ID AF057136; SV 1; linear; genomic RNA; STD; VRL; 8744 BP. XX AC AF057136; XX DT 23-SEP-1998 (Rel. 57, Created) DT 31-AUG-2025 (Rel. 144, Last updated, Version 7) XX DE Rupestris stem pitting associated virus-1, complete genome. XX KW . XX OS Grapevine rupestris stem pitting-associated virus OC Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; OC Tymovirales; Betaflexiviridae; Quinvirinae; Foveavirus; OC Foveavirus rupestris. XX RN [1] RP 1-8744 RX PUBMED; 9714258. RA Meng B., Pang S.Z., Forsline P.L., McFerson J.R., Gonsalves D.; RT "Nucleotide sequence and genome structure of grapevine rupestris stem RT pitting associated virus-1 reveal similarities to apple stem pitting RT virus"; RL J. Gen. Virol. 79(Pt 8):2059-2069(1998). XX RN [2] RP 1-8744 RA Meng B., Pang S.-Z., Forsline P.L., McFerson J.R., Gonsalves D.; RT ; RL Submitted (03-APR-1998) to the INSDC. RL Plant Pathology, Cornell University, Geneva, NY 14456, USA XX DR MD5; 23f10732f1ab018a9af4f883f5cca1ee. XX FH Key Location/Qualifiers FH FT source 1..8744 FT /organism="Grapevine rupestris stem pitting-associated FT virus" FT /mol_type="genomic RNA" FT /db_xref="taxon:196400" FT CDS 62..6547 FT /codon_start=1 FT /product="replicase" FT /protein_id="AAC35498.1" FT /translation="MALSYRPAVEEVLAKFTSDEQSRVSATALKALVDLEESQHNLFSF FT ALPDRSKERLISSGIYLSPYSFRPHSHPVCKTLENHILYNVLPSYVNNSFYFVGIKDFK FT LQFLKRRNKDLSLVALINRFVTSRDVSRYGSEFVISSSDKSSQVVSRKGIGDSNTLRRL FT VPRVISTGARNLFLHDEIHYWSISDLINFLDVAKPSMLLATAVIPPEVLVGSPESLNPW FT AYQYKINGNQLLFAPDGNWNEMYSQPLSCRYLLKARSVVLPDGSRYSVDIIHSKFSHHL FT LSFTPMGNLLTSNMRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKP FT DKESAEAKLRQLIEKPTGREIKFIEDFSSLVINCGRSGSLLMPNISKLVISFFCRMMPN FT ALARLSSSFRECSLDSFVYSLEPFNFSVNLVDITPDFFEHLFLFSCLNELIEEDVEEVM FT DNSWFGLGDLQFNRQRAPFFLGSSYWLNSKFSVEHKFSGTINSQIMQVILSLIPFSDDP FT TFRPSSTEVNLALSEVKAALEATGQSKLFRFLVDDCAMREVRSSYKVGLFKHIKALTHC FT FNSCGLQWFLLRQRSNLKFLKDRASSFADLDCEVIKVYQLVTSQAILPEALLSLTKVFV FT RDSDSKGVSIPRLVSRNELEELAHPANSALEEPQSVDCNAGRVQASVSSSQQLADTHSL FT GSVKSSIETANKAFNLEELRIMIRVLPEDFNWVAKNIGFKDRLRGRGASFFSKPGISCH FT SYNGGSHTSLGWPKFMDQILSSTGGRNYYNSCLAQIYEENSKLALHKDDESCYEIGHKV FT LTVNLIGSATFTISKSRNLVGGNHCSLTIGPNEFFEMPRGMQCNYFHGVSNCTPGRVSL FT TFRRQKLEDDDLIFINPQVPIELNHEKLDRSMWQMGLHGIKKSISMNGTSFTSDLCSCF FT SCHNFHKFKDLINNLRLALGAQGLGQCDRVVFATTGPGLSKVLEMPRSKKQSILVLEGA FT LSIETDYGPKVLGSFEVFKGDFHIKKMEEGSIFVITYKAPIRSTGRLRVHSSECSFSGS FT KEVLLGCQIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESER FT LVSPDLSAPAISKQLEENAYAENEMIALFCIRHHVRPIVITPEYEVSWKFGEGEWPLCG FT ILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMM FT YLAEAFEAFDICAKCDINGEIEVINPCGKISALFDITNEHIRHVEKIGNGPQSIKVDEL FT RKVKRSALDFLSMNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFSDAKPWLSGIST FT TDIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKNDLEMDDSCK FT VAKAGRSKKEGWDVVTFEVFLRKVAGLKAGHCVIFDEVQLFPPGYIDLCLLIIRSDAFI FT SLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKTYRYNIESRRFVNPMFESRLPCHFK FT KGSMTAAFADYAIFHNMHDFLLARSKGPLDAVLVSSFEEKKIVQSYFGMKQLTLTFGES FT TGLNFKNGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVESFLSHFAGKPLYH FT FLTAKSGENVIRDLLPGEPNFFSGFNVSIGKNEGVREEKLCGDPWLKVMLFLGQDEDCE FT VEEMESECSNEEWFKTHIPLSNLESTRARWVGKMALKEYREVRCGYEMTQQFFDEHRGG FT TGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLD FT SFLSKIPLKASHNSIMFHEAVQEFEAKKASKSAATIENHAGRSCRDWLLDVALIFMKSQ FT HCTKFDNRLRVAKAGQTLACFQHAVLVRFAPYMRYIEKKLMQALKPNFYIHSGKGLDEL FT NEWVRTRGFTGICTESDYEAFDASQDHFILAFELQIMKFLGLPEDLILDYEFIKIHLGS FT KLGSFSIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCANRRLRLKTEH FT EGFLNMICLKAKVQFVSNPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLENCIDNYA FT IEVSYAYRLGELAIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID" FT CDS 6578..7243 FT /codon_start=1 FT /product="24.4 kDa protein" FT /protein_id="AAC35499.1" FT /translation="MNNLVKALSAFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISED FT ENFIAFTAGVPDSPNLTGRYIKPYSPGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQN FT ISIPKEAHFIKSKTCRFGVNTCKYLSSFGFKVSSDGLDKVIVGSPFTLDVEGVLICFGK FT EAVDLAVAHNSEFKLPCEVRGSTFNVVTLLKSRDPTPEDRHWFYIAATRHREKLIIMQ" FT CDS 7245..7598 FT /codon_start=1 FT /product="12.8 kDa protein" FT /protein_id="AAC35500.1" FT /translation="MPFQQPANWAKTITPLTVGLGIGLVLHFLRKSNLPYSGDNIHQFP FT HGGRYRDGTKSITYCGPKQSFPSSGIFGQSENFVPLMLVIGLIAFIHVLSVWNSGLGRN FT CNCHPNPCSCRQQ" FT CDS 7519..7761 FT /codon_start=1 FT /product="8.4 kDa protein" FT /protein_id="AAC35501.1" FT /translation="MYCLFGILVLVGIVIAIQILAHVDSSSGNHQGCFIRATGESILIE FT NCGPSEALASTVKEVLGGLKALGVSRAVEEIDYHC" FT CDS 7771..8550 FT /codon_start=1 FT /product="28 kDa coat protein" FT /protein_id="AAC35502.1" FT /translation="MASQIGKLPGESNEAFEARLKSLELARAQKQPEGSNAPPTLSGIL FT AKRKRIIENALSKTVDMREVLKHETVVISPNVMDEGAIDELIRAFGESGIAESVQFDVA FT IDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLE FT TGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGIKRAPTKAEMVANIASFEVQ FT VLRQAMAEGKRSSNLGEISGGTAGALINNPFSNVTHE" XX SQ Sequence 8744 BP; 2430 A; 1678 C; 2075 G; 2560 T; 1 other; cgataaacat aacaacagaa tctgcattgc agtaatattc cttgaatata attgcaacgc 60 aatggccctc tcttataggc ctgctgttga agaggtgctc gcaaaattca cctctgatga 120 acaatccagg gtttctgcta cagctctcaa ggcattagta gacttagagg aaagtcagca 180 caatttgttc tctttcgcat tgcctgatag aagcaaagaa aggctgatat cttctggcat 240 ttacttaagt ccttacagtt tcagacccca ctcacatcca gtttgtaaaa ctttagaaaa 300 tcacattttg tacaatgttt tacctagtta tgttaataat tcattttact ttgtaggaat 360 caaggatttt aagctgcagt tcttgaaaag gaggaataag gatctcagct tggtagcact 420 cataaatagg tttgtgacaa gtcgtgatgt tagtaggtat gggtctgagt tcgttataag 480 ttctagtgac aaatcaagtc aggttgtcag tagaaagggc attggtgatt ctaacacact 540 ccggagattg gtcccacgtg taatttccac aggtgccagg aatctttttc tgcatgatga 600 gattcactac tggtcaatta gtgatctgat caattttttg gacgttgcca agccaagcat 660 gctcttggca actgcagtaa tccctccaga agtgctggtt ggctctccag agagtcttaa 720 cccttgggcc taccagtata aaatcaatgg caaccaactg ctcttcgcac cagatggcaa 780 ctggaatgag atgtactcac aacctttgtc atgcagatac ctgctcaagg ccagatctgt 840 agttctgccc gatggctcac gctactcggt tgacatcatt cactcaaaat ttagtcacca 900 cttgcttagt ttcaccccta tgggtaatct tttgacttca aacatgcgat gtttttctgg 960 cttcgatgca ataggcataa aagatcttga acctctaagc cgcggcatgc acagttgctt 1020 cccagtacat catgatgttg taactaagat atatctttat ttgagaactc tcaagaagcc 1080 agataaggag tctgccgagg caaagcttcg acaactcata gaaaaaccca cagggaggga 1140 gataaagttt atcgaggatt tttcctcact agtaataaat tgtgggagga gtggctcttt 1200 gcttatgccc aacatttcta agttggtcat atcattcttt tgccggatga tgccaaatgc 1260 actcgccagg ctctcttcta gctttcgaga gtgttcgcta gattcatttg tgtactcact 1320 tgagcccttt aatttttccg ttaatttagt ggatataact cctgatttct ttgagcattt 1380 atttctcttc tcctgcctaa atgagttgat cgaggaggac gttgaagagg tcatggacaa 1440 ttcttggttt ggacttgggg acttacaatt caatcgccag agggccccgt tctttcttgg 1500 gtcttcatat tggctcaact ccaaattttc agttgagcac aagttttcag gcaccatcaa 1560 ttctcaaatc atgcaagtta ttttatcttt gatcccattt tctgatgatc ccacttttag 1620 gccatcttct acagaggtta accttgcact atcagaggtt aaggctgcgc tagaagctac 1680 tgggcagtca aaattgttca ggtttttggt ggacgactgt gctatgcgtg aggttagaag 1740 ttcctataag gtgggccttt ttaagcacat aaaagccctc actcattgct ttaattcttg 1800 tggcctccaa tggttcctcc ttaggcaaag gtccaacctc aaatttctga aggacagggc 1860 atcgtccttt gctgatcttg attgtgaggt tatcaaagtt tatcagcttg taacatcaca 1920 ggcaatactt cctgaggctc tgcttagctt gaccaaagtc tttgtcaggg attctgactc 1980 aaagggtgtt tccattccca gattggtctc gagaaatgag ctagaggaac tagctcaccc 2040 agctaattca gcccttgagg agcctcaatc agttgattgt aatgcaggca gggttcaagc 2100 aagcgtttca agttcccagc agcttgccga cacccactct cttggtagcg ttaagtcatc 2160 aattgagaca gctaacaagg cttttaactt ggaggagcta aggatcatga ttagagtctt 2220 gccggaggat tttaactggg tggcgaagaa cattggtttt aaagacaggc tgagaggcag 2280 gggtgcatca ttcttctcaa aaccaggaat ttcatgtcat agttacaatg gtgggagcca 2340 cacaagctta gggtggccaa agttcatgga tcagattcta agctccactg gtggacgtaa 2400 ttactacaat tcatgcctgg ctcagatcta tgaggaaaat tcaaaattgg ctcttcataa 2460 ggatgatgag agttgctatg aaattgggca caaagttttg actgttaatt taatcggctc 2520 agcaactttc actattagta agtcgcgaaa tttggttggg ggtaatcatt gcagcctgac 2580 aattgggcca aatgagtttt tcgaaatgcc taggggcatg caatgcaatt acttccatgg 2640 ggtttccaat tgtacgccag ggcgggtatc gctgaccttt aggcgccaaa agttggaaga 2700 tgatgatttg atcttcataa atccacaggt gcccattgag ctcaatcatg aaaagcttga 2760 ccgaagtatg tggcagatgg gccttcatgg aattaagaaa tctatttcta tgaatggcac 2820 gagttttacc tcagacctat gctcttgttt ctcttgccac aactttcata aattcaagga 2880 tctcatcaat aacttgagat tggccctagg agcacaaggg ctaggtcagt gtgacagggt 2940 tgtgtttgca acaacaggtc ctggtctatc taaggtttta gaaatgcctc ggagcaaaaa 3000 gcaatcaatt ttggttcttg aaggtgccct atccatagaa acagattatg gtccaaaagt 3060 cctggggtct tttgaagttt tcaaagggga ctttcacatt aagaagatgg aggaaggttc 3120 aatttttgta ataacgtaca aggccccaat tagatccact ggcaggttga gggttcacag 3180 ttcagaatgc tcattttccg gatccaaaga ggtattgcta ggctgccaga ttgaggcatg 3240 tgctgattat gatattgatg attttaacac tttctctgtg cctggtgatg gcaattgctt 3300 ttggcattct gttggttttt tacttagcac tgatggactt gccctaaagg ccggtattcg 3360 atctttcgtg gagagtgagc gcttggtaag tccagatctt tcagccccag caatttctaa 3420 acaattggaa gagaatgctt atgccgagaa tgagatgatc gcattattct gcattcggca 3480 ccacgtaagg cctatagtga tcacaccaga atatgaagtt agttggaaat tcggggaagg 3540 tgagtggccc ctatgtggaa ttctttgcct taaatcaaat cacttccaac catgcgcccc 3600 actgaatggt tgcatgatca cagccattgc ttcagcactt ggaaggcgtg aagttgatgt 3660 gttaaattat ctgtgtagac ccagcactaa tcatattttt gaggagcttt gtcagggagg 3720 gggccttaac atgatgtatt tagctgaagc ttttgaggcc tttgacattt gcgctaaatg 3780 tgatataaat ggagagattg aagtgattaa tccgtgtggt aaaatttctg cattgtttga 3840 cataactaat gagcacataa ggcatgttga gaaaataggt aatggccctc agagcataaa 3900 agtggatgaa ttgcggaagg tcaagcgatc cgccctcgat ttcctttcaa tgaatgggtc 3960 taaaataacc tacttcccaa gctttgagcg ggctgaaaag ttgcaaggat gtttgctagg 4020 gggcctaact ggcgttataa gtgatgagaa gttcagtgat gcaaaacctt ggctttctgg 4080 tatatctact actgatatta agccaaggga attgactgtc gtgcttggta catttggggc 4140 tgggaagagt ttcttgtaca agagtttcat gaaaaggtct gagggtaaat tcgtaacctt 4200 tgtttctccc agacgtgctt tagcaaattc aatcaaaaat gatcttgaaa tggatgatag 4260 ctgcaaagtt gctaaagcag gtaggtcaaa gaaggaaggg tgggatgtag taacttttga 4320 ggttttcctt agaaaagttg caggattgaa ggctggccac tgtgtgattt ttgatgaggt 4380 ccagttgttt cctcctggat acatcgatct atgcttgctt attatacgta gtgatgcttt 4440 catttcactt gctggtgatc catgtcaaag cacatatgac tcgcaaaagg atcgggcaat 4500 tttgggcgct gagcagagtg acatacttag actgcttgag ggcaaaacgt ataggtataa 4560 catagaaagc aggaggtttg tgaacccaat gttcgaatca agactgccat gtcacttcaa 4620 aaagggctcg atgactgccg ctttcgctga ttatgcaatc ttccataata tgcatgactt 4680 tctcctggcg aggtcaaaag gtcccttgga tgccgttttg gtttccagtt ttgaggagaa 4740 aaagatagtc cagtcctact ttggaatgaa acagctcaca ctcacatttg gtgaatcaac 4800 tgggttgaat ttcaaaaatg ggggaattct catatcacat gattcctttc acacagatga 4860 tcggcggtgg cttactgctt tatctcgctt cagccacaat ttggatttgg tgaacatcac 4920 aggtctgagg gtggaaagtt ttctctcgca ctttgctggc aaacccctct accatttttt 4980 aacagccaaa agtggggaga atgtcatacg agatttgctc ccaggtgagc ctaacttctt 5040 cagtggcttt aacgttagca ttggaaagaa tgaaggtgtt agggaggaga agttatgtgg 5100 tgacccatgg ttaaaagtta tgcttttcct gggtcaagat gaggattgtg aagttgaaga 5160 gatggagtca gaatgctcaa atgaagaatg gtttaaaacc cacatcccct tgagtaatct 5220 ggagtcaacc agggccaggt gggtgggtaa aatggccttg aaagagtatc gggaggtgcg 5280 ttgtggttat gaaatgactc aacaattctt tgatgagcat aggggtggaa ctggtgagca 5340 actgagcaat gcatgtgaga ggtttgaaag catttaccca aggcataaag gaaatgattc 5400 aataaccttc ctcatggctg tccgaaagcg tctcaaattt tcgaagcccc aggttgaagc 5460 tgccaaactg aggcgggcca aaccatatgg gaaattctta ttagattctt tcctatccaa 5520 aatcccattg aaagccagtc ataattccat catgtttcat gaagcggtac aggagtttga 5580 ggcgaagaag gctagtaaga gtgcagcaac tatagagaat catgcaggta ggtcatgcag 5640 ggattggtta ttagatgttg ctctgatttt tatgaagtca caacactgta ctaaatttga 5700 caacaggctt agagtagcta aagctgggca aacccttgct tgcttccaac atgctgttct 5760 ggttcgcttt gcaccctata tgagatacat tgagaaaaag ctaatgcaag ctctgaagcc 5820 taacttctac atccattcag ggaaaggtct ngacgagctg aacgagtggg tcagaactag 5880 aggattcact ggaatttgca cagaatcaga ctacgaagcc tttgatgctt cccaagacca 5940 cttcatccta gcattcgaat tgcagataat gaaatttttg gggttacctg aagatttaat 6000 tttggactat gaattcataa aaattcattt gggatcaaag ctcggatcat tctctataat 6060 gaggtttact ggggaggcca gcacatttct gtttaacact atggctaaca tgttgttcac 6120 ctttctgagg tacgaactaa caggctctga gtcaatagca tttgcaggtg atgacatgtg 6180 tgctaatcga aggttgcggc ttaaaacaga gcatgagggt tttctgaaca tgatttgcct 6240 taaggccaag gttcagtttg tttccaatcc cacattctgc ggatggtgtt tatttaagga 6300 agggatcttc aagaagcctc aattaatctg ggagcggata tgcattgcta gggagatggg 6360 caacctggag aattgtattg acaattatgc gatagaggtc tcctatgcat accgactggg 6420 agagctagcc attgaaatga tgaccgagga agaagtggag gcccattata attgtgttag 6480 attcttggtc aggaacaagc ataagatgag atgctcaatt tcaggcctat ttgaagctat 6540 tgattaggcc ttaagtattt ggcattattt gagtattatg aataatttag ttaaagcatt 6600 gtcagcattt gagtttgtag gtgttttcag tgtgcttaaa tttccagtag tcattcatag 6660 tgtgcctggt agtggtaaaa gtagtttaat aagggagcta atttccgagg atgagaattt 6720 catagctttc acagcaggtg ttccagacag ccctaatctc acaggaaggt acattaagcc 6780 ttattctcca gggtgtgcag tgccagggaa agttaatata cttgatgagt acttgtccgt 6840 ccaagatttt tcaggttttg atgtgctgtt ctcggaccca taccaaaaca tcagcattcc 6900 taaagaggca catttcatca agtcaaaaac ttgtaggttt ggcgtgaata cttgcaaata 6960 tctttcctcc ttcggtttta aggttagcag tgacggtttg gacaaagtca ttgtggggtc 7020 gccttttaca ctagatgttg aaggggtgct aatatgcttt ggtaaggagg cagtggatct 7080 cgctgttgcg cacaactctg aattcaaatt accttgtgaa gttagaggtt caacttttaa 7140 cgtcgtaact cttttgaaat caagagatcc aaccccagag gataggcact ggttttacat 7200 tgctgctaca agacacaggg agaaattgat aatcatgcag taagatgcct tttcagcagc 7260 ctgcgaattg ggcaaaaacc ataactccat tgacagttgg cttgggcatt gggcttgtgc 7320 tgcattttct gaggaagtca aatctacctt attcagggga caacatccat caattccctc 7380 acggtgggcg ttacagggac ggtacaaaaa gtataactta ctgtggtcca aagcaatcct 7440 tccccagctc tgggatattc ggccaatctg agaattttgt gcccttaatg cttgtcatag 7500 gtctaatcgc attcatacat gtattgtctg tttggaattc tggtcttggt aggaattgta 7560 attgccatcc aaatccttgc tcatgtagac agcagtagtg gcaaccacca aggttgcttc 7620 attagggcca ctggagagtc aattttgatt gaaaactgcg gcccaagtga ggcccttgca 7680 tccactgtga aggaggtgct gggaggtttg aaggctttag gggttagccg tgctgttgaa 7740 gaaattgatt atcattgtta aattggctga atggcaagtc aaattgggaa actccccggt 7800 gaatcaaatg aggcttttga agcccggcta aaatcgctgg agttagctag agctcaaaag 7860 cagccggaag gttctaatgc accacctact ctcagtggca ttcttgccaa acgcaagagg 7920 attatagaga atgcactttc aaagacggtg gacatgaggg aggttttgaa acacgaaacg 7980 gtggtgattt ccccaaatgt catggatgaa ggtgcaatag acgagctgat tcgtgcattt 8040 ggtgaatctg gcatagctga aagcgtgcaa tttgatgtgg ccatagatat agcacgtcac 8100 tgctctgatg ttggtagctc ccagaggtca accctgattg gcaagagtcc attttgtgac 8160 ctaaacagat cagaaatagc tgggattata agggaggtga ccacattacg tagattttgc 8220 atgtactatg caaaaatcgt gtggaacatc catctggaga cggggatacc accagctaac 8280 tgggccaaga aaggatttaa tgagaatgaa aagtttgcag cctttgattt tttcttggga 8340 gtcacagatg agagtgcgct tgaaccaaag ggtggaatta aaagagctcc aacgaaagct 8400 gagatggttg ctaatatcgc ctcttttgag gttcaagtgc tcagacaagc tatggctgaa 8460 ggcaagcgga gttccaacct tggagagatt agtggtggaa cggctggtgc actcatcaac 8520 aacccctttt caaatgttac acatgaatga ggatgacgaa gtcagcgaca attccgcagt 8580 ccaataattc cccgatttca aggctgggtt aagcctgttc gctggaatac cgtactaata 8640 gtattccctt tccatgctaa atcctattta atatataagg tgtggaaagt aaaagaagat 8700 ttggtgtgtt tttatagttt tcattcaaaa aaaaaaaaaa aaaa 8744 //