Dbfetch
ID AF071878; SV 1; circular; genomic DNA; STD; VRL; 1993 BP. XX AC AF071878; XX DT 09-SEP-1998 (Rel. 56, Created) DT 03-MAR-2000 (Rel. 62, Last updated, Version 2) XX DE Beak and feather disease virus, complete genome. XX KW . XX OS Beak and feather disease virus OC Viruses; Circoviridae; Circovirus. XX RN [1] RP 1-1993 RX DOI; 10.1007/s007050050412. RX PUBMED; 9787657. RA Niagro F.D., Forsthoefel A.N., Lawther R.P., Kamalanathan L., Ritchie B.W., RA Latimer K.S., Lukert P.D.; RT "Beak and feather disease virus and porcine circovirus genomes: RT intermediates between the geminiviruses and plant circoviruses"; RL Arch. Virol. 143(9):1723-1744(1998). XX RN [2] RP 1-1993 RA Niagro F.D., Forsthoefel A.N., Lawther R.P., Kamalanathan L., Ritchie B.W., RA Latimer K.S., Lukert P.D.; RT ; RL Submitted (12-JUN-1998) to the INSDC. RL Clinical Investigation, Dwight D. Eisenhower Army Medical Center, Bldg. RL 332, Fort Gordon, GA 30905-5650, USA XX DR MD5; 6c170a8c500f2a10bf205c1bc5ece847. DR EuropePMC; PMC2812408; 20007276. DR EuropePMC; PMC3133700; 21177928. DR EuropePMC; PMC3647419; 23628223. DR EuropePMC; PMC506959; 15308722. XX FH Key Location/Qualifiers FH FT source 1..1993 FT /organism="Beak and feather disease virus" FT /mol_type="genomic DNA" FT /db_xref="taxon:77856" FT stem_loop join(1975..1993,1..19) FT CDS <108..1007 FT /codon_start=1 FT /gene="V1" FT /product="replication-associated protein" FT /note="rolling-circle replication protein homolog; Rep FT protein; TCT (serine) codon appears to be the translation FT initiation codon" FT /db_xref="GOA:O90235" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR003365" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:O90235" FT /protein_id="AAC34816.1" FT /translation="SPEDHTRPGTIPSKEGSGCRRWCFTLNNPTDGEIEFVRSLGPDEF FT YYAIVGREKGEQGTPHLQGYFHFKNKKRLSALKKMLPRGHFERAKGSDADNEKYCSKEG FT DVILTLGIVARDGHRAFDGAVAAVMSGPKMKEVAREFPDIYVRHGRGLHSLSLLVGSRP FT RDFKTEVDVIYGPPGCGKSRWANEQPGTKYYKMRGEWWDGYDGEDVVILDDFYGWLPYC FT EMLRLCDRYPHKVPVKGAFVEFTSKRIIITSNKAPETWYKEDCDPKPLFRRFTRVWWYN FT IDKLEQVRPDFLAHPINF" FT CDS 550..1026 FT /codon_start=1 FT /gene="V2" FT /product="unknown" FT /db_xref="InterPro:IPR007772" FT /db_xref="UniProtKB/TrEMBL:O90236" FT /protein_id="AAC34817.1" FT /translation="MGGACIASRYWLVPARVILRLRLTSFTGHRGVARVDGPMSSLGPN FT IIKCAVNGGMDMMGKMSSSWTTFMGGYLIARCSASATVTHIKCQLRALLWSLRARGSLS FT RAIRPRRPGTRRTVTRSHCSGDSLVFGGTTLTSWNKSGLISSPTPSIFDSLGDV" FT CDS complement(1240..>1974) FT /codon_start=1 FT /gene="C1" FT /product="capsid protein" FT /note="TCT (serine) codon appears to be the translation FT initiation codon" FT /db_xref="GOA:O90237" FT /db_xref="InterPro:IPR003383" FT /db_xref="InterPro:IPR038652" FT /db_xref="UniProtKB/TrEMBL:O90237" FT /protein_id="AAC34818.1" FT /translation="SNYACAIFQVRRRYARPYYRRRHIRRYRRRRRHFRRRRFSTNRVY FT TLRLTRQFKFQIQKQTTSTGNLIFSSDFVTFALSDFITNTPNPQTLNFENYRIKLAKME FT MRPTWGHYTIQGDGFGHTAVIQDSRISKFKTVADQTQDPLAPFDGARKWYVSRGFKRLL FT RPKPQITINDLTTANQSAALWLNSARTGWIPLQGGPNAAGAKVRHYGIGFSFPQPEQTI FT TYVTKLTIYVQFRQFAPNNPST" XX SQ Sequence 1993 BP; 426 A; 455 C; 603 G; 509 T; 0 other; ttagtattac ccgccgcctg gggcaccggg gcaccgcagc tattggctgc cttgcggagg 60 tgcccgcccc tagggaggag taaatggcgc cgttaggcgc ccgttaatct ccggaggatc 120 acactcgtcc gggaaccatc ccgtccaagg agggctctgg ctgtcgccgt tggtgtttca 180 ctcttaacaa ccctacagac ggcgaaatcg aattcgtccg ttctctcggg cctgacgaat 240 tctactatgc catcgttgga cgggaaaagg gtgagcaagg cactccccat ttgcaaggct 300 actttcattt taaaaataag aagcgactga gcgcgcttaa gaaaatgctg ccgcgaggtc 360 attttgagcg cgctaaaggg agcgacgcgg ataacgagaa gtattgcagt aaagaggggg 420 acgtcatact taccctgggc attgtggcga gagacggtca ccgcgctttc gatggagctg 480 ttgctgccgt gatgtccgga cccaaaatga aggaagtcgc gcgagagttc ccagatatct 540 acgtcaggca tgggcggggc ttgcatagcc tctcgctatt ggttggttcc cgcccgcgtg 600 attttaagac tgaggttgac gtcatttacg ggccaccggg gtgtggcaag agtcgatggg 660 ccaatgagca gcctgggacc aaatattata aaatgcgcgg tgaatggtgg gatggatatg 720 atggggaaga tgtcgtcatc ttggacgact tttatgggtg gctaccttat tgcgagatgc 780 tccgcctctg cgaccgttac ccacataaag tgccagttaa gggcgctttt gtggagttta 840 cgagcaagag gatcattatc acgagcaata aggccccgga gacctggtac aaggaggact 900 gtgacccgaa gccactgttc cggagattca ctcgtgtttg gtggtacaac attgacaagt 960 tggaacaagt ccggcctgat ttcctcgccc accccatcaa tttttgatag tctcggtgat 1020 gtttaataaa gttaggcgtc gggccgaagg cccgatgccg caggggggga ccccctgccg 1080 gagggttcgc agggccgtca ggcccgagaa cccgaccagc ccggagggcc tagtctgtat 1140 cggggggggg gccccggggg gtccccccga cacgacgaac acggtagcga cgaaggcgcc 1200 aataaacact caaaaaggta tttgctgctt gagtctttat taagtactgg gattgttagg 1260 ggcaaactga cggaattgaa catatatagt gagcttggtt acataagtga tcgtttgttc 1320 tggctgaggg aagctgaagc caatgccgta gtgcctgact ttcgctcctg ctgcgttggg 1380 tcctccttgt agtgggatcc agccggttct ggcgctgttt agccacaatg ctgcagactg 1440 gttcgctgtg gtgaggtcgt ttatcgttat ttgtggtttt ggtctgagga gacgtttgaa 1500 tcccctgcta acataccatt ttctggcacc gtcgaaaggt gccagtgggt cttgtgtttg 1560 gtctgcaaca gttttaaatt tacttatcct ggagtcttgg attacggccg tgtggccgaa 1620 tccgtctcct tgtatggtgt agtgtcccca tgtgggcctc atttccattt tagctaactt 1680 aatccggtag ttttcgaaat tcagtgtttg tgggtttggt gtgtttgtta tgaagtctga 1740 caatgcaaag gttacaaagt cggagctaaa aattaggttg ccagtactgg tggtttgttt 1800 ttgaatttgg aatttgaatt ggcgtgtgag tctgagagtg taaaccctat tggttgagaa 1860 acggcgtctg cggaagtgtc tacgtcgccg gcggtatcgc ctgatgtgac gtctgcggta 1920 gtatgggcgg gcataccgtc gtctaacctg aaatatagcg catgcgtagt tagaggtgcc 1980 ccataggcgg cgg 1993 //