ID   AF071878; SV 1; circular; genomic DNA; STD; VRL; 1993 BP.
XX
AC   AF071878;
XX
DT   09-SEP-1998 (Rel. 56, Created)
DT   03-MAR-2000 (Rel. 62, Last updated, Version 2)
XX
DE   Beak and feather disease virus, complete genome.
XX
KW   .
XX
OS   Beak and feather disease virus
OC   Viruses; Circoviridae; Circovirus.
XX
RN   [1]
RP   1-1993
RX   DOI; 10.1007/s007050050412.
RX   PUBMED; 9787657.
RA   Niagro F.D., Forsthoefel A.N., Lawther R.P., Kamalanathan L., Ritchie B.W.,
RA   Latimer K.S., Lukert P.D.;
RT   "Beak and feather disease virus and porcine circovirus genomes:
RT   intermediates between the geminiviruses and plant circoviruses";
RL   Arch. Virol. 143(9):1723-1744(1998).
XX
RN   [2]
RP   1-1993
RA   Niagro F.D., Forsthoefel A.N., Lawther R.P., Kamalanathan L., Ritchie B.W.,
RA   Latimer K.S., Lukert P.D.;
RT   ;
RL   Submitted (12-JUN-1998) to the INSDC.
RL   Clinical Investigation, Dwight D. Eisenhower Army Medical Center, Bldg.
RL   332, Fort Gordon, GA 30905-5650, USA
XX
DR   MD5; 6c170a8c500f2a10bf205c1bc5ece847.
DR   EuropePMC; PMC2812408; 20007276.
DR   EuropePMC; PMC3133700; 21177928.
DR   EuropePMC; PMC3647419; 23628223.
DR   EuropePMC; PMC506959; 15308722.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1993
FT                   /organism="Beak and feather disease virus"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:77856"
FT   stem_loop       join(1975..1993,1..19)
FT   CDS             <108..1007
FT                   /codon_start=1
FT                   /gene="V1"
FT                   /product="replication-associated protein"
FT                   /note="rolling-circle replication protein homolog; Rep
FT                   protein; TCT (serine) codon appears to be the translation
FT                   initiation codon"
FT                   /db_xref="GOA:O90235"
FT                   /db_xref="InterPro:IPR000605"
FT                   /db_xref="InterPro:IPR003365"
FT                   /db_xref="InterPro:IPR027417"
FT                   /db_xref="UniProtKB/TrEMBL:O90235"
FT                   /protein_id="AAC34816.1"
FT                   /translation="SPEDHTRPGTIPSKEGSGCRRWCFTLNNPTDGEIEFVRSLGPDEF
FT                   YYAIVGREKGEQGTPHLQGYFHFKNKKRLSALKKMLPRGHFERAKGSDADNEKYCSKEG
FT                   DVILTLGIVARDGHRAFDGAVAAVMSGPKMKEVAREFPDIYVRHGRGLHSLSLLVGSRP
FT                   RDFKTEVDVIYGPPGCGKSRWANEQPGTKYYKMRGEWWDGYDGEDVVILDDFYGWLPYC
FT                   EMLRLCDRYPHKVPVKGAFVEFTSKRIIITSNKAPETWYKEDCDPKPLFRRFTRVWWYN
FT                   IDKLEQVRPDFLAHPINF"
FT   CDS             550..1026
FT                   /codon_start=1
FT                   /gene="V2"
FT                   /product="unknown"
FT                   /db_xref="InterPro:IPR007772"
FT                   /db_xref="UniProtKB/TrEMBL:O90236"
FT                   /protein_id="AAC34817.1"
FT                   /translation="MGGACIASRYWLVPARVILRLRLTSFTGHRGVARVDGPMSSLGPN
FT                   IIKCAVNGGMDMMGKMSSSWTTFMGGYLIARCSASATVTHIKCQLRALLWSLRARGSLS
FT                   RAIRPRRPGTRRTVTRSHCSGDSLVFGGTTLTSWNKSGLISSPTPSIFDSLGDV"
FT   CDS             complement(1240..>1974)
FT                   /codon_start=1
FT                   /gene="C1"
FT                   /product="capsid protein"
FT                   /note="TCT (serine) codon appears to be the translation
FT                   initiation codon"
FT                   /db_xref="GOA:O90237"
FT                   /db_xref="InterPro:IPR003383"
FT                   /db_xref="InterPro:IPR038652"
FT                   /db_xref="UniProtKB/TrEMBL:O90237"
FT                   /protein_id="AAC34818.1"
FT                   /translation="SNYACAIFQVRRRYARPYYRRRHIRRYRRRRRHFRRRRFSTNRVY
FT                   TLRLTRQFKFQIQKQTTSTGNLIFSSDFVTFALSDFITNTPNPQTLNFENYRIKLAKME
FT                   MRPTWGHYTIQGDGFGHTAVIQDSRISKFKTVADQTQDPLAPFDGARKWYVSRGFKRLL
FT                   RPKPQITINDLTTANQSAALWLNSARTGWIPLQGGPNAAGAKVRHYGIGFSFPQPEQTI
FT                   TYVTKLTIYVQFRQFAPNNPST"
XX
SQ   Sequence 1993 BP; 426 A; 455 C; 603 G; 509 T; 0 other;
     ttagtattac ccgccgcctg gggcaccggg gcaccgcagc tattggctgc cttgcggagg        60
     tgcccgcccc tagggaggag taaatggcgc cgttaggcgc ccgttaatct ccggaggatc       120
     acactcgtcc gggaaccatc ccgtccaagg agggctctgg ctgtcgccgt tggtgtttca       180
     ctcttaacaa ccctacagac ggcgaaatcg aattcgtccg ttctctcggg cctgacgaat       240
     tctactatgc catcgttgga cgggaaaagg gtgagcaagg cactccccat ttgcaaggct       300
     actttcattt taaaaataag aagcgactga gcgcgcttaa gaaaatgctg ccgcgaggtc       360
     attttgagcg cgctaaaggg agcgacgcgg ataacgagaa gtattgcagt aaagaggggg       420
     acgtcatact taccctgggc attgtggcga gagacggtca ccgcgctttc gatggagctg       480
     ttgctgccgt gatgtccgga cccaaaatga aggaagtcgc gcgagagttc ccagatatct       540
     acgtcaggca tgggcggggc ttgcatagcc tctcgctatt ggttggttcc cgcccgcgtg       600
     attttaagac tgaggttgac gtcatttacg ggccaccggg gtgtggcaag agtcgatggg       660
     ccaatgagca gcctgggacc aaatattata aaatgcgcgg tgaatggtgg gatggatatg       720
     atggggaaga tgtcgtcatc ttggacgact tttatgggtg gctaccttat tgcgagatgc       780
     tccgcctctg cgaccgttac ccacataaag tgccagttaa gggcgctttt gtggagttta       840
     cgagcaagag gatcattatc acgagcaata aggccccgga gacctggtac aaggaggact       900
     gtgacccgaa gccactgttc cggagattca ctcgtgtttg gtggtacaac attgacaagt       960
     tggaacaagt ccggcctgat ttcctcgccc accccatcaa tttttgatag tctcggtgat      1020
     gtttaataaa gttaggcgtc gggccgaagg cccgatgccg caggggggga ccccctgccg      1080
     gagggttcgc agggccgtca ggcccgagaa cccgaccagc ccggagggcc tagtctgtat      1140
     cggggggggg gccccggggg gtccccccga cacgacgaac acggtagcga cgaaggcgcc      1200
     aataaacact caaaaaggta tttgctgctt gagtctttat taagtactgg gattgttagg      1260
     ggcaaactga cggaattgaa catatatagt gagcttggtt acataagtga tcgtttgttc      1320
     tggctgaggg aagctgaagc caatgccgta gtgcctgact ttcgctcctg ctgcgttggg      1380
     tcctccttgt agtgggatcc agccggttct ggcgctgttt agccacaatg ctgcagactg      1440
     gttcgctgtg gtgaggtcgt ttatcgttat ttgtggtttt ggtctgagga gacgtttgaa      1500
     tcccctgcta acataccatt ttctggcacc gtcgaaaggt gccagtgggt cttgtgtttg      1560
     gtctgcaaca gttttaaatt tacttatcct ggagtcttgg attacggccg tgtggccgaa      1620
     tccgtctcct tgtatggtgt agtgtcccca tgtgggcctc atttccattt tagctaactt      1680
     aatccggtag ttttcgaaat tcagtgtttg tgggtttggt gtgtttgtta tgaagtctga      1740
     caatgcaaag gttacaaagt cggagctaaa aattaggttg ccagtactgg tggtttgttt      1800
     ttgaatttgg aatttgaatt ggcgtgtgag tctgagagtg taaaccctat tggttgagaa      1860
     acggcgtctg cggaagtgtc tacgtcgccg gcggtatcgc ctgatgtgac gtctgcggta      1920
     gtatgggcgg gcataccgtc gtctaacctg aaatatagcg catgcgtagt tagaggtgcc      1980
     ccataggcgg cgg                                                         1993
//