Dbfetch

Dbfetch

ID   AF071879; SV 1; circular; genomic DNA; STD; VRL; 1758 BP.
XX
AC   AF071879;
XX
DT   09-SEP-1998 (Rel. 56, Created)
DT   27-MAR-2009 (Rel. 100, Last updated, Version 3)
XX
DE   Porcine circovirus 1, complete genome.
XX
KW   .
XX
OS   Porcine circovirus 1
OC   Viruses; Circoviridae; Circovirus.
XX
RN   [1]
RP   1-1758
RX   DOI; 10.1007/s007050050412.
RX   PUBMED; 9787657.
RA   Niagro F.D., Forsthoefel A.N., Lawther R.P., Kamalanathan L., Ritchie B.W.,
RA   Latimer K.S., Lukert P.D.;
RT   "Beak and feather disease virus and porcine circovirus genomes:
RT   intermediates between the geminiviruses and plant circoviruses";
RL   Arch. Virol. 143(9):1723-1744(1998).
XX
RN   [2]
RP   1-1758
RA   Niagro F.D., Forsthoefel A.N., Lawther R.P., Kamalanathan L., Ritchie B.W.,
RA   Latimer K.S., Lukert P.D.;
RT   ;
RL   Submitted (12-JUN-1998) to the INSDC.
RL   Clinical Investigation, Dwight D. Eisenhower Army Medical Center, Bldg.
RL   332, Fort Gordon, GA 30905-5650, USA
XX
DR   MD5; 07591a6943825e316b6ac4e6e2756d48.
DR   EuropePMC; PMC227037; 12760475.
DR   EuropePMC; PMC5951868; 29564688.
DR   EuropePMC; PMC86951; 10878032.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1758
FT                   /organism="Porcine circovirus 1"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:133704"
FT   stem_loop       join(1747..1758,1..21)
FT   gene            55..993
FT                   /gene="V1"
FT   CDS             55..993
FT                   /codon_start=1
FT                   /gene="V1"
FT                   /product="replication-associated protein"
FT                   /note="rolling-circle replication protein homolog; Rep
FT                   protein"
FT                   /db_xref="GOA:Q805H4"
FT                   /db_xref="InterPro:IPR000605"
FT                   /db_xref="InterPro:IPR003365"
FT                   /db_xref="InterPro:IPR027417"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q805H4"
FT                   /protein_id="AAC34819.1"
FT                   /translation="MPSKKSGPQPHKRWVFTLNNPSEEEKNKIRELPISLFDYFVCGEE
FT                   GLEEGRTPHLQGFANFAKKQTFNKVKWYFGARCHIEKAKGTDQQNKEYCSKEGHILIEC
FT                   GAPRNQGKRSDLSTAVSTLLETGSLVTVAEQFPVTYVRNFRGLAELLKVSGKMQQRDWK
FT                   TAVHVIVGPPGCGKSQWARNFTEPSDTYWKPSRNKWWDGYHGEEVVVLDDFYGWLPWDD
FT                   LLRLCDRYPLTVETKGGTVPFLARSILITSNQAPQEWYSSTAVPAVEALYRRITTLQFW
FT                   KTAGEQSTEVPEGRFEAVDPPCALFPYKINY"
FT   gene            complement(1038..1730)
FT                   /gene="C1"
FT   CDS             complement(1038..1730)
FT                   /codon_start=1
FT                   /gene="C1"
FT                   /product="capsid protein"
FT                   /db_xref="GOA:Q80QL5"
FT                   /db_xref="InterPro:IPR003383"
FT                   /db_xref="InterPro:IPR038652"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q80QL5"
FT                   /protein_id="AAC34820.1"
FT                   /translation="MTWPRRRYRRRRTRPRSHLGNILRRRPYLAHPAFRNRYRWRRKTG
FT                   IFNSRLSTELVLTIKGGYSQPSWNVNYLKFNIGQFLPPSGGTNPLPLPFQYYRIRKAKY
FT                   EFYPRDPITSNQRGVGSTVVILDANFVTPSTNLAYDPYINYSSRHTIRQPFTYHSRYFT
FT                   PKPELDQTIDWFHPNNKRNQLWLHLNTHTNVEHTGLGYALQNAATAQNYVVRLTIYVQF
FT                   REFILKDL"
XX
SQ   Sequence 1758 BP; 432 A; 344 C; 506 G; 476 T; 0 other;
     gtagtattac cagcgcactt cggcagcggc agcacctcgg cagcgtcagt gaaaatgcca        60
     agcaagaaaa gcggcccgca accccataag aggtgggtgt tcacccttaa taatccttcc       120
     gaggaggaga aaaacaaaat acgggagctt ccaatctccc tttttgatta ttttgtttgc       180
     ggagaggaag gtttggaaga gggtagaact cctcacctcc aggggtttgc gaattttgct       240
     aagaagcaga cttttaacaa ggtgaagtgg tattttggtg cccgctgcca catcgagaaa       300
     gcgaaaggaa ccgaccagca gaataaagaa tactgcagta aagaaggtca catacttatc       360
     gagtgtggag ctccgcggaa ccaggggaag cgcagcgacc tgtctactgc tgtgagtacc       420
     cttttggaga cggggtcttt ggtgactgta gccgagcagt tccctgtaac gtatgtgaga       480
     aatttccgcg ggctggctga acttttgaaa gtgagcggga agatgcagca gcgtgattgg       540
     aagacagctg tacacgtcat agtgggcccg cccggttgtg ggaagagcca gtgggcccgt       600
     aattttactg agcctagcga cacctactgg aagcctagta gaaataagtg gtgggatgga       660
     tatcatggag aagaagttgt tgttttggat gatttttatg gctggttacc ttgggatgat       720
     ctactgagac tgtgtgaccg gtatccattg actgtagaga ctaaaggcgg tactgttcct       780
     tttttggccc gcagtatttt gattaccagc aatcaggccc cccaggaatg gtactcctca       840
     actgctgtcc cagctgtaga agctctctat cggaggatta ctactttgca attttggaag       900
     actgctggag aacaatccac ggaggtaccc gaaggccgat ttgaagcagt ggacccaccc       960
     tgtgcccttt tcccatataa aataaattac tgagtctttt ttgttatcac atcgtaatgg      1020
     tttttatttt tatttattta gaggtctttt aggataaatt ctctgaattg tacataaata      1080
     gtcagcctta ccacataatt ttgggctgtg gctgcatttt ggagcgcata gccgaggcct      1140
     gtgtgctcga cattggtgtg ggtatttaaa tggagccaca gctggtttct tttattattt      1200
     gggtggaacc aatcaattgt ttggtccagc tcaggtttgg gggtgaagta cctggagtgg      1260
     taggtaaagg gctgccttat ggtgtggcgg gaggagtagt taatataggg gtcataggcc      1320
     aagttggtgg agggggttac aaagttggca tccaagataa caacagtgga cccaacacct      1380
     ctttgattag aggtgatggg gtctctgggg taaaattcat atttagcctt tctaatacgg      1440
     tagtattgga aaggtagggg tagggggttg gtgccgcctg agggggggag gaactggccg      1500
     atgttgaatt tgaggtagtt aacattccaa gatggctgcg agtatcctcc ttttatggtg      1560
     agtaccaatt ctgtagaaag gcgggaattg aagatacccg tctttcggcg ccatctgtaa      1620
     cggtttctga aggcggggtg tgccaaatat ggtcttctcc ggaggatgtt tccaagatgg      1680
     ctgcgggggc gggtccttct tctgcggtaa cgcctccttg gccacgtcat cctataaaag      1740
     tgaaagaagt gcgctgct                                                    1758
//