL Unpublished. XX RN [3] RP 1-7194 RA Ansari I.H., Nanda S.K., Durgapal H., Jameel S., Panda S.K.; RT ; RL Submitted (02-JUL-1998) to the INSDC. RL Pathology, All India Institute of Medical Sciences, Ansari Nagar, New Delhi RL 110029, India XX RN [4] RC Sequence update by submitter RP 1-7194 RA Ansari I.H., Nanda S.K., Durgapal H., Jameel S., Panda S.K.; RT ; RL Submitted (20-APR-1999) to the INSDC. RL Pathology, All India Institute of Medical Sciences, Ansari Nagar, New Delhi RL 110029, India XX RN [5] RC Sequence update by submitter RP 1-7194 RA Ansari I.H., Nanda S.K., Durgapal H., Jameel S., Panda S.K.; RT ; RL Submitted (08-FEB-2001) to the INSDC. RL Pathology, All India Institute of Medical Sciences, Ansari Nagar, New Delhi RL 110029, India XX DR MD5; f52424fd37f2ad7566ab0fdef7f2c806. DR EuropePMC; PMC1112134; 15890906. DR EuropePMC; PMC111726; 10666275. DR EuropePMC; PMC1168788; 15994825. DR EuropePMC; PMC130758; 12202555. DR EuropePMC; PMC139663; 12409397. DR EuropePMC; PMC140370; 11923352. DR EuropePMC; PMC1899872; 17695601. DR EuropePMC; PMC2753377; 19651539. DR EuropePMC; PMC3294992; 20735936. DR EuropePMC; PMC3381554; 21801630. DR EuropePMC; PMC3624379; 23388713. DR EuropePMC; PMC4100120; 24886818. DR EuropePMC; PMC4277416; 25542033. DR EuropePMC; PMC4572330; 15237431. DR EuropePMC; PMC4676335; 24974734. DR EuropePMC; PMC5011639; 27630719. DR EuropePMC; PMC5320732; 28222808. DR RFAM; RF00550; HepE_CRE. XX CC On Feb 8, 2001 this sequence version replaced gi:4589367. XX FH Key Location/Qualifiers FH FT source 1..7194 FT /organism="Paslahepevirus balayani" FT /mol_type="genomic RNA" FT /country="India: Hyderabad" FT /db_xref="taxon:1678143" FT CDS 28..5109 FT /codon_start=1 FT /product="non structural protein" FT /note="orf1" FT /db_xref="GOA:Q9WC28" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR002589" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008748" FT /db_xref="InterPro:IPR022202" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/Swiss-Prot:Q9WC28" FT /func_characterised="identical sequence" FT /protein_id="AAC27934.2" FT /translation="MEAHQFLKAPGITTAVEQAALATANSALANAVVVRPFLSHQQIEI FT LINLMQPRQLVFRPEVFWNQPIQRVIHNELELYCRARSGRCLEIGAHPRSINDNPNVVH FT RCFLRPVGRDVQRWYTAPTRGPAANCRRSALRGLPAADRTYCFDGFSGCSCPAETGIAL FT YSLHDMSPSDVAEAMFRHGMTRLYAALHLPPEVLLPPGTYRTASYLLIHDGRRVVVTYE FT GDTSAGYNHDVSNLRSWIRTTKVTGDHPLVIERVRAIGCHFVLLLTAAPEPSPMPYVPY FT PRSTEVYVRSIFGPGGTPSLFPTSCSTKSTFHAVPAHIWDRLMLFGATLDDQAFCCSRL FT MTYLRGISYKVTVGTLVANEGRNASEDALTAVITAAYLTICHQRYLRTQAISKGIRRLE FT REHDQKFITRLYSWLFEKSGRDYIPGRQLEFYAQCRRWLSAGFHLDPRVLVFDESAPCH FT CRTVIRKALSKFCCFMKWLGQECTCFLQPAEGVVGDQGHDNESYEGSDVDPAESAISDI FT SGSYVVPGTALQPLYQALDLPDEIVARACRLTATVKVSQVDGRIDCETLLGNKTFRTSF FT VDGAVLETNGPERHNLSFDASQSTMAAGPFSLTYAASAAGLEVRYVGAGLDHRAIFAPG FT VSPRSNPGEVTAFCSALYRFNREAQRHSLTGNLWFHPEGLIGLFAPFSPGHVWESAKPF FT CGESTLYTRTWSEVDAVSSPTRPDLGFMSEPPIPSRAATPTLAAPLPPLAPDPSPPSSA FT PALDEPASAATSGVPAITHQTARHRRLLFTYPDGSKVFAGSLFESTCTWLVNASNVDHC FT PGGGLCHAFYQRYPASFDAACFVMRDGAAAYTLTPRPIIHRVAPDYRLEHNPKRLEAAY FT RETCSRLGTAAYPLLGTGIYQVPIGPSFDAWERNHRPGDELYLPELAARWFEANRPTRP FT TLTITEDAARTANLAIELDSATDVGRACAGCRVTPGVVQYQFTAGVPGSGKSRSITRAD FT VDVVVVPTRELRNAWRRRGFAAFTPHTAARVTDGRRVVIDEAPSLPPHLLLLHMQRAAT FT VHLLGDPNQIPAIDFEHPGLVPAIRPDLAPTSWWHVTHRCPADVCELIRGAYPMIQTTS FT RVLRSLFWGEPAVGQKLVFTQAAKPANPGSVTVHDSQGATYTYTTIIATADARGLIQSS FT RAHAIVALTRHTEKWVIIDAPGLLREVGISDAIVNNFFLAGGEIGHQRPSVIPRGNPDA FT NVDTLAAFPPSCQISAFHQLAEELGHRPAPVAAVLPPCPELEQGLLYLPQELTTCDSVV FT TFELTDIVHCRMAAPSQRKAVVSTLVGRYGRRTKLYNASHSDVRDSLARFIPAIGPVQV FT TTCELYELVEAMVEKGQDGSAVLELDLCNRDVSRITFFQKDCNKFTTGETIAHGKVGQG FT ISAWSKTFCALFGPWFRAIEKAILALLPQGVFYGDAFDDTVFSAAVAAAKASMVFENDF FT SEFDSTQNNFSLGLECAIMEECGMPQGLIRLYHLIRSAWILQAPKESLLGFWKKHSGEP FT GTLLWNTVWNMAVITHCYDFRDLQVAAFKGDDSIVLCSEYRQSPGAAVLIAGCGLKLKV FT DFRPMRLYAGVVVAPGLGALPDVVRFAGRLTEKNWGPGPERADELRIAVSDFLRKLTNV FT AQMCVDVVSRVYGVSPGLVHNLIGMLQAVADGKAHFTESVKPVLDLTNSILCRVE" FT CDS 5106..5477 FT /codon_start=1 FT /product="structural protein" FT /note="orf3" FT /db_xref="GOA:O90299" FT /db_xref="InterPro:IPR003384" FT /db_xref="UniProtKB/Swiss-Prot:O90299" FT /func_characterised="similar sequence" FT /protein_id="AAC27935.1" FT /translation="MNNMSFAAPMGSRPWALGLFCCCSSCFCLCCSRHRPVSRLAAVVG FT GAAAVPAVVSGVTGLILSPSQSPIFIQPTPSPRMSPLRPGLDLVFANPSDHSAPLGATR FT PSAPPLPHVVDLPQLGPRR" FT CDS 5147..7129 FT /codon_start=1 FT /product="structural protein" FT /note="orf2" FT /db_xref="GOA:Q68985" FT /db_xref="InterPro:IPR004261" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/Swiss-Prot:Q68985" FT /func_characterised="identical sequence" FT /protein_id="AAC27936.1" FT /translation="MGPRPILLLFLMFLPMLLAPPPGQPSGRRRGRRSGGSGGGFWGDR FT VDSQPFAIPYIHPTNPFAPNVTAAAGAGPRVRQPVRPLGSAWRDQAQRPAAASRRRPTT FT AGAAPLTAVAPAHDTPPVPDVDSRGAILRRQYNLSTSPLTSSVATGTNLVLYAAPLSPL FT LPLQDGTNTHIMATEASNYAQYRVARATIRYRPLVPNAVGGYAISISFWPQTTPTPTSV FT DMNSITSTDVRILVQPGIASELVIPSERLHYRNQGWRSVETSGVAEEEATSGLVMLCIH FT GSPVNSYTNTPYTGALGLLDFALELEFRNLTPGNTNTRVSRYSSTARHRLRRGADGTAE FT LTTTAATRFMKDLYFTSTNGVGEIGRGIALTLFNLADTLLGGLPTELISSAGGQLFYSR FT PVVSANGEPTVKLYTSVENAQQDKGIAIPNDIDLGESRVVIQDYDNQHEQDRPTPSPAP FT SRPFSVLRANDVLWLSLTAAEYDQSTYGSSTGPVYVSDSVTLVNVATGAQAVARSLDWT FT KVTLDGRPLSTIQQYSKIFFVLPLRGKLSFWEAGTTRPGYPYNYNTTASDQLLVENAAG FT HRVAISTYTTSLGAGPVSISAVAVLGPHSALALLEDTLDYPARAHTFDDFCPECRPLGL FT QGCAFQSTVAELQRLKMKVGKTREL" XX SQ Sequence 7194 BP; 1227 A; 2290 C; 1860 G; 1817 T; 0 other; aggcagacca catatgtggt cgatgccatg gaggcccatc agtttctcaa ggctcccggc 60 atcactactg ctgttgagca ggctgctcta gccacggcca actctgccct ggcgaatgct 120 gtggtagtta ggccttttct ttctcaccag cagattgaga ttctcattaa cctaatgcaa 180 cctcgccagc ttgttttccg ccccgaggtt ttctggaatc aacccatcca gcgtgtcatt 240 cataacgagc tggagcttta ctgccgcgct cgctccggcc gctgtcttga aattggcgcc 300 catccccgct caataaatga taatcctaat gtggtccacc gctgcttcct ccgccctgtt 360 gggcgtgatg ttcagcgctg gtatactgct cccactcgcg ggccggctgc taattgccgc 420 cgttccgcgt tgcgtgggct tcccgctgct gaccgcacat actgcttcga cgggttttct 480 ggctgtagct gccccgccga gacgggtatc gccctttact ccctccatga tatgtcacca 540 tctgatgttg ccgaggccat gttccgccat ggtatgacgc ggctttatgc tgccctccat 600 cttccgcctg aggtcttgct gccccctggc acatatcgca ccgcatcgta tttgctgatt 660 catgacggca ggcgcgttgt ggtgacgtat gagggtgata ctagtgctgg ttacaaccac 720 gatgtctcca acttgcgctc ctggattaga accaccaagg ttaccggaga ccatcccctc 780 gttatcgagc gggttagggc cattggctgc cactttgttc tcttgctcac ggcagccccg 840 gagccatcac ctatgcctta tgttccttac ccccggtcta ccgaggtcta tgtccgatcg 900 atcttcggcc cgggtggtac cccttcctta ttcccaacct catgctccac taagtcgacc 960 ttccacgctg tccctgccca tatttgggac cgtcttatgc tgttcggggc caccttggat 1020 gaccaagcct tttgctgctc ccgtttaatg acctaccttc gcggcattag ctacaaggtc 1080 actgttggta cccttgtggc taatgaaggc cggaacgcct ctgaggacgc cctcacagct 1140 gtcatcactg ccgcctatct taccatttgc caccagcggt atctccgcac ccaggctata 1200 tccaagggga tccgtcgtct tgaacgggag catgaccaga agtttataac acgcctttac 1260 agctggctct tcgagaagtc cggccgtgat tacatccctg gccgtcagtt ggagttctac 1320 gcccagtgta ggcgctggct ttcggccggc tttcatcttg atccacgtgt actggttttt 1380 gacgagtcgg ccccctgcca ttgtaggact gtgatccgca aggcgctctc gaagttttgc 1440 tgctttatga agtggcttgg tcaggagtgc acctgttttc ttcaacctgc agaaggcgtc 1500 gtcggcgacc agggtcatga taacgaatcc tatgaggggt ccgatgttga ccctgctgag 1560 tccgccatta gtgacatctc tgggtcctat gtcgtccctg gcacagccct ccaaccgctc 1620 taccaggccc tcgatctccc cgatgagatt gtggctcgcg cgtgccggct gaccgccaca 1680 gtaaaggtct cccaggtcga tgggcggatc gattgcgaga cccttcttgg taacaaaacc 1740 ttccgcacgt cgtttgtcga cggggcggtc ttagagacca atggcccaga gcgccacaat 1800 ctctcctttg atgccagtca gagcactatg gccgctggcc ctttcagtct cacctatgcc 1860 gcctctgcag ctgggctgga ggtgcgctat gttggtgccg ggcttgacca tcgggcgatt 1920 tttgcccccg gtgtttcacc ccggtcaaac cccggcgagg tcaccgcctt ctgctctgcc 1980 ctatataggt tcaaccgtga ggcccagcgc cattcgctga ccggtaactt atggttccat 2040 cctgaggggc ttattggcct ctttgccccg ttttcgcctg ggcatgtctg ggagtcggct 2100 aaaccattct gtggcgagag cacactttac acccgtactt ggtcggaggt tgatgccgtc 2160 tctagtccaa cccggcccga tttgggtttt atgtctgagc ctcctatacc tagtagggcc 2220 gccacgccta ccttggcggc ccctctaccc ccccttgcac cggacccttc ccctccttct 2280 tctgccccgg cgctcgatga gccggcttct gccgctacct ccggggtccc ggccataacc 2340 caccagacgg cccggcaccg ccgcctgctc ttcacctacc cggatggctc taaggtattc 2400 gccggctcgc tgttcgagtc gacatgcacg tggctcgtta acgcgtctaa tgttgaccac 2460 tgccctggcg gcgggctttg ccatgcattt taccaaaggt accccgcctc ctttgatgct 2520 gcctgttttg tgatgcgcga cggtgcggcc gcgtacacac tgaccccccg gccaataatt 2580 catcgtgtcg cccctgatta taggttggaa cataacccaa agaggcttga ggctgcttat 2640 cgggagactt gttcccgcct cggtaccgct gcatacccgc tcctcgggac cggcatatac 2700 caggtgccga tcggtcccag ctttgacgcc tgggagcgga accaccgccc cggggatgag 2760 ttgtaccttc ctgaacttgc tgccagatgg tttgaggcca ataggccgac ccgcccaact 2820 ctcactataa ctgaggatgc tgcacggaca gcgaatctgg ccatcgagct tgactcagcc 2880 acagatgtcg gccgggcctg tgctggctgt cgggttaccc ctggcgttgt tcaataccag 2940 tttaccgcag gtgtgcctgg atccggcaag tcccgctcca tcacccgagc cgatgtggac 3000 gttgtcgtgg tcccgacgcg cgagttgcgt aatgcctggc gccgtcgcgg ctttgctgcc 3060 ttcaccccgc acactgccgc tagagtcacc gacgggcgcc gggttgtcat tgatgaggct 3120 ccatccctcc cccctcacct gttgctgctc cacatgcagc gggccgccac cgtccacctt 3180 cttggcgacc cgaatcagat cccagccatc gactttgagc accctgggct cgtccccgcc 3240 atcaggcccg acttagcccc tacctcctgg tggcatgtta cccatcgctg ccctgcggat 3300 gtatgtgagt tgatccgtgg tgcatacccc atgatccaga ccactagccg ggttctccgt 3360 tcgttgttct ggggtgagcc tgccgtcggg cagaaactag tgttcaccca ggcggccaag 3420 cccgccaacc ccggctcagt gacggtccac gattcgcagg gcgctaccta cacttatacc 3480 actattattg ccacagcaga tgcccggggc cttattcagt cgtctcgggc tcatgccatt 3540 gttgctctga cgcgccacac tgagaagtgg gtcatcattg acgcaccagg cctgcttcgc 3600 gaggtgggca tctccgatgc aatcgttaat aactttttcc tcgctggtgg cgaaattggt 3660 catcagcgcc catctgttat tccccgtggc aaccctgacg ccaatgttga caccctggct 3720 gccttcccac cgtcttgcca gattagtgcc ttccatcagt tagctgagga gctcggccac 3780 agacctgccc ctgttgcagc tgttctacca ccctgccccg agctcgaaca gggcctcctc 3840 tatctgcccc aggagctcac cacctgtgat agtgtcgtaa catttgaatt aacagatatt 3900 gtgcactgcc gcatggccgc cccgagccag cgcaaggccg tagtgtccac actcgtgggc 3960 cgctacggcc gtcgcacaaa gctctacaat gcttcccact ctgatgttcg cgactctctc 4020 gcccgtttta tccctgccat tggccccgta caggtcacaa cctgtgaatt gtacgagtta 4080 gtggaggcca tggtcgagaa gggccaggat ggctccgccg tccttgagct cgatctttgc 4140 aaccgtgatg tgtccaggat caccttcttc cagaaagatt gtaacaagtt caccacaggt 4200 gagaccattg ctcatggtaa agtgggccag ggcatctcgg cctggagcaa gaccttctgc 4260 gccctctttg gcccttggtt tcgcgccatt gagaaggcta ttctggcctt gctccctcag 4320 ggtgtgtttt acggtgatgc ctttgatgac accgtcttct cagcggctgt ggccgcagca 4380 aaggcatcca tggtgtttga gaatgacttt tctgagtttg actccaccca gaataacttt 4440 tctttgggtc tagagtgtgc tattatggag gagtgcggga tgccgcaggg gctcatccgc 4500 ttgtatcacc ttataaggtc tgcgtggatc ctgcaggccc cgaaggagtc tctgctaggg 4560 ttttggaaga aacactccgg cgagcccggc actcttctat ggaatactgt ctggaatatg 4620 gctgttatta cccactgtta tgacttccgc gatttgcagg tagctgcctt taaaggtgat 4680 gattcgatag tgctttgcag tgagtatcgt cagagtccag gagctgctgt cctgatcgcc 4740 ggctgtggct tgaagttgaa ggtagatttc cgcccgatgc gtttgtatgc aggtgttgtg 4800 gtggcccccg gccttggcgc gcttcctgat gtcgtgcgct tcgccggccg gcttaccgag 4860 aagaattggg gccctggccc tgagcgggcg gacgagctcc gcatcgctgt tagtgacttc 4920 ctccgcaagc tcacgaatgt ggctcagatg tgtgtggatg ttgtttcccg tgtttatggg 4980 gtttcccctg ggctcgttca taacctgatt ggcatgctac aggctgttgc tgatggcaag 5040 gcacatttca ctgagtcagt aaaaccagtg ctcgacctga caaattcaat cttgtgtcgg 5100 gtggaatgaa taacatgtct tttgctgcgc ccatgggttc gcgaccatgg gccctcggcc 5160 tattttgttg ctgttcctca tgtttctgcc tatgctgctc gcgccaccgc ccggtcagcc 5220 gtctggccgc cgtcgtgggc ggcgcagcgg cggttccggc ggtggtttct ggggtgaccg 5280 ggttgattct cagcccttcg caatccccta tattcatcca accaacccct tcgccccgaa 5340 tgtcaccgct gcggccgggg ctggacctcg tgttcgccaa cccgtccgac cactcggctc 5400 cgcttggcgc gaccaggccc agcgccccgc cgctgcctca cgtcgtagac ctaccacagc 5460 tggggccgcg ccgctaaccg cggtcgctcc ggcccatgac accccgccag tgcctgatgt 5520 cgactcccgc ggcgccatct tgcgccggca gtacaaccta tcaacatctc cccttacctc 5580 ttccgtggcc accggtacta acctggttct ttatgccgcc cctcttagtc cgcttttacc 5640 ccttcaggac ggtaccaata ctcatataat ggccacggaa gcttctaatt atgcccagta 5700 ccgggttgcc cgtgccacga tccgttaccg cccgctggtc cccaacgctg tcggcggtta 5760 cgccatctcc atctcattct ggccacagac tacccccacc ccgacgtccg ttgatatgaa 5820 ttcaataacc tcgacggatg ttcgcatttt agtccagccc ggcatagcct ctgagcttgt 5880 gatcccaagc gagcgcctac actatcgtaa ccaaggttgg cgctctgtcg agacctccgg 5940 ggtggccgag gaggaggcca cctccggtct tgttatgctt tgcatacatg gctcacccgt 6000 aaattcctat actaatacac cctataccgg tgcccttggg ctgctggact ttgcccttga 6060 gcttgagttt cgcaacctta cccccggtaa tactaatacg cgggtctccc gttattccag 6120 cactgctcgc caccgccttc gtcgcggtgc ggacgggact gccgagctca ccaccacggc 6180 tgctacccgc tttatgaagg acctctattt tactagtact aatggtgttg gtgagatcgg 6240 ccgcgggata gccctcaccc tgttcaacct tgctgacact ttgcttggcg gcctgccgac 6300 agaattgatt tcgtcggctg gtggccagct gttctactcc cgtcccgttg tctcagccaa 6360 tggcgagccg actgttaagc tgtatacatc tgtagagaat gctcagcagg ataagggtat 6420 tgcaatcccg aatgatattg acctcggaga atctcgtgtg gttatccagg attatgataa 6480 ccaacatgaa caagaccggc cgacgccttc tccagccccg tcgcgccctt tctctgttct 6540 tcgagctaat gatgtgcttt ggctctctct caccgctgcc gagtatgacc agtccaccta 6600 tggctcttcg actggcccag tttatgtttc tgactctgtg accttggtta atgttgccac 6660 cggcgcgcag gccgttgccc ggtcgctcga ttggaccaag gtcacacttg acggtcgccc 6720 tctctccacc atccagcagt attcgaagat cttctttgtc ctgccgctcc gcgggaagct 6780 ctctttctgg gaggcaggca caactaggcc cgggtaccct tataattaca acaccactgc 6840 aagcgaccaa ctgcttgtcg agaatgccgc cgggcaccgg gttgctattt ccacttacac 6900 cactagcctg ggtgctggcc ccgtctctat ttctgcggtt gccgtcttag gcccccactc 6960 tgcgctagca ttgcttgagg atactttgga ttaccctgcc cgcgcccata cttttgatga 7020 cttctgccca gagtgccgcc cccttggcct ccagggctgc gctttccagt ctactgtcgc 7080 tgagctccag cgccttaaga tgaaggtggg taaaactcgg gagttatagt ttatttgctt 7140 gtgcccccct tctctctgtt gcttatttct catttctgcg ttccgcgctc cctg 7194 //