ID AF061869; SV 1; linear; genomic RNA; STD; VRL; 4616 BP. XX AC AF061869; XX DT 04-JUN-1998 (Rel. 56, Created) DT 14-FEB-2002 (Rel. 70, Last updated, Version 2) XX DE Beet soil-borne mosaic virus RNA2, complete genome. XX KW . XX OS Beet soil-borne mosaic virus OC Viruses; Riboviria; Benyviridae; Benyvirus. XX RN [1] RP 1-4616 RX DOI; 10.1007/s007050170014. RX PUBMED; 11811691. RA Lee L., Telford E.B., Batten J.S., Scholthof K.B., Rush C.M.; RT "Complete nucleotide sequence and genome organization of Beet soilborne RT mosaic virus, a proposed member of the genus Benyvirus"; RL Arch. Virol. 146(12):2443-2453(2001). XX RN [2] RP 1-4616 RA Batten J.S., Rush C.M., Scholthof K.-B.G.; RT ; RL Submitted (28-APR-1998) to the INSDC. RL Plant Pathology and Microbiology, Texas A&M University, 120 Peterson RL Building, College Station, TX 77843-2132, USA XX DR MD5; 9d200b0163720d1483d632bb794c1e89. DR EuropePMC; PMC5172238; 15629034. XX FH Key Location/Qualifiers FH FT source 1..4616 FT /organism="Beet soil-borne mosaic virus" FT /strain="EA" FT /mol_type="genomic RNA" FT /note="RNA2; Furovirus; submitter suggested classification: FT genus Benevirus, family Tubiviridae" FT /db_xref="taxon:76343" FT misc_feature 1 FT /note="5'cap" FT CDS 146..721 FT /codon_start=1 FT /product="coat protein" FT /note="21KDa" FT /db_xref="GOA:O89946" FT /db_xref="InterPro:IPR001337" FT /db_xref="UniProtKB/TrEMBL:O89946" FT /protein_id="AAC18568.1" FT /translation="MVDEGRYMTWKDATHNKLMTDRWARVSSVQATINQALSLDLSKAA FT SLPVIKANFSSLGANWSEDGDVFVAPMVRFPVTLNQFGALVLWLNLSDPAFAILMTKVF FT TLTNAGGADNASASSRREVVAGSRPETSGKSVGTDESGSYTLTTTLQAFNQAIRLPEVL FT WTRDKFEREWNLPWTPTRGVTPAVPRTN" FT CDS 146..2206 FT /codon_start=1 FT /transl_except=(pos:719..721,aa:Tyr) FT /product="75KDa protein" FT /note="translational readthrough of the 21 kDa coat protein FT gene; sequence contains an amber codon at amino acid (Tyr) FT position 192, which is a putative readthrough codon (UAG)" FT /db_xref="GOA:O72590" FT /db_xref="InterPro:IPR001337" FT /db_xref="UniProtKB/TrEMBL:O72590" FT /protein_id="AAC18569.1" FT /translation="MVDEGRYMTWKDATHNKLMTDRWARVSSVQATINQALSLDLSKAA FT SLPVIKANFSSLGANWSEDGDVFVAPMVRFPVTLNQFGALVLWLNLSDPAFAILMTKVF FT TLTNAGGADNASASSRREVVAGSRPETSGKSVGTDESGSYTLTTTLQAFNQAIRLPEVL FT WTRDKFEREWNLPWTPTRGVTPAVPRTNYQLNAARTMAHIRAALKARLYPGDSIEWVGW FT VHSYPPPPYDGYDVPSLDIINEKLAADDVGGLVLPTPDIPGGPNFEVSEDIEQTGRNGL FT WLMVGLLLAALAVGVGTAAYHRRKLRSRLVELKSLWFSRGSGGGGDFTVELPTRTTDAF FT SLGTTISEHAPPPVGTMRHRSTTATDSHEALPFETWVYLNLSRVYFSIGCSDLFYATRE FT FVTVFNGEFEGLIELLEASDEDDGVYTDAESAVIVGTSAIVNDHDQFDLNTVILEKRIK FT FKRLSLEEAELNRQESVTIEFADEERRTLMHKLESDRLEATHKVNKAAADAEAALSVAV FT LAAKEARTYDDKLAFDRACKEKELRLRELEVERMPGKTERYIHTGIQGGAQLAGALAVG FT SMLRTRGVSNITPSNASGSPTGIGRVRSASQPVPTSLSGGSVLGANNNNSVGSVSSGSR FT VESLGYNSAIRNHNTFWSKLRIGSEWRQNSISRMQARPLAGGGIPPSAPAV" FT CDS 2125..3273 FT /codon_start=1 FT /product="42KDa protein" FT /db_xref="GOA:O72591" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:O72591" FT /protein_id="AAC18570.1" FT /translation="MAPEQHKQNASETASGRRNSSVRSRGMSKDDWSVTHPDDVFSIIE FT KTLVEDGYKWHGVKPGHCDWDKLEQSGAIKNFKGTLEGEVDSSCSLTCNAAAIKLDIVE FT RLDVSSDWSARVGIVLGAPGVGKSTSIKHILDTYGSRYKMVLCLPVKQLLDGVFSGRMD FT TFLIDDIFSRSVDYGKYHTMLVDEITRVHMCEVLVLAGYLGIKNVICFGDPAQGINFKA FT GSAVNYNFPVIAECYSSRRFGVATADLINSCNGGGKSVVGNNDVKDNWTFEELCGKIEE FT MSTVLVATHATKEFLADDGIEAVYYEDAQGMTYDVVTIVLKDEFDDDAICDSNVRAVLL FT TRARKGGLLKVDPNIAARFKNGDFNSRGVSKACTGDTFCEDR" FT CDS 3273..3629 FT /codon_start=1 FT /product="13KDa protein" FT /db_xref="GOA:O72592" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:O72592" FT /protein_id="AAC18571.1" FT /translation="MSREITARANKNVPIVVGVCVVAFFVLLAFMQQKHKTHSGGDYGV FT PTFSNGGKYRDGTRSADFNSNNHRAYGCGGSKSSVTGKVGQQLLVLALVVAVFVLFMRG FT CWSSPEHICNGSCG" FT CDS 3307..3513 FT /codon_start=1 FT /product="8KDa protein" FT /note="putative open reading frame nested within the 13 kDa FT gene" FT /db_xref="GOA:O72593" FT /db_xref="UniProtKB/TrEMBL:O72593" FT /protein_id="AAC18572.1" FT /translation="MCLLLLVFVLLLSLYCWLSCNKNIRRTLVAITGFQLFRTVESIGM FT GLGLRTLIVIIIVLMAVEVLNLV" FT CDS 3613..4011 FT /codon_start=1 FT /product="15KDa protein" FT /db_xref="GOA:O72594" FT /db_xref="InterPro:IPR010470" FT /db_xref="UniProtKB/TrEMBL:O72594" FT /protein_id="AAC18573.1" FT /translation="MVLVVKVDFSTIVLYIVAGVVVVSVLYSPFFSNEVKAGGYAGAIF FT PNGGCIMDRNSFAQFGGCDIPKYVADSISRVAIKELDADIKADLNSVVAKRVVLYEGLA FT QLCYRVFSWLVCLFMVCLMLFVWFWYHS" FT CDS 4039..4401 FT /codon_start=1 FT /product="14KDa protein" FT /db_xref="InterPro:IPR009884" FT /db_xref="UniProtKB/TrEMBL:O72595" FT /protein_id="AAC18574.1" FT /translation="MEKSNSIGVYVKDPITNDCRLFSVKCGNWCLFTNHVFVTYRGKND FT DEKVVKDTCRLHFHVKCVSCSSKVTFKANNRDHLEWLSKGFVRVNRNFSIVGACSKCRG FT VFDSCAQQDELDNNVV" FT polyA_site 4616 XX SQ Sequence 4616 BP; 1124 A; 779 C; 1220 G; 1493 T; 0 other; ggattctaat tattatctcc attgaataga atttcaccaa ctattgtctg atatcttgtc 60 ctgggggcaa ttttattcag tgccctaact ttggaaatac gtgcgagtaa taagtagccc 120 ccgtccagga gaagttgctt acaatatggt tgatgaaggt agatatatga catggaaaga 180 tgcaactcat aataagttga tgaccgaccg atgggcacgc gtatcaagcg tccaggcgac 240 cattaaccag gctttgagcc tcgatctgtc taaagccgca agcttacctg ttattaaggc 300 caattttagt agtctcggtg ctaattggtc tgaagatggt gatgtgtttg tggcacctat 360 ggttcggttt ccagttaccc tcaatcaatt tggtgcattg gttttgtggc tcaacttatc 420 tgaccctgct ttcgctattc ttatgacgaa agtttttacg ttgactaatg ccggtggagc 480 cgacaatgcc tccgccagtt cacgtcgtga agttgtggct gggagccgac ccgaaacttc 540 tggtaagtct gtaggtaccg atgagagtgg cagttatact ttgaccacca ctttacaagc 600 ttttaatcaa gctatccgct tacctgaggt tctgtggact cgtgataagt ttgaacggga 660 gtggaatctg ccatggaccc ctactagggg tgttactcct gccgttccac gcaccaatta 720 gcaattaaat gctgctcgaa ctatggcaca tattcgagca gcattaaagg cgcgtctgta 780 tcctggtgac agtattgagt gggttggatg ggtgcatagt tacccccctc caccatatga 840 tgggtacgat gttccgtctt tagatattat taatgagaaa cttgctgctg atgatgttgg 900 tggtttggtg ttacctacac ctgatattcc tggtggtccc aattttgagg tctccgagga 960 tattgagcaa actggtcgga atggtttgtg gttgatggtc gggttgctat tagctgcctt 1020 ggctgttggt gttgggactg ctgcctacca tcgtcgcaag ttgcgtagta ggttagttga 1080 actaaagagt ctatggtttt ctaggggttc tggtggcggc ggtgatttca ctgttgagtt 1140 accaactaga actactgatg cctttagttt aggtaccact atttctgaac atgctccacc 1200 tcctgtaggt actatgcgtc atcgttcgac tacggcgact gatagtcatg aggcccttcc 1260 ttttgaaaca tgggtttatt taaatctctc tcgtgtgtat tttagtatcg ggtgttctga 1320 tctcttttat gcgactagag aatttgttac tgtgtttaat ggggagtttg agggtcttat 1380 cgaactactt gaggcgtctg atgaggatga tggtgtttat actgatgctg agagtgctgt 1440 cattgtgggt actagtgcta ttgttaatga ccacgatcaa tttgatctca atactgtgat 1500 tcttgaaaag cgcataaagt ttaaacggct ttctttagag gaggcggaac ttaatcgtca 1560 ggagtctgtg accatcgagt ttgccgatga ggaacgtcgt acgctcatgc ataagttaga 1620 aagcgataga cttgaggcga cgcataaggt gaataaggct gctgctgatg ctgaggcagc 1680 tctatcagtt gctgttctgg ctgctaaaga ggctcgtact tatgatgata aattggcttt 1740 tgatagagct tgtaaggaaa aggagctaag gctaagagag cttgaggttg agcgtatgcc 1800 cgggaagact gaaagatata ttcacacagg tatacaaggt ggtgctcaac tcgctggtgc 1860 tttagctgtc ggtagtatgt tacgaacacg tggtgttagt aatataactc cgagtaatgc 1920 tagtggtagt cctaccggta ttggtcgtgt tcgtagtgct tctcagcccg tacccactag 1980 tttgtctggt ggttctgttc tgggggctaa taataataat agtgttggca gtgttagttc 2040 aggaagtagg gtagagtcgt tagggtataa ttcggctatt cgcaatcata acaccttttg 2100 gtccaaactt cgtattggaa gtgaatggcg ccagaacagc ataagcagaa tgcaagcgag 2160 accgctagcg ggcggcggaa ttcctccgtc cgctcccgcg gtatgagtaa ggatgactgg 2220 tctgtcaccc acccagatga tgttttctct attattgaga aaacattggt ggaggatggg 2280 tacaaatggc atggggtaaa acccggtcat tgcgattggg ataagctaga gcagtctggt 2340 gctattaaga attttaaagg tactttagaa ggcgaggtcg atagtagttg ttcattaaca 2400 tgtaacgccg cggcaattaa gttggatata gtagaaagat tagacgtgtc ttctgactgg 2460 tccgctcggg taggcattgt gttaggtgcg cctggtgttg ggaaatcgac ttcaattaag 2520 cacatcttgg acacttatgg ttctcgttat aaaatggtgt tatgtttacc agtcaaacag 2580 ttactcgacg gggtgttttc gggtagaatg gacacttttc tgattgatga catatttagt 2640 cgctctgtag actatggtaa gtaccacact atgttagtag acgagatcac tcgcgttcat 2700 atgtgtgagg tcctggtgtt ggctggttat ttaggcatta aaaatgttat atgtttcggc 2760 gaccctgcac aaggtattaa ctttaaggca gggtctgctg ttaactataa ctttcctgtt 2820 attgctgagt gctactctag tcgtaggttc ggggttgcca cggctgatct cataaactcc 2880 tgcaatggtg gtgggaaatc agttgttggt aataacgatg ttaaagacaa ctggacattt 2940 gaagaattgt gcggtaaaat cgaggaaatg tccactgtgc ttgttgcaac acacgccaca 3000 aaggagttct tagctgatga tggcattgaa gctgtatatt acgaagatgc acaaggtatg 3060 acttatgatg tggttaccat tgtgcttaag gatgagtttg acgacgatgc catctgtgat 3120 agcaatgtga gagctgtgtt gttaactagg gctagaaaag gcggtttact taaggttgat 3180 cctaatattg cggccaggtt taaaaatggt gattttaatt cacgtggagt tagtaaggct 3240 tgcacaggtg ataccttttg cgaggataga taatgtctag agaaataacg gcccgtgcta 3300 ataagaatgt gcctattgtt gttggtgttt gtgttgttgc tttctttgta ttgctggctt 3360 tcatgcaaca aaaacataag acgcactctg gtggcgatta cggggttcca actttttcga 3420 acggtggaaa gtatagggat gggactaggt ctgcggactt taatagtaat aatcatcgtg 3480 cttatggctg tggaggttct aaatctagtg tgactggcaa ggttgggcag cagctgcttg 3540 tgcttgccct agtagtagct gtctttgttt tgttcatgcg tggttgctgg tcctctcctg 3600 agcatatttg caatggttct tgtggttaag gttgattttt ctactatagt tttgtatata 3660 gttgctggtg ttgtagttgt gagtgtgctg tactcaccat tctttagtaa tgaagtgaag 3720 gctggcggtt atgccggtgc catttttcca aatgggggtt gcattatgga taggaattcg 3780 tttgcacagt ttggtggttg tgatatccca aaatatgtgg ctgattctat ctctcgtgtg 3840 gccatcaagg aattagacgc cgatataaaa gccgacttga atagtgttgt tgctaaaaga 3900 gtagtgttgt acgaaggttt ggcacagtta tgttataggg ttttctcttg gttggtgtgt 3960 ttgttcatgg tgtgtttaat gttgtttgtg tggttttggt atcatagtta attaggtgaa 4020 cgcatcttat tattagtaat ggagaaaagt aatagcatag gggtgtatgt taaggaccct 4080 atcacaaatg attgtaggtt gtttagcgtt aaatgtggca actggtgctt attcacaaat 4140 catgtttttg tgacttaccg tggaaagaac gatgatgaga aagtcgttaa agacacgtgt 4200 aggttgcatt ttcacgtaaa atgtgtatct tgctccagta aagtcacttt taaagcgaac 4260 aacagagatc atttggaatg gttgtctaaa ggtttcgttc gtgttaatag aaatttttct 4320 attgtaggtg cttgtagtaa gtgccgcggt gtgtttgata gttgtgcgca gcaagatgag 4380 ttggacaaca atgttgtcta actctttaaa gagactgttg tatatataat aatcagggcc 4440 atgccacagg cctcccattg ggttgttccg agggttgttg tggtgatata aatgatatta 4500 ttaataataa taatagtgtc atcggtaata tattattgtt actggtgtta aggttgtaat 4560 gtactgaccg ggtgtgaatt gtaccggtcc ttgtagggtt tattttcagt ttattg 4616 //