ID AF065434; SV 2; linear; genomic DNA; STD; FUN; 5911 BP. XX AC AF065434; AF093417; XX DT 01-JUL-1998 (Rel. 56, Created) DT 14-FEB-2020 (Rel. 143, Last updated, Version 9) XX DE Candida albicans strain SC5314 retrotransposon Tca5 polyprotein (pol) gene, DE complete cds. XX KW . XX OS Candida albicans OC Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; OC Saccharomycetales; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. XX RN [1] RP 1-5911 RX DOI; 10.1101/gr.10.2.174. RX PUBMED; 10673276. RA Goodwin T.J., Poulter R.T.; RT "Multiple LTR-retrotransposon families in the asexual yeast Candida RT albicans"; RL Genome Res. 10(2):174-191(2000). XX RN [2] RP 1-5911 RX DOI; 10.1002/1097-0061(200012)16:16<1509::AID-YEA638>3.3.CO;2-I. RX PUBMED; 11113973. RA Plant E.P., Goodwin T.J., Poulter R.T.; RT "Tca5, a Ty5-like retrotransposon from Candida albicans"; RL Yeast 16(16):1509-1518(2000). XX RN [3] RP 3200-4344 RA Goodwin T.J.D.; RT ; RL Submitted (14-MAY-1998) to the INSDC. RL Department of Biochemistry, University of Otago, Cumberland Street, RL Dunedin, New Zealand XX RN [4] RC Sequence update by submitter RP 1-5911 RA Goodwin T.J.D.; RT ; RL Submitted (29-NOV-1999) to the INSDC. RL Department of Biochemistry, University of Otago, Cumberland Street, RL Dunedin, New Zealand XX DR MD5; e6b054f7d4a49edf3b98baaca01d017e. DR StrainInfo; 498901; 0. XX CC On Nov 29, 1999 this sequence version replaced AF065434.1. XX FH Key Location/Qualifiers FH FT source 1..5911 FT /organism="Candida albicans" FT /strain="SC5314" FT /mol_type="genomic DNA" FT /note="contains ICTV exemplar Candida albicans Tca5 virus" FT /db_xref="taxon:5476" FT mobile_element 269..5856 FT /mobile_element_type="retrotransposon:Tca5" FT repeat_region 269..953 FT /rpt_type=LONG_TERMINAL_REPEAT FT /note="omega" FT gene 682..5115 FT /gene="pol" FT CDS 682..5115 FT /codon_start=1 FT /transl_table=12 FT /gene="pol" FT /product="polyprotein" FT /note="contains gag, protease, integrase, reverse FT transcriptase, and RNase H" FT /db_xref="GOA:O74218" FT /db_xref="InterPro:IPR001584" FT /db_xref="InterPro:IPR012337" FT /db_xref="InterPro:IPR013103" FT /db_xref="InterPro:IPR036397" FT /db_xref="InterPro:IPR039537" FT /db_xref="UniProtKB/TrEMBL:O74218" FT /protein_id="AAC24836.2" FT /translation="MSTMPPTSKRTRKRTRTDDNAEPTIQDPSPPLANVEPTIQETPPS FT VEVSDETNSTEINETNSNTHEETNVLTNVHSSPIETVTERNFNFQQVIASISTVDNQSL FT LKDKISYDHWFSTLKENAIMISPDFLDFINKDTMDLQQYPTVYQTFLDRLICATIDPHI FT KQSLKYRKLSGKKMLSEIISQFGSMTIKDKVNYSIIMATKIHSDVTTHLDKMNLSAQFY FT AFLMRQPQDLKPALLLIAGINDSRFNETYFHDNKELTISKLERYIINQNSKITPSVPTP FT SPRDAVTGLSVTQPTSASGQSEMFNTQCFNCFGLGHTAHRCASPKRLGQINNLRSKLLA FT FETRSKSRKRFPPQPPPTNRSANSTIITNPSPTDDTISSTTEDSFPRDVFGWAASSDQI FT KSNENLSLFFDTGASAHLINNLNLLHDYKPSKENKHVITANGDKIPILGTGTVKLQHGQ FT HKISLRNCQYSPHLHINLISPRLLLDDSTSMTITQSGIYHSKIGQIGYYSTEDGNLIKC FT MFRPITIPHLSLYSQYVEMGLQSNNVLRNIPAFTVHIPQLHDSLGHTSTQQVSNVMKRF FT NVTTDNIGTDCETCRLGKAITQIPKISTHTISSHCLELLHVDVHGPISVPSIFQERYFL FT VILDDYSKYLTVQPLCNKSDATAEIIEFINHWEKFFSGNGNYHTKILRSDNGGEFLNKT FT LTTYLDSKYITHQTSNAYEHHENGAAERAIRSVKDMARVILLQSKLPVPFWSLATRCAA FT FVMNRLPHKTINGKIPYEVWTKQLVNLKMMKPFGSQVYVKIPIGVKSFSAQALSGIMVG FT YATNKKGYLVYDPTQNRIFTSSQIICHPSIYPAANLTFNEPLIISSKVTAAHLHPLTIS FT NLVIPPTNAVSETPLANCVLSSNSSVCPKVCQLQTVLEHGEDKIYASIIPISIGNMKRT FT RTNENKICQLDESNNTTIPDSVILSANNVLLNLESRSSIPKSYKEAITSNEKSKWADAM FT DSEFNSLQSNNTWSLEPLPEGRKAIGIKWVYTIKDTGRYKARLVALGYRQQAGVDFVRN FT YAPVIRGESIKLIFALASKSKLKIHSIDVTTAFLDGEISELIFVTQPPGYEDKKRPNHV FT CKLNRSLYGLKQSPLMWNIKLNDVLIKEGFRRLGGDLGIYISKDKRTIMGVYVDDILIC FT APSDSEIDQVKNNVRKYFSITDNALCRTFLAINVYHQANDIRLSLNDYIRRMIQELKLS FT VSETNPVSIPSDVNYEIFRVNENDDEKPCDQTKYRSLIGKLLFASNTIRFDIAYSVNSL FT SRFINDPKEKHWIAAVKVVKYLSGTQRYGICSYGNGDFNIYADSDWASTPSDRQSITGY FT IVTYAGAPISWRSKKQNVIALSTTEAEFMALTESIKEALWLIYIFRDINVILKLPIVIY FT EDNLSCQKLLENPRFHNRTKHIDLKYKFTKDHIEAGTIKVESTNSADNLADMLTKPLPK FT IKFKHLRWLAGLRPLD" FT repeat_region 5172..5856 FT /rpt_type=LONG_TERMINAL_REPEAT FT /note="omega" XX SQ Sequence 5911 BP; 2027 A; 1166 C; 1020 G; 1698 T; 0 other; ttaatgaatg ctgcttcggg atctctctta agaccttcaa ctctgggtcc tttgtgtaga 60 taaatcgatc tagtaaatat tgtgaattgt tggccagtta ttctactgga taattgtcgt 120 atgttaccaa tcatcacttg tttaaattaa aagtgataat gttatatgtt gtcggttcta 180 tttgatggtt taaactgtcc ccaaaaaaaa aatttttttt cttactcttt ggtttactga 240 gagagaacaa atgaatttga ggaataattg ttggaaaaat gaaatatgat caatcctgca 300 tctagaacct gtggcagaat gaaacctacg agattatgaa tgacttgtga atacaagttg 360 aatgttacag aatgttacca agaaggttac acttgaatat atgaatgact agaaagtgaa 420 ttgaatgtta cagaacctga ataacaatgt tacacgaatg tgtgaatgat atgagtttat 480 ctatagtaat gtgacatata cacaaaggtg tgaatgaccg agaaaacaga tgttacatta 540 cgggcactgg agagtgcaag tctaaagaat cttggagtag aaataagtaa tataaaaagg 600 accaaagatt ctttagagaa aagtaaatga aactatatta gattttatat aactaactaa 660 caaataaata aaaaatataa tatgtctaca atgccaccaa cttccaaacg tactagaaag 720 agaactagaa ccgatgataa tgctgaacca actattcaag atccttcacc gccacttgct 780 aatgttgaac ccacaattca agagactcca ccgctggttg aagttagtga tgagactaat 840 tcaactgaaa tcaatgagac aaatagtaat actcatgaag aaacaaatgt attaactaat 900 gtgcactcct ctccaatcga gacagttact gagaggaact tcaattttca acaggttatt 960 gcctctatct ccactgtgga caatcaaagt ctcttgaagg ataaaatttc ttatgatcat 1020 tggttcagta ccttgaaaga aaatgcaatc atgattagtc cagattttct tgactttatt 1080 aacaaagaca ccatggatct ccaacagtac ccaactgtct accaaacatt cttagatcgt 1140 cttatttgtg ccacaattga cccacatatc aaacaatctt taaaatatcg gaagttatca 1200 ggaaagaaaa tgcttagtga aattatctct caatttggtt ctatgactat taaagacaag 1260 gttaactact ccataattat ggctaccaaa attcattctg atgtcaccac tcatttagac 1320 aaaatgaatt tactggctca attttacgca tttcttatgc gtcaacctca ggaccttaaa 1380 cctgcccttt tacttattgc gggtatcaat gactcacgtt tcaatgaaac atactttcac 1440 gataacaaag aattaacgat ctctaagttg gaacggtata tcattaatca aaactccaaa 1500 attactccgt cggtaccaac accttctcca cgtgacgctg ttacgggttt actggttacc 1560 cagcctacgt ccgctctggg acaaagtgaa atgtttaata cacaatgttt taattgcttt 1620 gggttgggcc acactgcaca tcgctgtgcc tctccgaaac gtcttggcca aataaacaac 1680 cttagatcta aattacttgc gtttgaaact cgatccaaat ccagaaagcg ttttccacct 1740 caacctcctc ctacgaatcg gtcggcaaac tcaacaataa taactaatcc ctcacctact 1800 gacgatacca tctcgtccac cactgaagat tcttttccac gggacgtctt tggatgggcg 1860 gcatcatctg accaaatcaa atcaaatgaa aacctttctt tattttttga cacaggtgcc 1920 tcggcacatc ttatcaataa tctcaatcta cttcatgatt acaaaccctc taaagaaaac 1980 aaacatgtga tcactgcgaa cggtgataaa attcctatct taggaactgg aactgtgaaa 2040 ctccaacatg gtcaacacaa gatatcactt cgcaattgcc aatattctcc acatctacac 2100 atcaatctta tctcacccag actcttactt gatgattcca ctagcatgac tatcacccaa 2160 tccgggattt atcactccaa aattggacaa attgggtatt attcgactga agatggtaat 2220 ctaatcaagt gtatgttccg tcccattacc attcctcatc tttcgttata ttctcaatat 2280 gtcgaaatgg gtcttcaatc taacaatgta ctacgtaaca ttccagcttt cacggtccat 2340 attcctcaac tacatgactc tcttggacac acatctactc aacaagtttc aaatgtcatg 2400 aaacgtttca atgtcactac tgacaacatt ggtacggact gcgaaacttg tcggcttgga 2460 aaagccatta ctcagattcc caagatctca acccatacca tctctagtca ttgcttagaa 2520 ctacttcacg ttgatgttca tggaccaata tccgttccta gtatatttca agaacgttat 2580 tttcttgtga tccttgatga ctactcaaaa tacttgacag ttcaaccact atgcaacaaa 2640 tctgatgcta ctgccgaaat tatcgaattc atcaatcatt gggaaaagtt ctttctggga 2700 aatggcaatt accatacgaa aattctccgg tcggataatg gaggggaatt cttaaacaaa 2760 acattgacta cctatcttga ttcaaaatat attactcacc aaacctccaa tgcctatgaa 2820 catcatgaga atggcgctgc agaacgagct attagatcgg ttaaagacat ggctcgagta 2880 atattgcttc aatccaaatt accagtgccg ttttggtccc tagcaacccg atgtgctgcg 2940 tttgttatga atcgtcttcc tcataaaaca ataaatggta agattcctta tgaagtatgg 3000 actaaacaac ttgtcaatct caaaatgatg aaaccgtttg gctctcaagt atatgtgaaa 3060 attcctattg gagtcaaaag tttttctgca caagcacttt ctggaatcat ggtgggatat 3120 gccactaata agaaaggcta ccttgtatat gatcccacac aaaatcgaat attcacatcc 3180 tcacaaataa tatgtcatcc gagcatttat ccagcagcca accttacgtt taacgaaccc 3240 ttaattatct catcgaaagt cacggctgct catcttcacc cccttaccat ttccaattta 3300 gttattccac ctaccaatgc tgtatctgag acacctcttg caaattgtgt gctctcctca 3360 aattcgtcag tatgtcccaa agtttgccaa ttacaaactg tcttggaaca tggggaggat 3420 aaaatatatg cactgattat accaatatcg atcggcaata tgaaacgcac aagaacaaat 3480 gaaaacaaaa tatgccagct agatgaatcg aacaatacca ccataccaga tagtgtaatt 3540 ttatcggcta acaatgtgtt attaaactta gaatcgagat cttccattcc caaaagttat 3600 aaggaagcta taacatctaa tgaaaaatcc aaatgggctg atgctatgga tagcgagttt 3660 aattcattac aatccaacaa cacgtggtca cttgaaccac taccggaggg acgcaaagct 3720 attggtatca aatgggttta tacaatcaag gacaccggtc gctacaaggc tcgccttgtg 3780 gcacttggtt atcgacaaca ggctggtgtg gactttgttc gaaactatgc tcccgtgatt 3840 cgtggagaat caatcaaact aatctttgca ctcgcgtcaa aatccaaact aaagattcat 3900 tccatagatg ttaccacagc tttcctcgac ggggaaatac tggaactcat atttgtgaca 3960 caacctccgg gatatgaaga taagaagcgt cctaatcatg tttgtaagct caatcgcagc 4020 ttatatgggc ttaagcagct gccactaatg tggaacatta aattaaatga tgtacttata 4080 aaggaaggtt tccgtcgact tggtggtgac ttagggatat acattagtaa ggacaaaaga 4140 acaataatgg gagtttatgt tgacgacatt ctcatctgtg caccttctga cagtgaaatt 4200 gaccaagtaa agaacaacgt gagaaaatac ttctcaataa ctgataatgc attatgccga 4260 acattccttg caattaacgt ctatcaccaa gcaaatgaca taagattaag tttgaatgat 4320 tatataagga gaatgattca ggagttaaaa ttatctgtct cagaaacaaa cccagtatct 4380 ataccatctg atgtcaatta tgaaatattt agagttaacg aaaatgatga tgagaaacca 4440 tgtgatcaaa ccaaataccg aagtttgata ggcaagctct tgtttgccag taatactata 4500 aggtttgaca tcgcctattc tgtcaactcc ctatccaggt ttatcaacga tcccaaagaa 4560 aaacattgga ttgcagctgt caaggtggta aaatatctca gtggtactca acggtatggt 4620 atttgttcat acggtaacgg tgacttcaat atttacgctg atagtgattg ggcttccact 4680 ccatctgatc gacagtctat tacggggtac attgttacct atgctggagc gccgataagt 4740 tggcgttcca agaagcagaa cgtgatagcc ttgagtacga cagaagcgga gtttatggct 4800 ctcacagagt ccataaagga agccctttgg ctaatataca tttttcgaga tattaatgtg 4860 atattgaaat taccaattgt gatatatgaa gacaacctac tgtgtcagaa attacttgaa 4920 aatcctcgat tccataatag gacaaaacac attgacttga aatataaatt taccaaagac 4980 catatagaag ctggtacaat caaagtggaa tcaactaatt cagcagataa cttagccgac 5040 atgctaacta aacctttacc aaaaattaaa tttaaacatt taagatggct agcgggatta 5100 agacctttag attgattaga taatgataaa atgaaataaa gattaatttg gagatcaagt 5160 tgatggggaa gtgttggaaa aatgaaatat gatcaatcct gcatctagaa cctgtggcag 5220 aatgaaacct acgagattat gaatgacttg tgaatacaag ttgaatgtta cagaatgtta 5280 ccaagaaggt tacacttgaa tatatgaatg actagaaagt gaattgaatg ttacagaacc 5340 tgaataacaa tgttacacga atgtgtgaat gatatgagtt tatctatagt aatgtgacat 5400 atacacaaag gtgtgaatga ccgagaaaac agatgttaca ttacgggcac tggagagtgc 5460 aagtctaaag aatcttggag tagaaataag taatataaaa aggaccaaag attctttaga 5520 gaaaagtaaa tgaaactata ttagatttta tataactaac taacaaataa ataaaaaata 5580 taatatgtct acaatgccac caacttccaa acgtactaga aagagaacta gaaccgatga 5640 taatgctgaa ccaactattc aagatccttc accgccactt gctaatgttg aacccacaat 5700 tcaagagact ccaccgctgg ttgaagttag tgatgagact aattcaactg aaatcaatga 5760 gacaaatagt aatactcatg aagaaacaaa tgtattaact aatgtgcact cctctccaat 5820 cgagacagtt actgagagga acttcaattt tcaacaataa taatattggt tggatttaca 5880 cgacgttgtt gttacaaaga cgtgagcaga g 5911 //