ID AF051830; SV 1; linear; genomic RNA; STD; VRL; 7199 BP. XX AC AF051830; XX DT 21-DEC-1998 (Rel. 58, Created) DT 21-DEC-1998 (Rel. 58, Last updated, Version 1) XX DE Hepatitis E virus strain TK15/92, complete genome. XX KW . XX OS Paslahepevirus balayani OC Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; OC Hepelivirales; Hepeviridae; Orthohepevirinae; Paslahepevirus. XX RN [1] RP 1-7199 RX DOI; 10.1016/S0168-1702(98)00079-3. RX PUBMED; 9833882. RA Gouvea V., Snellings N., Popek M.J., Longer C.F., Innis B.L.; RT "Hepatitis E virus: complete genome sequence and phylogenetic analysis of a RT Nepali isolate"; RL Virus Res. 57(1):21-26(1998). XX RN [2] RP 1-7199 RA Gouvea V.; RT ; RL Submitted (02-MAR-1998) to the INSDC. RL Department of Virus Diseases, Walter Reed Army Institute of Research, 14th RL and Dahlia St., Bldg. 40, Washington DC 20307-5100, USA XX DR MD5; eddfb741c2302c8da59c68b234d4da63. DR EuropePMC; PMC112117; 10846102. DR EuropePMC; PMC1168788; 15994825. DR EuropePMC; PMC130758; 12202555. DR EuropePMC; PMC1594735; 16954296. DR EuropePMC; PMC2753377; 19651539. DR EuropePMC; PMC3187576; 21972239. DR EuropePMC; PMC3624379; 23388713. DR EuropePMC; PMC4163165; 25187005. DR EuropePMC; PMC4408071; 25906163. DR EuropePMC; PMC4572330; 15237431. DR EuropePMC; PMC4676335; 24974734. DR EuropePMC; PMC5011639; 27630719. DR EuropePMC; PMC5827406; 29321328. DR EuropePMC; PMC6133284; 30204796. DR RFAM; RF00550; HepE_CRE. XX FH Key Location/Qualifiers FH FT source 1..7199 FT /organism="Paslahepevirus balayani" FT /strain="TK15/92" FT /mol_type="genomic RNA" FT /note="isolated from the bile of experimentally infected FT cynomolgous monkey" FT /note="country: Nepal" FT /db_xref="taxon:1678143" FT CDS 28..5109 FT /codon_start=1 FT /product="nonstructural polyprotein" FT /note="encodes cysteine protease, RNA helicase and FT RNA-dependent RNA polymerase; ORF1" FT /db_xref="GOA:Q9WLL5" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR002589" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008748" FT /db_xref="InterPro:IPR022202" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q9WLL5" FT /protein_id="AAC97186.1" FT /translation="MEAHQFIKAPGITTAIEQAALAAANSALANAVVVRPFLSHQQIEI FT LINLMQPRQLVFRPEVFWNHPIQRVIHNELELYCRARSGRCLEIGAHPRSINDNPNVVH FT RCFLRPVGRDVQRWYTAPTRGPAANCRRSALRGLPAADRTYCFDGFSGCSFPPETGIAL FT YSLHDMSPSDVAEAMFRHGMTRLYAALHLPPEVLLPPGTYRTASYLLIHDGRRVVVTYE FT GDTSAGYNHDVSNLRSWIRTTKVTGDHPLVIERVRAIGCHFVLLLTAAPEPSPMPYVPY FT PRSTEVYVRSIFGPGGTPSLFPTSCSTKSTFHAVPAHIWDRLMLFGATLDDQAFCCSRL FT MTYLRGISYKVTVGTLVANEGWNASEDALTAVITAAYLTICHQRYLRTQAISKGMRRLE FT REHAQKFITRLYSWLFEKSGRDYIPGRQLEFYAQCRRWLSAGFHLDPRVLVFDESAPCH FT CRTVIRKVLSKFCCFMKWLGQECTCFLQPAEGVVGDQGHDNEAYEGSDVDPAESAISDI FT SGSYVVPGTALQPLYQALDLPAEIVARACRLTATVKVSQADGRIDCETLLGNKTFRTSF FT VDGAVLETNGPERHNLSFDASQSTMAAGPFSLTYAASAAGLEVRYVAAGLDHRAIFAPG FT VSPRSTPGEVTAFCSALYRFNRAAQRHSLTGNLWFHPEGLIGLFAPFSPGHVWESANPF FT CGESTLYTRTWSEIDAVSSPARPDLGFVSEPSIPSRAATPTLAAPLPPPAPDPSPPPFA FT PAPDEPAPGTTAGAPAITHQMARHRRLLFTYPDGSKVFAGSLFESTCTWLVNASNVDHR FT PGGGLCHAFYQRYPASFDAASFVMRDGAAAYTLTPRPIIHAVAPDYRLEHNPKRLEAAY FT RETCSRLGTAAYPLLGTGIYQVPIGPSFDAWERNHRPGDELYLPELAARWFEANRPTRP FT TLIITEDVARTANLAIELDSATDVGRACAGCRVTPGVVQYQFTAGVPGSGKSRSITQAD FT VDVVVVPTRELRNAWRRRGFAAFTPHTAARVTQGRRVVIDEAPSLPPHLLLLHMQRAAT FT VHLLGDPNQIPAIDFEHAGLVPAIRPDLAPTSWWHVTHRCPADVCELIRGAYPMIQTTS FT RVLRSLFWGEPAVGQKLVFTQAGKAANPGSVTVHEAQGATYTETTIIATADARGLIQSS FT RAHAIVALTRHTEKCVIIDAPGLLREVGISDAIVNNFFLAGGEIGHQRPSVIPRGNPDA FT NVDTLAAFPPSCQISAFHQLAEELGHRPAPVAAVLPPCPELEQGLLYLPQELTTCDSVV FT TFELTDIVHCRMAAPSQRKAVLSTLVGRYGRRTKLYNASHSDVRDSLARFIPAIGPVQV FT TTCELCELVEAMVEKGQDGSAVLELDLCNRDVSRITFFQKDCNKFTTGETIVHGKVGQG FT ISAWSKTFCALFGPWFRAIEKAILALLPQGVFYGDAFDDTVFSAAVAAAKASMVFENDF FT SEFDSTQNNFSLGLECAIMEGCGMPQWLIRLYHLIRSAWILQAPKESLRGFWKKHSGEP FT GTLLWNTVWNMAVITHCYDFRDLQVAAFKGDDSIVLCSEYRQSPGAAVLIAGCGLKLKV FT DFRPIGLYAGVVVAPGLGALPDVVRFAGRLTEKNWGPGPERAEQLRLAVSDFLRKLTNV FT AQMCVDVVSRVYGVSPGLVHNLIGMLQAVADGKAHFTESVKPVLDLTNSIWCRVE" FT CDS 5106..5477 FT /codon_start=1 FT /product="immunogenic protein" FT /note="ORF3" FT /db_xref="GOA:Q9YWQ8" FT /db_xref="InterPro:IPR003384" FT /db_xref="UniProtKB/TrEMBL:Q9YWQ8" FT /protein_id="AAC97187.1" FT /translation="MNNMSFAAPTGSRSCALGLFCCCSSCFCLCCPRHRPVSRLAAVVG FT GAAAVPAVVSGVTGLILSPSQSPIFIQPTPSPPMSPLRPGLDLVFANPPDHSAPLGVTR FT PSAPPLPHVVDLPQLGPRR" FT CDS 5147..7129 FT /codon_start=1 FT /product="capsid protein" FT /note="ORF2" FT /db_xref="GOA:Q9WLL4" FT /db_xref="InterPro:IPR004261" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q9WLL4" FT /protein_id="AAC97188.1" FT /translation="MRPRPILLLFLMFLPMLPAPPPGQPSGRRRGRRSGGSGGGFWGDR FT VDSQPFAIPYIHPTNPFAPDVTAAAGAGPRVRQPARPLGSAWRDQAQRPAATSRRRPTT FT AGAAPLTAVAPAHDTPPVPDVGSRGAILCRQYNLSTSPLTSSVATGTNLVLYAAPLSPL FT LPLQDGTNTHIMATEASNYAQYRVARAAIRYRPLVPNAVGGYAISISFWPQTTTTPTSV FT DMNSITSTDVRILVQPGIASELVIPSERLHYRNQGWRSVETSGVAEEEATSGLVMLCIH FT GSPVNSYTNTPYTGALGLLDFALELEFRNLTPGNTNTRVSRYSSTARHRLRRGADGTAE FT LTTTAATRFMKDLYFTSTNGVGEIGRGIALTLFNLADTLLGGLPTELISSAGGQLFYSR FT PVVSANGEPTVKLYTSVENAQQDKGIAIPHDIDLGESRVVIQDYDNQHEQDRPTPSPAP FT SRPFSVLRANDVLWLSLTAAEYDQSTYGSSTGPVYVSDSVTLVNVATGAQAVARSLDWT FT KVTLDGRPLSTIQQYSKTFFVLPLRGKLSFWEAGTTKAGYPYNYNTTASGQLLVENAAG FT HRVAISTYTTSLGAGPVSISAVAVLAPHSALALLEDTLDYPARAHTFDDFCPECRPLGL FT QGCAFQSTVAELQRLKMKVGKTREL" XX SQ Sequence 7199 BP; 1212 A; 2285 C; 1882 G; 1820 T; 0 other; aggcagacca catatgtggt cgatgccatg gaggcccatc agtttattaa ggctcctggc 60 atcactactg ctattgagca ggctgctcta gcagcggcca actctgccct ggcgaatgct 120 gtggtagtta ggccttttct ctctcaccag cagattgaga ttctcattaa cctaatgcaa 180 cctcgccagc ttgttttccg ccccgaggtt ttctggaatc atcccatcca gcgtgtcatc 240 cataacgagc tggagcttta ctgccgcgcc cgctccggcc gctgtcttga aattggcgcc 300 cacccccgct caataaacga taaccctaat gtggtccacc gctgcttcct ccgccctgtc 360 gggcgtgatg ttcagcgctg gtatactgct cccactcgcg ggccggctgc taattgccgc 420 cgttccgcgt tgcgcgggct tcccgctgct gaccgcacat actgcttcga cgggttttct 480 ggctgtagct tcccccccga gacgggtatc gccctttact ccctccatga tatgtcacca 540 tctgatgttg ccgaggccat gttccgccat ggtatgacgc ggctttatgc tgccctccat 600 cttccgcctg aggtcttgct tccccctggc acatatcgca ccgcatcgta cttgctgatt 660 catgacggca ggcgcgttgt ggtgacgtat gagggtgata ctagtgctgg ttataaccac 720 gatgtctcca acctgcgctc ctggattaga accaccaagg ttaccggaga ccatcccctc 780 gtcatcgagc gggttagggc catcggctgc cactttgttc ttttgctcac ggcagccccg 840 gagccatcac ctatgcctta tgtcccttac ccccggtcta ccgaggtcta tgtccgatcg 900 atcttcggcc cgggtggtac cccttcttta ttcccaacct catgctccac taagtcgacc 960 ttccatgctg tccctgccca tatttgggac cgtctaatgc tgttcggggc cactttggat 1020 gaccaagcct tttgctgctc ccgtttaatg acctatcttc gcggcattag ctacaaggtc 1080 actgttggca cccttgtggc taatgaaggc tggaatgcct ctgaggacgc cctcacagct 1140 gtcatcactg ccgcctacct taccatttgc caccagcggt atctccgcac ccaggctata 1200 tccaagggga tgcgtcgtct ggaacgggag catgcccaga agtttataac acgcctttac 1260 agctggctct tcgagaagtc cggccgtgat tacatccctg gccgtcagtt ggagttctac 1320 gcccagtgta ggcgctggct ttcggccggc tttcatcttg atccacgggt gttggttttt 1380 gacgagtcgg ccccctgcca ttgtaggacc gtgatccgca aggtgctctc gaagttttgc 1440 tgctttatga agtggcttgg tcaggagtgc acctgttttc ttcaacctgc agaaggtgtc 1500 gtcggcgatc agggtcatga taacgaggcc tatgaggggt ccgatgttga ccctgctgag 1560 tccgccatta gtgacatctc tgggtcctat gtcgtccctg gcacagccct ccaaccgctc 1620 taccaggccc tcgatctccc cgctgagatt gtggctcgtg cgtgccggct gaccgccaca 1680 gtaaaggtat cccaggccga tgggcggatc gattgcgaga cccttctcgg taacaaaacc 1740 ttccgcacgt cgtttgtcga cggggcggtc ttagagacca atggcccaga gcgccacaat 1800 ctctcctttg atgccagtca gagcactatg gccgctggcc ctttcagtct cacctatgcc 1860 gcctctgcgg ctgggctgga ggtgcgctat gttgctgccg ggcttgacca tcgggcgatt 1920 tttgcccccg gtgtttcacc ccggtcaacc cccggcgagg tcaccgcctt ctgctctgcc 1980 ctatataggt tcaaccgtgc ggcccagcgc cattcgctga ccggtaactt atggttccat 2040 cctgaggggc ttattggcct ctttgccccg ttttcgcccg ggcatgtctg ggagtcggct 2100 aatccgtttt gtggggagag cacactttac acccgtactt ggtcggagat tgatgccgtc 2160 tctagtccag cccggcccga cttaggtttt gtgtctgagc cctctatacc tagtagggcc 2220 gccacgccta ctttggcggc ccctctaccc cctcctgcac cggacccttc cccccctcct 2280 tttgccccgg cgcccgatga gccggctcct ggtactaccg ccggggcccc ggccataacc 2340 caccagatgg ctcggcaccg ccgcctgctc ttcacctacc cggatggctc taaggtgttc 2400 gccggctcgc tgttcgagtc gacatgcacg tggctcgtta acgcgtctaa tgttgaccat 2460 cgccctggcg gcgggctttg ccatgcattt taccaaaggt accccgcctc ttttgatgct 2520 gcctcttttg tgatgcgcga cggtgcggcc gcgtacacac taaccccccg gccaataatt 2580 catgctgtcg cccctgatta taggttggaa cataacccaa agaggcttga ggctgcttat 2640 cgggaaactt gttcccgcct cggtaccgct gcatacccgc tcctcgggac cggcatatac 2700 caggtgccga tcggtcccag ctttgacgcc tgggagcgga accaccgccc cggggatgag 2760 ttgtaccttc ctgaacttgc tgccagatgg tttgaggcca ataggccgac ccgcccaact 2820 ctcattataa ctgaggatgt tgcacggaca gcgaatctgg ccatcgagct tgactcagcc 2880 acagatgtcg gccgggcctg tgctggctgt cgggttaccc ccggcgttgt tcagtaccag 2940 tttaccgcag gtgtgcctgg gtccggcaag tcccgctcta tcacccaagc cgatgtggac 3000 gttgtcgtgg tcccgacgcg tgagttgcgt aatgcctggc gccgtcgcgg ctttgctgct 3060 ttcaccccgc atactgccgc tagagtcacc caggggcgcc gggttgtcat tgatgaggct 3120 ccatccctcc cccctcacct gctgctgctc cacatgcagc gggccgccac cgtccacctt 3180 cttggcgacc cgaatcagat cccagccatt gactttgagc acgctgggct cgtccccgcc 3240 atcaggcccg acttagcccc tacctcctgg tggcatgtta cccatcgttg ccctgcggat 3300 gtatgcgagt tgatccgtgg tgcatacccc atgatccaga ccactagccg ggttctccgt 3360 tcgttgttct ggggtgagcc tgccgtcggg cagaaattag tgttcaccca ggcgggcaag 3420 gccgccaacc ccggctcagt gacagtccac gaggcgcagg gcgctaccta tacggagacc 3480 actattattg ccacggcaga cgcccggggc cttattcagt cgtctcgggc tcatgccatt 3540 gttgctctga cgcgccacac tgagaagtgc gtcatcattg acgcaccagg cctgctccgc 3600 gaggtgggca tctccgatgc aatcgttaat aactttttcc tcgctggtgg cgaaattggt 3660 catcagcgcc catctgttat tccccgtggc aaccctgacg ccaatgttga caccctggct 3720 gccttccctc cgtcttgcca gattagtgct ttccatcagt tggctgagga gctcggccac 3780 agacctgccc ctgttgcagc cgttctacca ccctgccccg agctcgaaca gggcctcctc 3840 tacctgcccc aggagctcac cacctgtgat agtgtcgtga catttgaatt aacagatatt 3900 gtgcattgcc gcatggccgc tccgagccag cgcaaggccg tgctgtccac actcgtgggc 3960 cgctacggcc gtcgcacaaa gctgtacaat gcttctcact ctgatgttcg cgactctctc 4020 gcccgtttta tcccggccat tggccccgta caggttacaa cttgtgagtt gtgcgagcta 4080 gtggaggcca tggtcgagaa gggccaagat ggctccgccg tccttgagct cgacctttgt 4140 aatcgtgacg tgtccaggat cacctttttc cagaaagatt gtaacaagtt taccacaggt 4200 gagaccattg tccatggtaa agtgggccag ggcatctcgg cctggagcaa gaccttctgc 4260 gccctctttg ggccttggtt ccgcgctatt gagaaggcta ttctggccct gctccctcag 4320 ggtgtgtttt atggtgatgc ctttgatgac accgtcttct cggccgctgt ggccgcagca 4380 aaggcatcta tggtgtttga gaatgatttt tctgagtttg actccaccca gaataatttt 4440 tctctgggcc tagagtgtgc tattatggag gggtgtggga tgccgcagtg gctcatccgc 4500 ctgtatcatc ttataaggtc cgcgtggatc ttgcaggccc cgaaggagtc tctgcgaggg 4560 ttttggaaga aacactccgg tgagcccggc actcttctat ggaatactgt ctggaatatg 4620 gccgttatta cccactgtta tgacttccgc gatttgcagg tggctgcctt taaaggtgat 4680 gattcgattg tgctttgcag tgagtatcgt cagagtccag gagctgctgt cctgatcgcc 4740 ggctgtggct tgaagttgaa ggtggatttc cgcccgatcg gtttgtatgc aggtgttgtg 4800 gtggcccccg gtcttggcgc gcttcctgat gttgtgcgct tcgccggccg gcttactgag 4860 aagaattggg gccccggccc tgagcgggcg gagcagctcc gcctcgctgt tagtgatttc 4920 ctccgtaagc ttacgaatgt cgctcagatg tgtgtggatg ttgtttcccg tgtttacggg 4980 gtttcccctg ggctcgttca taacctgatt ggtatgctac aggctgtcgc tgacggcaag 5040 gcacatttca ctgagtcagt aaaaccagtg ctcgacctga caaattcaat ttggtgtcgg 5100 gtggaatgaa taacatgtct tttgctgcgc ccacgggttc gcgatcatgc gccctcggcc 5160 tattttgttg ctgttcctca tgtttctgcc tatgctgccc gcgccaccgc ccggtcagcc 5220 gtctggccgc cgtcgtgggc ggcgcagcgg cggttccggc ggtggtttct ggggtgaccg 5280 ggttgattct cagcccttcg caatccccta tattcatcca accaacccct tcgcccccga 5340 tgtcaccgct gcggccgggg ctggacctcg tgttcgccaa cccgcccgac cactcggctc 5400 cgcttggcgt gaccaggccc agcgccccgc cgctacctca cgtcgtagac ctaccacagc 5460 tggggccgcg ccgctaaccg cggtcgctcc ggcccatgac accccgccgg tgcctgatgt 5520 cggctcccgc ggcgccatct tgtgccggca gtacaaccta tcaacatctc cccttacctc 5580 ttccgtggcc actggcacta acctggttct ttatgccgcc cctcttagtc cgctcttacc 5640 cctccaggac ggtaccaata ctcatataat ggccacggaa gcttctaatt atgcccagta 5700 ccgggttgcc cgtgccgcga tccgttaccg cccgttggtt cccaacgctg tcggcggtta 5760 cgccatctcc atctcattct ggccacagac caccaccacc ccgacgtccg ttgatatgaa 5820 ttcaataacc tcgacggatg ttcgtattct agtccagccc ggcatagcct ctgagcttgt 5880 gatcccaagc gagcgcctac actaccgtaa ccaaggttgg cgctccgtcg agacctccgg 5940 ggtggctgag gaggaggcca cctctggtct tgttatgctt tgcatacatg gctcacccgt 6000 aaattcctat actaatacac cttataccgg tgccctcggg ctgctggact ttgcccttga 6060 gcttgagttt cgcaacctta cccccggtaa cactaatacg cgggtctccc gttattccag 6120 cactgctcgc caccgccttc gtcgcggtgc ggatgggact gccgagctca ccaccacggc 6180 tgctacccgc tttatgaagg acctctattt tactagtact aatggtgttg gtgagatcgg 6240 ccgcgggata gccctcaccc tgttcaacct tgctgacact ctgcttggcg gcctgccgac 6300 agaattgatt tcgtcggctg gtggccagct gttctactcc cgtcccgttg tctcagccaa 6360 tggcgagccg actgttaagc tgtatacatc tgtagagaat gctcagcagg ataagggtat 6420 cgcaatcccg catgatattg acctcggaga atctcgtgtg gttattcagg attatgataa 6480 ccaacatgaa caagaccggc cgacaccttc tccagccccg tcgcgccctt tctctgttct 6540 tcgagctaat gatgtgcttt ggctctctct caccgctgcc gagtatgacc agtccaccta 6600 tggctcttcg actggcccag tttatgtttc tgactctgtg accttggtta atgttgcgac 6660 cggcgcgcag gccgttgccc ggtcgctcga ttggaccaag gtcacacttg atggccgccc 6720 tctctccacc atccagcagt actcgaagac cttctttgtc ctgccgctcc gcggaaagct 6780 ctctttctgg gaggcaggca caactaaggc cgggtaccct tataattaca acaccactgc 6840 tagcggccaa ctgcttgtcg agaatgccgc cgggcaccgg gttgctatct ccacttacac 6900 cactagcctg ggtgctggcc ccgtctccat ttctgcggtt gccgtcttgg ccccccactc 6960 tgcgctagca ttgcttgagg ataccttgga ttaccctgcc cgcgcccata cttttgatga 7020 tttctgccca gagtgccgcc cccttggcct ccagggctgc gctttccagt ctactgtcgc 7080 tgagctccag cgccttaaga tgaaggtggg taaaactcgg gagttatagt ttatttgctt 7140 gtgcccccct tctctctgtt gcttatttct cttttctgcg ttccgcgctc cctgaaaaa 7199 //