ID AF055887; SV 1; linear; genomic RNA; STD; VRL; 4136 BP. XX AC AF055887; XX DT 11-MAY-1998 (Rel. 55, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 3) XX DE Southern bean mosaic virus strain SBMV-B(ARK), complete genome. XX KW . XX OS Southern bean mosaic virus OC Viruses; Riboviria; Solemoviridae; Sobemovirus. XX RN [1] RP 1-4136 RX DOI; 10.1007/s007050050451. RX PUBMED; 9856101. RA Lee L., Anderson E.J.; RT "Nucleotide sequence of a resistance breaking mutant of southern bean RT mosaic virus"; RL Arch. Virol. 143(11):2189-2201(1998). XX RN [2] RP 1-4136 RA Lee L., Anderson E.J.; RT ; RL Submitted (28-MAR-1998) to the INSDC. RL Plant Pathology, University of Arkansas, 217 Plant Science Bldg, RL Fayetteville, AR 72701, USA XX DR MD5; 8f299d16cc819e73df68469f52cfd345. DR EuropePMC; PMC112128; 10864632. DR EuropePMC; PMC3791421; 23830075. DR RFAM; RF01838; sobemo_FSE. XX FH Key Location/Qualifiers FH FT source 1..4136 FT /organism="Southern bean mosaic virus" FT /strain="SBMV-B(ARK)" FT /isolate="Arkansas" FT /mol_type="genomic RNA" FT /note="bean strain" FT /db_xref="taxon:12139" FT CDS 93..539 FT /codon_start=1 FT /product="unknown" FT /note="ORF1" FT /db_xref="GOA:O73571" FT /db_xref="UniProtKB/Swiss-Prot:O73571" FT /protein_id="AAC15982.1" FT /translation="MSYRFLTVRAFGFTGFHCDATRLLSETEVIDVPSSLDFVGETELR FT LETAWPQCEENCYTILPRFNVQVDFEYYPVRVEIVCRVCAASLSVIFSKWDFYCSRRGH FT FVPVDQNGDLFRIGTLQETGEKYFYFCDKSICRQCIIQAAHHHS" FT CDS 506..3394 FT /codon_start=1 FT /product="VPg-serine protease-RNA dependent RNA polymerase" FT /db_xref="GOA:O72157" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/Swiss-Prot:O72157" FT /protein_id="AAC15983.1" FT /translation="MYHPGRSPSFLITLANVICAAILFDIHTGGYQPGSLIPIVAWMTP FT FVTLLWLSASFATYLYKYVRTRLLPEEKVARVYYTAQSAPYFDPALGVMMQFAPSHGGA FT SIEVQVNPSWISLLGGSLKINGDDASNESAVLGSFYSSVKPGDEPASLVAIKSGPQTIG FT FGCRTKIDGDDCLFTANHVWNNSMRPTALAKRGKQVAIEDWETPLSCDHKMLDFVVVRV FT PKHVWSKLGVKATQLVCPSDKDAVTCYGGSSSDNLLSGTGVCSKVDFSWKLTHSCPTAA FT GWSGTPIYSSRGVVGMHVGFEDIGKLNRGVNAFYVSNYLLRSQETLPPELSVIEIPFED FT VETRSYEFIEVEIKGRGKAKLGKREFAWIPESGKYWADDDDDSLPPPPKVVDGKMVWSS FT AQETVAEPLNYQRAAGSRPLPPFLNLQATTSKKEKQPLQEECPLDLLGSRLASLESCVE FT KILQMKSLELLGSSQNCQTSPGPSEAPKQSFTPCYSKQESLIPLESQGILKELVKTSLS FT ATPPPNPVTVSVEKPGPSTQSTKKSARRRNRRKSTRKPVQGVPLSRLASTNKDLLKRHL FT ELVALCVTERLFLLSEAEDLLDESPVDLVRRGLCDPVRLFVKQEPHASRKVREGRFRLI FT SSVSLVDQLVERMLFGPQNQLEIAEWEHIPSKPGMGLSLRQQAKSLFDDLRVKHSRCPA FT AEADISGFDWSVQDWELWADVEMRIVLGGFGHKLAKAAQNRFSCFMNSVFQLSDGTLIE FT QQLPGIMKSGSYCTSSTNSRIRCLMAELIGSPWCIAMGDDSVEGWVDGAKDKYMRLGHT FT CKDYKPCATTISGRLYEVEFCSHVIREDRCWLASWPKTLFKYLSEGKWFFEDLERDVSS FT SPHWPRIRHYVVGNTPSPHKTNLQNQSPRYGEEVDKTTVNQGYSEHSGSPGHSIEEAQE FT PEAAPFCCEAASVYPGWGVHGPYCSGDYGSLT" FT CDS 1825..2223 FT /codon_start=1 FT /product="unknown" FT /note="ORF3" FT /db_xref="GOA:O73564" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/Swiss-Prot:O73564" FT /protein_id="AAC15984.1" FT /translation="MPLRFVGQSACKFRELCRKDTPDEVLRATRVFPELSDFSWPERGS FT KAELHSLLLQAGKFNPTGIPRNLEGACQNLLERYPASKSCYCLRGEAWSFDAVYEEVCK FT KAQSAEINEKASPGSPPLPPRLNQQRPP" FT CDS 3207..4007 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:O72158" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/Swiss-Prot:O72158" FT /protein_id="AAC15985.1" FT /translation="MAKRLTKQQLTKAIANTLEAPATQSRRPRNRRRRRSAARQPQSTQ FT AGVSMAPIAQGTMVRLREPSLRTAGGVTVLTHSELSTELSVTNAIVITSELVMPYTMGT FT WLRGVAANWSKYSLLSVRYTYLPSCPSTTSGSIHMGFQYDMADTLPVSVNQLSNLRGYV FT SGQVWSGSSGLCYINGTRCLDTANAITTTLDVGQLGKKWYPFKTSTDFTTAVGVNVNIA FT TPLVPARLIIAMLDGSSSTAVSTGRLYVSYTIQLIEPTALALNN" XX SQ Sequence 4136 BP; 986 A; 987 C; 1071 G; 1092 T; 0 other; cacaaaatat aagaaggaaa gctggatttc ctacctttgt gtttccattg tcgaagcatt 60 ggtcaacgat tacaaaacgg tgcattttct gcatgagcta tcgtttccta acagttagag 120 cattcggctt taccggtttt cattgcgacg ccacgcgctt gctaagtgaa acagaagtca 180 tagacgttcc atcgtctctt gattttgttg gtgaaaccga actcagactt gaaactgctt 240 ggccccagtg tgaagagaat tgttacacga ttctccctcg attcaacgtt caagttgatt 300 tcgagtatta ccctgtgcgt gtcgagattg tgtgccgagt ctgcgctgca tccctatctg 360 tcatcttcag caagtgggac ttctactgta gtaggagagg ccattttgtt cctgtagatc 420 aaaacgggga tctgtttagg attggaacgc tccaggagac gggagagaaa tacttctact 480 tctgtgataa atctatctgt agacaatgta tcatccaggc cgctcaccat cattcctgat 540 aacgttggca aacgttatct gcgcggcgat tctgttcgac atccatacgg ggggttacca 600 accaggctca ctaattccaa tagtggcttg gatgaccccg ttcgttactc tgctctggtt 660 gagcgcgtca ttcgcgacat acctttataa gtatgtgaga actcggctgc tcccagagga 720 gaaggttgcc agggtctatt atacggcgca gtctgcaccg tattttgacc ctgccctggg 780 tgtcatgatg caattcgccc ctagccatgg cggcgccagc atagaagttc aagtaaaccc 840 ctcatggatt agcctcttag gtggctctct caagataaac ggagatgacg cctctaatga 900 gtctgctgtg ttgggaagct tttattcttc tgtgaaacct ggtgatgaac cagctagttt 960 ggtagctatt aagagtggtc ctcagaccat cggttttggt tgtaggacca agatagatgg 1020 tgatgactgt ctttttactg caaaccatgt ttggaacaat tccatgcgcc ctaccgctct 1080 agcgaaacgt ggcaagcagg ttgcgatcga ggattgggag accccactct cttgcgacca 1140 taagatgctt gatttcgtag tggtgcgtgt gccaaaacat gtgtggtcca agctaggagt 1200 gaaagcgact caattggttt gtccatcaga taaggatgcc gtaacctgct acggtggatc 1260 tagttcagac aacttactgt cggggacggg cgtttgtagt aaggtcgact tctcatggaa 1320 gttgacccac tcatgcccca cggcggctgg ttggagtggg acaccgatct actctagcag 1380 aggtgtggta ggaatgcacg ttgggtttga agatatcgga aaactcaatc gtggtgtgaa 1440 cgctttctac gtgtcaaact acttattgag gtctcaagag actcttcctc cagagttgtc 1500 cgtgatcgaa attcctttcg aagacgttga gactcggagt tatgagttta ttgaggttga 1560 gattaaaggc agaggtaagg ctaaacttgg taagcgtgag ttcgcttgga ttccagaatc 1620 aggaaaatac tgggctgatg atgacgacga ctccttgccc ccacccccta aggtggtaga 1680 cggcaagatg gtctggagtt ctgctcagga aactgttgcg gagcctttaa actaccagcg 1740 ggcggcaggg tcaaggccct tgccgccctt tctcaacttg caggctacga cttcaaagaa 1800 ggagaagcag cctctacaag aggaatgccc cttagatttg ttgggcagtc ggcttgcaag 1860 tttagagagc tgtgtagaaa agatactcca gatgaagtcc ttagagctac tagggtcttc 1920 ccagaattgt cagacttctc ctggcccgag cgaggctcca aagcagagct tcactccctg 1980 ttactccaag caggaaagtt taatcccact ggaatcccaa ggaatcttga aggagcttgt 2040 caaaacctcc ttgagcgcta ccccgcctcc aaatcctgtt actgtctccg tggagaagcc 2100 tggtccttcg acgcagtcta cgaagaagtc tgcaagaagg cgcaatcggc ggaaatcaac 2160 gagaaagcca gtccagggag tccccctctc ccgcctcgcc tcaaccaaca aagacctcct 2220 taagaggcat ctagaattag ttgctttgtg tgttaccgag agattgtttc tactcagcga 2280 agccgaggac ttacttgacg aatctcctgt ggacttggtt cgcaggggtt tgtgtgaccc 2340 ggttcggctg tttgttaagc aggagcccca cgcctcccga aaggtgagag agggccgctt 2400 ccgcttgata tcatctgttt cgctggtcga ccagcttgta gagcgtatgc tctttgggcc 2460 tcaaaaccag cttgaaatcg ctgagtggga gcatattccc tcaaaacctg gcatgggctt 2520 atcgctgcgg caacaggcca aaagcctgtt tgacgacttg agagttaaac actcccgttg 2580 tcctgcagct gaagctgaca tttcaggttt tgattggtct gttcaggact gggagttgtg 2640 ggctgatgta gagatgagaa ttgttctggg gggctttggc cataaactgg ctaaagccgc 2700 ccagaatagg ttttcgtgtt tcatgaactc agtcttccag ctctcggatg gcacactcat 2760 agaacagcaa ctgcctggta tcatgaagtc tggttcatat tgtacctcct cgaccaactc 2820 cagaattcgt tgccttatgg ctgagcttat tggctccccg tggtgtatcg ccatgggtga 2880 tgattctgtt gaaggttggg ttgatggcgc aaaggacaag tacatgagac tagggcacac 2940 gtgcaaggac tataaaccct gtgcaacaac catttccggt cgcttatacg aggtagagtt 3000 ctgctctcac gttataaggg aagatcgatg ttggttggcg tcgtggccta aaactctgtt 3060 taaatacttg tctgagggca agtggttctt tgaggactta gagcgagacg tcagttcatc 3120 accccactgg cccagaatca gacactatgt agtggggaat actccatcgc cccacaaaac 3180 taatttacaa aatcaaagtc cgcgctatgg cgaagaggtt gacaaaacaa cagttaacca 3240 aggctatagc gaacactctg gaagccccgg ccactcaatc gaggaggccc aggaaccgga 3300 ggcggcgccg ttctgctgcg aggcagcctc agtctaccca ggctggggtg tccatggccc 3360 ctattgctca ggggactatg gttcgcttac gtgaaccatc gcttagaacg gctggaggtg 3420 tgacagtcct gacgcactct gagctctcaa ctgagctctc agtgacgaat gcgatagtta 3480 taacctctga gctcgttatg ccctacacaa tgggcacttg gcttcgaggc gttgcggcca 3540 attggtcgaa atatagtttg ttgtcggtga gatatacgta tctcccctct tgtccttcaa 3600 cgacatctgg gtccattcat atgggtttcc aatatgatat ggctgacact cttcccgtat 3660 ccgttaacca gttatccaac cttagaggtt atgtatcagg gcaggtctgg tctggatcct 3720 ctggcttgtg ctacataaat ggcacgaggt gtcttgacac ggccaatgct atcacgacca 3780 cactggacgt tggacagctt ggcaagaagt ggtatccttt caagactagc acagatttca 3840 caacggctgt tggcgtaaat gtcaacattg ccactcccct ggtcccggcg aggcttataa 3900 tagccatgct ggatgggtcg agttctacgg ctgtgagtac tggacgctta tacgtgtcgt 3960 atactattca actgatagag cccactgctt tggccttgaa caactgagga gttgtataat 4020 aatacctgca cccctctctt tggcagggag ggtgtttcgt tttcacaatg ccacgtgttt 4080 gagggagaat gcacgttaat catccctccg ctagtgatgg agcgtaatcc aaaagt 4136 //