Dbfetch
ID AF072672; SV 1; circular; genomic DNA; STD; VRL; 2735 BP. XX AC AF072672; XX DT 17-AUG-1999 (Rel. 60, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 5) XX DE Sugarcane streak virus reunion, complete genome. XX KW . XX OS Sugarcane streak Reunion virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2735 RX DOI; 10.1007/s007050050647. RX PUBMED; 10664387. RA Bigarre L., Salah M., Granier M., Frutos R., Thouvenel J., Peterschmitt M.; RT "Nucleotide sequence evidence for three distinct sugarcane streak RT mastreviruses"; RL Arch. Virol. 144(12):2331-2344(1999). XX RN [2] RP 1-2735 RA Bigarre L., Salah M., Granier M., Peterschmitt M., Thouvenel J.C.; RT ; RL Submitted (18-JUN-1998) to the INSDC. RL LPRC, ORSTOM/CIRAD, BP5035, Montpellier 34032, France XX DR MD5; 1b504462d77b5ccd704cfdb9861f6471. DR EuropePMC; PMC2777162; 19903330. XX FH Key Location/Qualifiers FH FT source 1..2735 FT /organism="Sugarcane streak Reunion virus" FT /strain="1" FT /mol_type="genomic DNA" FT /db_xref="taxon:78395" FT misc_feature join(2591..2735,1..138) FT /note="large intergenic region" FT CDS 139..468 FT /codon_start=1 FT /gene="V1" FT /product="putative movement protein V1" FT /db_xref="GOA:Q9QSV4" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:Q9QSV4" FT /protein_id="AAD49107.1" FT /translation="MDSLEGASPALPAVALPRVPRAAPSAPALPWSRVGEIAIFTFVAV FT LALYLLWVWVLRDLVFVLKARRGGSTEELHFGPRERESVASADSSRPVAAPSAPPVSDA FT RPFSV" FT CDS 480..1223 FT /codon_start=1 FT /gene="V2" FT /product="coat protein" FT /db_xref="GOA:Q9QSV3" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:Q9QSV3" FT /protein_id="AAD49108.1" FT /translation="MPTTAGKRKRTDDAAWSKRARPKAGRTSAARPGTAVRRVRPALQI FT QTLQAAGTSMITVPSGGVCDILGSYSRGSDECNRHTNETVTYKVALDYHFVASAAACKY FT SSIGTGVVWLVYDAQPQGNCPTVKDIFPHPDTLSAFPYTWKVGREVCHRFVVKRRWTFT FT MEVNGRIGSDMPPATAVWPPCRKNIYFHKFVTGLGVKTEWKNTTGGEVGDIKKGALYIV FT IAPGNGLDFTVHGNARLYFKSVGNQ" FT CDS complement(1413..>1847) FT /codon_start=1 FT /gene="C2" FT /product="RepB" FT /note="no initial methionine codon; fused with the RepA FT protein by splicing of an intron" FT /db_xref="UniProtKB/TrEMBL:Q9QSV2" FT /protein_id="AAD49110.1" FT /translation="NNTGTRKLSLYILGPTRTGKSTWARSLGRHNYWQNNVDWSCYDED FT AVYNVIDDIPFKFCPCWKQLIGCQENYVVNPKYGKKRRVAKKSISTIVLANEDEDWMKV FT MSPGQLDYFHQNCVVYIMEEGERFFGGPAVSATAHPPIGV" FT CDS complement(1652..2590) FT /codon_start=1 FT /gene="C1" FT /product="RepA" FT /note="replication-associated protein" FT /db_xref="GOA:Q9QSV1" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q9QSV1" FT /protein_id="AAD49109.1" FT /translation="MPSQEDSTVASRPFKHRNANTFLTYSRCRLDPEAVGLILWQLISH FT WSPAYILVSREAHADGEWHLHALVQSVRPVQTTNQGFFDIESFHPNIQSAKSANKVREY FT ILKNPIAKWEKGTFIPRKQCFVSSSSESKNSKPSKDDIVRDIIEHSTSKEEYLSMLQKA FT LPYDWATKLQYFEYSASKLFPDTVEEYTSPHPTTTPLLRDPTTIDNWVQPNLFQVSPEA FT YMLCNPHCLSLEEASSDLEWMSSTSRTIQVQESLASTSSAQQELENLLGPVAWEDIITG FT KTTSTGPATTRTQSTTSLTTSPSSSVLAGSN" XX SQ Sequence 2735 BP; 600 A; 665 C; 756 G; 714 T; 0 other; accgcgcttt ctcatgcgag cccgttaggg cgagcggtcc cctaggcttt aggagagctt 60 gtttttctca gtcggccccg atattaaagg gccgcgtatg aatcgcacta taagtagagc 120 cctaggtgcg atctctgcat ggatagcctt gaaggagcgt cccctgcttt gcccgcagta 180 gctttgcctc gtgtcccccg ggcagctccg tccgctcctg cgttgccgtg gagccgcgtt 240 ggtgaaatag ctatctttac ctttgttgca gtgctagcgc tttacttact ttgggtttgg 300 gtgctgagag atcttgtctt cgttttgaag gctcgacgag gcggatctac ggaggagctg 360 cattttgggc ccagggagcg ggagtctgtc gcttctgccg acagttctcg tccagtcgct 420 gctccgtcgg cccctcctgt aagtgacgct aggcctttct cggtctagct gccgtgagca 480 tgcctactac cgccgggaaa cggaagagga cagatgatgc cgcttggagt aagagagctc 540 gaccgaaggc cgggcgtaca tctgccgccc ggcctggtac tgccgttcgt cgggtccgtc 600 cagctctgca gatccagacg ctccaggcgg ctggcacgtc aatgatcacc gttccgtcgg 660 gtggtgtttg tgatatcctc gggtcctatt cacgaggctc tgacgagtgc aatcgccaca 720 ccaacgagac tgtcacctac aaggtagctc tggactacca tttcgttgct agtgcagcag 780 cctgcaagta ttccagtatt ggcactggcg tggtgtggtt ggtgtacgac gcacagcctc 840 agggaaattg tcctacggtg aaagacatct tcccgcatcc tgacactttg agcgccttcc 900 cgtatacctg gaaggtcggc cgagaggtgt gccatcggtt cgtggtgaag cggcggtgga 960 ctttcacgat ggaagtcaat ggacggattg gatctgatat gcctcctgcg actgccgtgt 1020 ggcccccgtg ccggaagaac atatacttcc acaagtttgt caccggactc ggcgtaaaaa 1080 cggagtggaa gaatacaacc ggcggtgaag tcggagacat taagaagggt gccctctata 1140 ttgtaattgc cccaggcaat ggactcgatt ttacggtgca tggaaatgcc cgtttgtact 1200 ttaagagcgt tggtaatcag tgattgccag ccaatgtaat aaaaacatta ttattatgat 1260 tatcacgccg caggcgttac attacatagt ccgcagatag gcggacagga agcaaacaca 1320 tacaatactc ggcggccaga tcgtggcggc taagggatag cgcaggaaaa aaacacacaa 1380 aaaaaactga cattattgaa attggtcggc gctcagaccc cgataggggg atgggctgta 1440 gctgacaccg cgggcccgcc gaagaagcgc tcgccttctt ccattatgta gacgacgcag 1500 ttctgatgaa agtagtccag ctgccctgga ctcattacct tcatccagtc ttcatcctcg 1560 ttggcaagaa caattgtgga gatgcttttc ttggctactc tccgtttctt cccatacttg 1620 ggattaacga cgtagttctc ttggcaacca atcagttgct tccagcaagg acagaacttg 1680 aaggggatgt cgtcaatgac gttgtagact gcgtcctcgt cgtagcagga ccagtcgacg 1740 ttgttttgcc agtaattatg tcttcccagg ctacgggccc aagtagattt tccagttctt 1800 gttgggccga ggatgtagag gctaagcttt cttgtacctg tattgttctg gatgtagaag 1860 acatccattc taggtcagag gatgcctctt ccaggcttaa gcaatgtggg ttacagagca 1920 tgtatgcttc aggactaacc tgaaacaggt tgggttgcac ccagttgtca atggtggttg 1980 ggtccctcag aagtggcgtg gtagtaggat gaggactggt gtactcttcc acagtatctg 2040 ggaatagctt agaagctgag tattcaaagt attgcagttt cgtagcccag tcgtatggta 2100 atgccttctg aagcatggaa aggtactctt ccttagaggt ggagtgctcg atgatatctc 2160 taacgatatc atccttggag ggtttggaat tcttgctctc agaggaagag gatacaaagc 2220 attgtttgcg tggaataaat gtacctttct cccatttagc gattggattt ttcagtatgt 2280 attccctgac tttgttggca ctctttgcac tctgaatgtt agggtggaaa ctctcaatgt 2340 cgaagaaccc ttggttcgtc gtttgtacag gcctgacgct ctggactaag gcatggaggt 2400 gccattctcc atctgcgtgt gcttccctgc tcactagaat gtacgccgga ctccagtgac 2460 taatgagctg ccatagtatc agacccactg cctctgggtc cagtctgcag cgagagtaag 2520 tgaggaaggt gttggcattc ctatgcttga atggcctgga ggctacggtg gagtcctcct 2580 gtgaaggcat ggagtctgat ttgggagctc tccaactcta ctacaacagg ttttgcgaat 2640 cgaaatccga cctccctcgg ctttatagcc gacgtaagtg ggctgggccc aaagtttttt 2700 gggccgcaat gagaaagcgc aaaaccaata atatt 2735 //