Dbfetch
ID AF039529; SV 1; circular; genomic DNA; STD; VRL; 2707 BP. XX AC AF039529; XX DT 29-DEC-1998 (Rel. 58, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 4) XX DE Sugarcane streak Egypt virus - [Ben], complete genome. XX KW . XX OS Sugarcane streak Egypt virus - [Ben] OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2707 RX DOI; 10.1007/s007050050647. RX PUBMED; 10664387. RA Bigarre L., Salah M., Granier M., Frutos R., Thouvenel J., Peterschmitt M.; RT "Nucleotide sequence evidence for three distinct sugarcane streak RT mastreviruses"; RL Arch. Virol. 144(12):2331-2344(1999). XX RN [2] RP 1-2707 RA Bigarre L., Salah M., Granier M., Nicole M., Peterschmitt M., RA Thouvenel J.C.; RT ; RL Submitted (22-DEC-1997) to the INSDC. RL CA-phyma, CIRAD, BP 5035, Montpellier 34080, France XX DR MD5; bcf634a861d5e84db2a1b214c76a9014. DR EuropePMC; PMC1262190; 16244707. XX FH Key Location/Qualifiers FH FT source 1..2707 FT /organism="Sugarcane streak Egypt virus - [Ben]" FT /strain="Beni-Suef" FT /mol_type="genomic DNA" FT /db_xref="taxon:268784" FT misc_feature join(2557..2707,1..131) FT /note="long intergenic region (LIR)" FT gene 132..449 FT /gene="V1" FT CDS 132..449 FT /codon_start=1 FT /gene="V1" FT /product="putative movement protein" FT /note="MP" FT /db_xref="GOA:Q9YXD8" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:Q9YXD8" FT /protein_id="AAC98080.1" FT /translation="MDGSGGALPALPQSVLPRVPSPPPSAGVLPWSRVGEILIFTFVAL FT VALYLLWLWVLRDLIFLVKARRGISTEEVSFGTSDLVGSQAPTPVGVSASCPPGPVPFT FT A" FT gene 466..1209 FT /gene="V2" FT /note="synonym: CP" FT CDS 466..1209 FT /codon_start=1 FT /gene="V2" FT /product="coat protein" FT /db_xref="GOA:Q9YXD7" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:Q9YXD7" FT /protein_id="AAC98081.1" FT /translation="MPLAGSKRKRADEVAWSKRGTKKKPERTSAARAGPSRRIRPPLQI FT ATFVAAGQSLVSVPSGGVCELLGSYARGADEANRHTNETVTYKVALDYHFVATAAACKY FT SSIGTGVAWLVYDAQPTGNTPTTKDIFGYSDSLVAFPYTWKVSREVCHRFVVKRRCTFT FT METDGRIGSDVPPANTSWSPCKRAIYFHKFFTGLGVKTEWKNLTDGGVGAIKKGALYLV FT IAPGNGLEFTCHGQARLYFKSVGNQ" FT misc_feature 1208..1405 FT /note="small intergenic region (SIR)" FT gene complement(1406..>1816) FT /gene="C2" FT CDS complement(1409..>1816) FT /codon_start=1 FT /gene="C2" FT /product="RepB" FT /db_xref="UniProtKB/TrEMBL:Q77Y11" FT /protein_id="AAC98083.1" FT /translation="RIQNIPGHRKQSLYILGPTRTGKSTWARSLGRHNYWQNNVDWSSY FT DEEAVYNIIDDIPFKFCPCWKQLVGCQKEYVVNPKYGKKKKVASRSIPSIILANEDEDW FT LTVMTPGQREYFEANAVIYIMTAGEKFYKPA" FT gene complement(1726..2556) FT /gene="C1" FT CDS complement(1726..2556) FT /codon_start=1 FT /gene="C1" FT /product="RepA" FT /db_xref="GOA:Q9YXD6" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q9YXD6" FT /protein_id="AAC98082.1" FT /translation="MTTVGSTESGSASRSFKHRNVNTFLTYSKCHLDPEAVGLHLWSLI FT GHWNPAYIVVSREAHADGSWHIHALAQSVKPVQTTNPRFFDIEDFHPNIQSAKSADRVK FT EYVLKNPIKQWEKGTFIPRKKSFATTSSEDRQPKPTKDDIVRDIIEHSTSKQEYLSMLQ FT KALPYEWATKLQYFEYSASRLFPETAEVYTNPHPPTEPDLVNFETIEDWLNPNIYQVSP FT EAYMLLTPTCLTLEEAISDLEWMQSASRTSQGTGNSLCTSWGQQEQGNQPGPEA" XX SQ Sequence 2707 BP; 561 A; 659 C; 761 G; 726 T; 0 other; accgcgctct ctcatgcgag gcccaccagg ccgagcggtc ctgctttggg gccctatgtc 60 tttcgttaaa gcctgtatgt aattaggcgc tttggatcgc atataagttc gtgcccaggc 120 tcagtggtgc tatggacggc tctggaggag cgttgcctgc tttgcctcaa agtgttctgc 180 cgcgggtacc ctcgccacct ccgtctgccg gagtgctgcc gtggagtcgc gtcggtgaga 240 tattgatttt cacctttgtt gctttggtag ctctgtacct gttatggttg tgggtgctga 300 gagatcttat cttccttgtt aaggctcgcc gcgggatctc aacggaggag gtgagctttg 360 gtacgtcaga tctggttggt tcgcaggctc caacgccggt cggtgtctct gctagctgtc 420 cgccgggacc tgtgccgttc acggcctagg tagccctcag ccaccatgcc tcttgccggc 480 agcaaaagga agagggccga tgaggtggcc tggtctaagc gtggcactaa gaagaagcct 540 gagcgtacat ctgccgctcg ggctggtccg tctaggcgga ttcgtccacc cctgcagata 600 gccacgtttg tggcagccgg tcagtctctg gtgtctgtcc cttccggtgg tgtttgtgaa 660 ctgctgggct cctatgctcg aggcgctgac gaggccaacc gtcacaccaa cgagactgtc 720 acgtacaagg ttgccttgga ctaccacttc gttgctactg cagccgcctg caagtattct 780 agcattggca ctggcgtggc ctggttggtg tatgatgcac agcctaccgg aaataccccg 840 acgacgaagg acatcttcgg ctatagtgac tcccttgtgg cgttccccta cacatggaag 900 gtttcaaggg aggtgtgtca tcgcttcgtg gtgaagagga gatgcacttt cacgatggag 960 accgacggtc ggattgggtc ggatgttcct ccggcgaata cctcatggtc gccttgtaag 1020 cgggcgattt acttccataa gttcttcacc ggcctgggtg tgaagacgga gtggaagaat 1080 ctcacagacg gtggtgtggg agcgattaag aagggtgcgt tgtacctggt cattgcccct 1140 ggcaacggtc tagagtttac ctgccatggg caggcccgtc tgtacttcaa atcagttggg 1200 aatcagtgat tccctacaga ataataaaac aagttttata attccattga tattggacgc 1260 agtacaatac agaatacaat gtctgcagat gtgcagacga caacattaaa ctggttttgt 1320 gtgtcgcgag ggggaacccg gagcacgctc ccaaaacacc caacacacac acacccaact 1380 gaagtttatt gaacatgcag ccgccggcct aagcaggctt gtagaacttc tcgcctgctg 1440 tcataatgta tatgaccgcg tttgcctcga agtactcccg ctgtccggga gtcatgaccg 1500 tcagccagtc ctcatcctcg ttggctagga ttattgatgg aatgctcctg gaagctacct 1560 tcttcttctt accgtacttc gggttgacga cgtactcttt ctggcagcca accagctgct 1620 tccagcaagg acagaacttg aaggggatat catctatgat gttgtagact gcttcctcat 1680 cataggaaga ccagtccaca ttattctgcc agtagttgtg gcgccctagg cttctggccc 1740 aggttgattt ccctgttctt gttggcccca ggatgtacag agactgtttc ctgtgccctg 1800 ggatgttctg gatgcggatt gcatccattc taagtcagag attgcttcct caagggttaa 1860 gcaggtagga gtaagcagca tgtaggcttc tggactaacc tgatagatgt tggggttgag 1920 ccaatcttct atggtttcga agtttacgag gtccggttca gtgggaggat gaggattggt 1980 gtatacttct gcagtttcag ggaacaatct ggaggctgag tactcaaagt actggagctt 2040 cgttgcccac tcgtagggga gtgccttctg aagcattgaa aggtactctt gcttggaggt 2100 ggagtgttcg atgatatctc tcacgatatc atcttttgtg ggtttaggtt gcctatcctc 2160 agatgaagtg gtagcaaatg atttcttgcg tgggatgaaa gtacctttct cccactgttt 2220 gatcgggttt ttgagcacgt attccttgac cctgtctgcg gacttggcac tctgaatgtt 2280 aggatggaaa tcctcaatgt caaagaacct agggttcgta gtttgcacag gcttgacgct 2340 ctgagctaag gcatggatat gccaggatcc atcagcatga gcttcccggc tcacgacgat 2400 gtacgctgga ttccagtgac ctatgagact ccagagatgg agcccaacag cttcagggtc 2460 tagatggcac ttggaatatg tgaggaatgt gtttacgttc ctgtgcttga aggaacggct 2520 ggcagagcct gactctgttg atcctacggt tgtcatggct gggcgagagg tctgattctg 2580 agtctcaact aactctccta caggtttgcg aatcgaaatc cgacctcccg tcttatatag 2640 gagcttagtt gggccgggcc ggaaattttt tctgggccgc aatgagagag cgcaaaccga 2700 taatatt 2707 //