Dbfetch
ID AF071228; SV 1; circular; genomic DNA; STD; VRL; 2791 BP. XX AC AF071228; XX DT 04-JAN-1999 (Rel. 58, Created) DT 06-APR-2004 (Rel. 79, Last updated, Version 5) XX DE Tomato yellow leaf curl virus-Mild[Spain7297], complete genome. XX KW . XX OS Tomato yellow leaf curl virus - Mild[Spain7297] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2791 RX PUBMED; 11038394. RA Navas-Castillo J., Sanchez-Campos S., Noris E., Louro D., Accotto G.P., RA Moriones E.; RT "Natural recombination between Tomato yellow leaf curl virus-is and Tomato RT leaf curl virus"; RL J. Gen. Virol. 81(Pt 11):2797-2801(2000). XX RN [2] RP 1-2791 RA Sanchez-Campos S., Navas-Castillo J., Moriones E.; RT ; RL Submitted (10-JUN-1998) to the INSDC. RL Estacion Experimental 'La Mayora', CSIC, Algarrobo-Costa, Malaga 29750, RL Spain XX DR MD5; c17625e77c029a1796a3f8dacb9f9a07. DR EuropePMC; PMC1440397; 16537630. DR EuropePMC; PMC2224568; 17977971. DR EuropePMC; PMC2887567; 19759238. DR EuropePMC; PMC3485178; 23082767. DR EuropePMC; PMC4442973; 26028987. DR EuropePMC; PMC4967916; 27476582. DR EuropePMC; PMC516410; 15367638. DR EuropePMC; PMC6036239; 30013589. DR EuropePMC; PMC6164481; 30177671. DR EuropePMC; PMC6356960; 30634476. DR EuropePMC; PMC6362282; 30718735. XX FH Key Location/Qualifiers FH FT source 1..2791 FT /organism="Tomato yellow leaf curl virus - Mild[Spain7297]" FT /isolate="Spain Sp7297" FT /mol_type="genomic DNA" FT /country="Spain" FT /note="whitefly transmitted; infectious clone" FT /db_xref="taxon:270155" FT gene 155..505 FT /gene="V1" FT CDS 155..505 FT /codon_start=1 FT /gene="V1" FT /product="pre-coat protein" FT /db_xref="GOA:Q9WLG6" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q9WLG6" FT /protein_id="AAC99357.1" FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLIRDL FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV FT PEAQNIQNVSKH" FT gene 315..1091 FT /gene="V2" FT CDS 315..1091 FT /codon_start=1 FT /gene="V2" FT /product="coat protein" FT /db_xref="GOA:Q9YUY0" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q9YUY0" FT /protein_id="AAC99358.1" FT /translation="MSKRPGDIIISTPASKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW FT TYRPMYRKPRIYRMYRSTDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGNSPMDFGQVFNMFDN FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFRINSHVTYNHQEAAKYE FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN" FT gene complement(1088..1492) FT /gene="C3" FT CDS complement(1088..1492) FT /codon_start=1 FT /gene="C3" FT /product="C3 protein" FT /db_xref="GOA:Q9YUX9" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q9YUX9" FT /protein_id="AAC99361.1" FT /translation="MDSRTGELITAPQAENGVFIWEINNPLYFKITEHSQRPFLMNHDI FT ISIQIRFNHNIRKVLGIHKCFLNFRIWTTLQPQTGRFLKVFRHQVLKYLDSIGVISINN FT VIRAVDHVLYDVLENTINVTETHDIKYKFY" FT gene complement(1233..1640) FT /gene="C2" FT CDS complement(1233..1640) FT /codon_start=1 FT /gene="C2" FT /product="C2 protein" FT /db_xref="GOA:Q9YUX8" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q9YUX8" FT /protein_id="AAC99360.1" FT /translation="MQPSSPSTSHCSQVSIKVQHKIAKKKPIRRKRIDLDCGCSYYQHL FT NCNNHGFTHRGTHHCSSGREWRFYLGDKQSPLFQDNRTQPEAISNEPRHHFHSDKIQPQ FT HQEGIGDSQMFSQLPNLDDITASDWSFLKSI" FT gene complement(1549..2628) FT /gene="C1" FT CDS complement(1549..2628) FT /codon_start=1 FT /gene="C1" FT /product="replication associated protein" FT /db_xref="GOA:Q77W92" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q77W92" FT /protein_id="AAC99359.1" FT /translation="MAPPKRFQINCKNYFLTYPKCSLTKEEALSQLKNLETPTNKKYIK FT VCRELHENGEPHLHVLIQFEGKFKCQNQRFFDLVSPSRAAHFHPNIQGAKSSSDVKSYV FT DKDGDTVDWGEFQIDGRSARGGQQSANDAYAAALNSGSKSEALRIIKELIPKDYILQFH FT NLNSNLDRIFQEPPAPYISPFLSSSFNQVPDELEVWVSENVVSSAARPWRPNSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNATFVTLYEPL FT FASINQGPTQDSQEETNKA" FT gene complement(2169..2471) FT /gene="C4" FT CDS complement(2169..2471) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q77W91" FT /protein_id="AAC99362.1" FT /translation="MGNHISMCLSNLKGNSSAKISDSSTWYPQAGQHISIQTFRELNPV FT QTSSLMSIRTETPSTGVSFRSTDDLHVGVSSQPMTLTPQLLTQAVSQRLLESLKN" XX SQ Sequence 2791 BP; 762 A; 537 C; 615 G; 877 T; 0 other; taatattacc ggatggccgc gccttttcct tttatgtggt ccccatgagg gttcaacaga 60 cgtcactgtc aaccaatcaa attgcatcct caaacgttag ataagtgttc atttgtcttt 120 atatacttgg tccccaagta gtttgtcttg caatatgtgg gatccacttc taaatgaatt 180 tcctgaatct gttcacggat ttcgttgtat gttagctatt aaatatttgc agtccgttga 240 ggaaacttac gagcccaata cattgggcca cgatttaatt agggatctta tatctgttgt 300 aagggcccgt gactatgtcg aagcgaccag gcgatataat catttccacg cccgcctcga 360 aggttcgccg aaggctgaac ttcgacagcc catacagcag ccgtgctgct gtccccattg 420 tccaaggcac aaacaagcga cgatcatgga cgtacaggcc catgtaccgg aagcccagaa 480 tatacagaat gtatcgaagc actgatgttc cccgtggatg tgaaggccca tgtaaagtac 540 agtcttatga gcaacgggat gatattaagc atactggtat tgttcgttgt gttagtgatg 600 ttactcgtgg atctggaatt actcacagag tgggtaagag gttctgtgtt aaatcgatat 660 attttttagg taaagtctgg atggatgaaa atatcaagaa gcagaaccac actaatcagg 720 tcatgttctt cttggtccgt gatagaaggc cctatggaaa cagcccaatg gattttggac 780 aggtttttaa tatgttcgat aatgagccca gtaccgcaac agtgaagaat gatttgcggg 840 ataggtttca agtgatgagg aaatttcatg ctacagttat tggtgggccc tctggaatga 900 aggaacaggc attagttaag aggtttttta gaattaacag tcatgtaact tataatcatc 960 aggaggcagc caagtacgag aaccatactg aaaacgcctt gttattgtat atggcatgta 1020 cgcatgcctc taatccagtg tatgctacta tgaaaatacg catctatttc tatgattcaa 1080 tatcaaatta ataaaattta tattttatat catgagtttc tgttacattt attgtgtttt 1140 caagtacatc atacaataca tgatcaactg ctctgattac attgttaatt gaaattacac 1200 caatactatc taaatactta agaacttgat gtctaaatac ttttaagaaa cgaccagtct 1260 gaggctgtaa tgtcgtccaa attcggaagt tgagaaaaca tttgtgaatc cccaatacct 1320 tcctgatgtt gtggttgaat cttatctgaa tggaaatgat gtcgtggttc attagaaatg 1380 gcctctggct gtgttctgtt atcttgaaat agaggggatt gtttatctcc cagataaaaa 1440 cgccattctc tgcctgagga gcagtgatga gttcccctgt gcgtgaatcc atgattgttg 1500 cagttgaggt gttggtagta tgagcagcca cagtctaggt ctatacgctt acgccttatt 1560 ggtttcttct tggctatctt gtgttggacc ttgattgata cttgcgaaca gtggctcgta 1620 gagggtgacg aaggttgcat tcttgagagc ccaatttttc aaggatatgt ttttttcttc 1680 gtctagatat tccctatatg aggaggtagg tcctggattg cagaggaaga tagtgggaat 1740 tcccccttta atttgaatgg gcttcccgta ctttgtgttg ctttgccagt ccctctgggc 1800 ccccatgaat tctttgaagt gctttaaata atgcgggtct acgtcatcaa tgacgttgta 1860 ccatgcatca ttactgtaca cctttgggct taggtctaga tgtccacata aataattatg 1920 tgggcctaga gacctggccc acattgtttt gcctgttctg ctatcaccct caatgacaat 1980 actattaggt ctccatggcc gcgcagcgga agacacgacg ttctcggaca cccatacttc 2040 aagttcatct ggaacttgat taaaagatga agataaaaag ggagaaatat aaggagccgg 2100 aggctcctga aaaattctat ctaaattact atttaaatta tgaaattgta aaatataatc 2160 tttcggtatt aattctttaa tgattctaag agcctctgac ttactgcctg agttaagagc 2220 tgcggcgtaa gcgtcattgg ctgactgctg acccccacgt gcagatcgtc cgtcgatctg 2280 aaactcaccc cagtcgacgg tgtctccgtc cttatcgaca taagacttga cgtctgaact 2340 ggatttagct ccctgaatgt ttggatggaa atgtgctgcc ctgcttgggg ataccaggtc 2400 gaagaatcgc tgattttggc acttgaattt cccttcaaat tggataagca catggagatg 2460 tggttcccca ttctcgtgga gttctctgca aactttgatg tattttttat ttgttggggt 2520 ttctaggttt tttaattggg aaagtgcttc ttctttcgtt aaggagcact taggatatgt 2580 gaggaaataa tttttgcaat ttatttggaa gcgcttaggg ggagccatat ggtcaatgag 2640 taccgattga ccaagatttt tacacttatc cctggtgtat cggtactcaa tatataggga 2700 gtaccaaatg gcatattggt aattttgtaa aagtacaatg caattcaaaa ttcaaaattc 2760 aaaaatcaaa tcattaaagc ggccatccgt a 2791 //