Dbfetch
ID AF039080; SV 1; linear; genomic RNA; STD; VRL; 5202 BP. XX AC AF039080; XX DT 31-OCT-1998 (Rel. 57, Created) DT 03-FEB-1999 (Rel. 58, Last updated, Version 2) XX DE Sphaeropsis sapinea RNA virus 2, complete genome. XX KW . XX OS Sphaeropsis sapinea RNA virus 2 OC Viruses; Riboviria; Totiviridae; Victorivirus. XX RN [1] RP 1-5202 RX DOI; 10.1006/viro.1998.9480. RX PUBMED; 9878619. RA Preisig O., Wingfield B.D., Wingfield M.J.; RT "Coinfection of a fungal pathogen by two distinct double-stranded RNA RT viruses"; RL Virology 252(2):399-406(1998). XX RN [2] RP 1-5202 RA Preisig O., Wingfield B.D., Wingfield M.J.; RT ; RL Submitted (17-DEC-1997) to the INSDC. RL Genetics, University of Pretoria, Hill Crest, Pretoria 0001, South Africa XX DR MD5; fa48dadf7f5cc0f646f21e0f37532cba. DR EuropePMC; PMC3597494; 23516364. DR EuropePMC; PMC3659425; 20976609. XX FH Key Location/Qualifiers FH FT source 1..5202 FT /organism="Sphaeropsis sapinea RNA virus 2" FT /mol_type="genomic RNA" FT /db_xref="taxon:73498" FT CDS 296..2665 FT /codon_start=1 FT /product="coat protein" FT /note="ORF1" FT /db_xref="GOA:Q9YXE5" FT /db_xref="InterPro:IPR008871" FT /db_xref="UniProtKB/TrEMBL:Q9YXE5" FT /protein_id="AAD11602.1" FT /translation="MAEAPASHHRYPAPLVGTLADPQGGGLAADNQFRRYRAALRIRAP FT DRGNYLTSTRSIFYEVGRRYGSGGDALAPPPEAAMRIDCSVPINPAEAANFEGLARRFS FT NFSPQWEMMDLAAIAERLAKGVAAASVYGQGLDTQALRAGQPIRVVALGTLDSPQTAST FT ASVFIPRTVDAVSNDHVFAVLCAAANGAGAAVTTDVLRLDANTNQPIVPAVTGAAFTTA FT CVEALRMVGANMEASGAGDVFAYAVTRAIHSIVSVVAHTDEGGIMRGLLRHDAFRVPYG FT GINQALRQYPGLPPLASVAQSAVSAWVDAIALKTAAVVAHCDPLVPGAGGLFPTVFVSR FT GDVPAAPGTAEGDITDAQALSVARQMAADLGRFAPMYMRALTMIFGLRSNSAIAEQHFC FT TAGARYLDQDGHRIDRHLRHGTVAPYFWVEPTSLIPHDFLGTAAEAADYAAKCSPMGGV FT RSQPLFEEHRILGHGATANHMSLAFKMRSARTSAFVAAYAASPSVLGNFRLYQFDSASV FT VLPGDQGPTNGTVADKHAAADPLSSYLWVRGQSAIPAPAEFMNTQSAYGAKVRLIKWDD FT DWDATRTDAPDEMDFQGSIDWAVTVPTGLAIGASNAPDRAAKRARTRAATALAQVLQQM FT RGAGPASSPVMEISDVPPDFGGAREEYRNTNNNVFAGNPGAGVIGGEAGAVAPQVPAHR FT GPPLGPTTHHQALRAPQLPRPGQAGAGGGGAAPPPLPPLVATPFPFFRRPPEETMTALA FT ARPLPFRLPLTRSPSPTTPLPLKAPTVKYRRRPRNE" FT CDS 2658..5135 FT /codon_start=1 FT /product="RNA dependent RNA polymerase" FT /note="ORF2" FT /db_xref="GOA:Q9YXE4" FT /db_xref="InterPro:IPR001795" FT /db_xref="UniProtKB/TrEMBL:Q9YXE4" FT /protein_id="AAD11603.1" FT /translation="MSNDRLHSRVEATGPVGVYLRSLVPLELAAVVSRLPFDRQISFIY FT SPQWQGRRPTGIQRLAGAFLLPQVPVQVSVTDADLLLLLTNTLPPAFPKRIHRQAGWSY FT SDRATLAEFGLKSNPAASNKVNVYLCEVMRSLSDYSTSWAWLAEDALSRAPPMFNDQAS FT ALVLYGTALQAKGVQNGYHAATALIANPEYAKDMTTVLKAVGANSNHLGACLVEAQTLQ FT GRAVQPADMHSEAISRTTTAVADIVVDYPDDVLRSHIRTVLEREIQRVGDSHAIEYPTL FT QEHWDSRWLWAVNGSQSGLLSREHLEAAPRPPGAAREYRAVMARESEQDPRPAWDGHTY FT VSGSPKLEHGKTRAIFACDTLNYLAFEHLLASVESRWRGERVVLNPGRGGNVGMSFRVA FT AARQRAGISLMLDYDDFNSHHSIRAMQILFEETAALTHYPPELAAKLVASFENMDLYLG FT SSCIGRVLGTLMSGRRGTTYISSVLNEVYLAIELGASWLAERPSIHVGDDVYLGVRTYR FT DAAYVLDKCATSRLRMNPMKQSVGHTSTEFLRLACAGRATYGYLARAVASTISGNWVTE FT EALDPYDGLTSMLTNARSLANRASSPFLPLLLRRSVQRITKLPRPDHKKIDQLLTGQLA FT LENGPMFSQGAEYVWVDASSVQPPPDEWGYQDLPLAATTQFLSRCAQPLEVKYLTEAGI FT GLTAVMAEASYRKTFSSTFSRSDRVILGPVRRRPVAGTASVERLLNTRPPEGCLEKYPL FT LRLARRRLPRSVLQRAIAEAGGNPDAADLDLEAWGEHNHGCVVATPLSYADAATYGRRT FT TCGVLVCGLHFYV" XX SQ Sequence 5202 BP; 923 A; 1770 C; 1508 G; 1001 T; 0 other; ccagggaccc ctgcagcccc ctgtttgtca gcgcctgtaa tagggtacta cattgctgca 60 ggctggtagc gtgagcggtc ggtaacactt ccgttctcca cgccagagtt gcccctcgtg 120 ggcgtgtctg ccggaagggc tgaaaagtat ccggccggta gctcgccccc gcgcatgtgc 180 ccgaataggg attgggtgcg cggttgaggg tctggtgtcg taatggggcg aggagggttc 240 cgaagatcca aaccattaca cacctgcaac tctgattacc atcaccacta gcgccatggc 300 tgaagctccc gcttcccacc atcgttaccc cgccccttta gtgggcactc tagccgaccc 360 gcaaggcggg ggtctggctg ctgacaacca gttccgccga taccgtgccg cgctccgcat 420 ccgtgctccg gaccgtggta actacctcac gagcacgcgt tcgatcttct acgaagtcgg 480 acgacgctac ggcagcggcg gcgatgccct tgcccctcct ccggaggcgg ctatgcgcat 540 cgactgttcg gtgccgatca atccggcgga ggccgccaac tttgagggcc tcgcacgtcg 600 gttctccaac ttctccccgc aatgggagat gatggacctc gctgccatcg ccgagcgatt 660 ggctaaaggt gtcgcggccg cgtccgttta cggacaaggc ttagacacgc aggcgctgcg 720 cgcggggcag cccattcgcg tggtcgctct ggggactctt gactcgcccc agacggcgtc 780 gaccgcgtcc gtgttcatac cgcggacggt cgacgctgtg tcgaacgacc acgtcttcgc 840 agtcctatgc gccgccgcca acggtgctgg ggctgcggta accaccgacg tcctcaggct 900 ggatgccaat actaaccagc cgatagtgcc cgccgtcacc ggggccgcct tcaccactgc 960 ttgtgttgag gccctccgca tggtcggcgc aaacatggag gcgtcgggcg caggcgatgt 1020 tttcgcctac gccgtcacca gggctatcca cagcatcgtg agcgtggtgg cccacaccga 1080 cgagggcggt atcatgcgcg ggcttctccg ccatgatgct ttccgcgtcc cgtacggagg 1140 gatcaaccaa gccctccgtc aataccctgg ccttccgccg ctcgcgtcgg tggcccagag 1200 tgctgttagc gcctgggtcg acgcgatcgc actgaagacc gcggccgtgg tcgcccactg 1260 cgaccccctc gtccccggcg ccggcgggct gttcccaaca gtcttcgtca gccgtggtga 1320 cgtgcccgct gcgccaggta cagccgaggg cgacatcacg gacgcccagg ccctctcggt 1380 cgcgcggcag atggccgccg acctaggtcg gttcgcgccg atgtacatgc gggccctgac 1440 catgatcttc ggattgcggt cgaacagcgc catcgctgag cagcacttct gcacagcggg 1500 ggcccgctat cttgaccagg acggtcaccg catcgaccgt cacctccgtc atgggaccgt 1560 cgcgccctac ttctgggtcg agccgacgtc cctcatcccc catgacttct tggggacagc 1620 tgcagaagcg gctgattacg cggctaagtg ctcccctatg ggtggagttc ggtcgcaacc 1680 cttgttcgag gaacaccgca tcctcggaca tggcgccact gccaaccaca tgtcgttggc 1740 tttcaagatg cgctctgcac gtacgagcgc gttcgtggca gcctacgcag cgagcccgtc 1800 agttctcggt aacttcaggc tctaccagtt cgactcggct tcggtcgtcc tccccggcga 1860 ccagggccct acgaacggta ccgtggctga caaacacgcg gccgccgacc ctttgtcctc 1920 gtacctctgg gtgcgaggcc agtcggccat cccagccccg gctgagttta tgaacactca 1980 gtcggcctac ggcgccaagg tccgtctcat caagtgggac gacgactggg atgctacgcg 2040 tacggacgcg cccgatgaaa tggacttcca ggggtccatc gattgggccg tcacggtacc 2100 gaccggcctg gctattgggg ccagtaacgc gccggaccgt gcagctaagc gtgcacgcac 2160 ccgcgctgcg accgcacttg cccaagtgct gcagcagatg cgcggtgccg ggccggcttc 2220 atcgccggtc atggagatat cggatgtccc acctgatttc ggtggggcac gggaggaata 2280 ccgcaacacg aacaataacg tgtttgcggg caaccctggg gcgggtgtca tcggtgggga 2340 agccggtgcg gtcgcccctc aggtaccagc ccaccgtggt ccgcccctcg ggccgaccac 2400 gcaccaccag gcgctccgtg cgccccaact gccacgcccg ggccaggctg gcgctggtgg 2460 tggcggtgcc gcccctcctc ccctcccccc cctggtggca acccccttcc ccttcttccg 2520 ccgccccccg gaggaaacaa tgacggccct ggcggcccgc cccctcccgt tccgcctccc 2580 gttgacccgg tccccatccc ccacaacccc cctgccgctg aaggcgccga cggtaaagta 2640 ccgccggcgc ccccgcaatg agtaacgaca gactccactc gcgggtagag gccacaggtc 2700 ccgtgggtgt gtatttacga tcgcttgtgc ctctagaatt agcggcggtt gtctcccgtt 2760 tgccgttcga tcggcagatt tctttcattt atagccctca gtggcaaggc cggcggccca 2820 ccggcataca gcgtttagca ggcgccttcc tgctaccaca ggtccccgtt caggtgtcag 2880 taactgacgc ggacctcctc cttctactga ctaacactct cccccccgcc tttccgaagc 2940 ggatccaccg ccaggcgggg tggtcataca gcgaccgtgc taccctcgca gagttcggat 3000 tgaaatccaa cccagccgcc tctaataagg taaatgtgta cctttgcgag gtcatgcggt 3060 cactttctga ctactcgacg agttgggctt ggctcgccga ggacgccctt tcacgcgcac 3120 cgccgatgtt taatgatcag gcgagcgcgc tagtactata tggtacggcc ctccaggcaa 3180 agggcgtgca gaacggttac cacgccgcaa ctgcactaat tgccaacccg gaatacgcaa 3240 aagatatgac tacggtgctc aaggccgtag gcgcgaattc caaccacctc ggtgcctgcc 3300 tcgtcgaagc tcagacgttg caggggcgtg ccgtccaacc ggccgacatg cactccgagg 3360 ccatctccag gactacgact gccgttgctg acatcgtggt cgactatcca gatgatgtcc 3420 ttcgttcaca catccggact gtccttgagc gtgagatcca acgagtcggc gactcccacg 3480 ccatcgagta cccaacctta caagaacatt gggactctcg atggctctgg gcagtcaacg 3540 gctcacaatc cgggttgctc tctcgcgagc atctcgaagc tgccccccga ccgccggggg 3600 ccgcgcgcga atacagggcg gtcatggctc gagagagtga gcaagacccc cggccagctt 3660 gggacgggca cacgtatgtg tccggttctc ccaaactgga gcatgggaaa acccgggcta 3720 tcttcgcttg tgacactctc aactacttgg cgttcgaaca cttactcgcg agcgtcgagt 3780 cccgttggcg cggtgagcgc gtcgtcctca accctggccg aggtggtaac gtcggaatgt 3840 cattccgcgt cgccgccgca cgccagcgtg ccggcatctc tttgatgctg gattacgatg 3900 acttcaactc ccaccactca atccgcgcca tgcaaatact cttcgaggag actgcggcat 3960 taacccacta cccgcctgag ctcgcggcta agcttgtagc ctccttcgaa aatatggacc 4020 tgtacttagg gtcctcctgt atcggccgcg tccttgggac gctcatgtct ggacgccgcg 4080 ggacgactta catcagctcc gtcctgaacg aggtctacct cgccatcgag ctaggagcct 4140 cttggttagc tgagcgcccg tcaatccatg taggtgacga cgtctacctt ggcgtccgca 4200 cttaccgaga cgcggcttac gtactcgaca agtgcgccac gtcacgccta cgcatgaacc 4260 cgatgaaaca gtccgtcgga cacacgtcga cggagttcct gcgtctagcg tgcgccggtc 4320 gcgcaaccta cggctatctc gcccgggccg tagcatcaac tatttcgggc aactgggtaa 4380 cggaggaggc cttagacccc tatgacgggc tcacctccat gctcacgaac gcgcggtcct 4440 tggctaaccg cgccagctct cccttcttgc ctctgctctt gcgtcgtagc gtccagcgaa 4500 tcactaagct accacggccg gaccacaaga agatcgacca gctgcttact ggccagcttg 4560 ccctcgagaa cgggcctatg ttctcacaag gtgctgagta cgtatgggta gacgcgagct 4620 cagtacagcc ccctcccgac gagtgggggt atcaagacct acccttagct gcaacgacac 4680 agttcttaag ccgttgcgcc caaccgctcg aggtcaagta cctcactgaa gcggggattg 4740 gccttactgc cgtgatggcg gaggcgagtt accgtaagac gttctcgtcc acgttctccc 4800 gtagtgaccg cgtgatcctc ggcccagtga ggcgcagacc tgtggctggg acggcttccg 4860 ttgagcggct cctcaacacg cgcccgccgg aagggtgcct tgaaaagtac ccactcctcc 4920 gcctcgcccg caggaggttg ccgagatctg tactacagcg ggctatcgcc gaggcaggtg 4980 gcaatccgga cgccgccgac ctcgatctcg aagcatgggg ggaacacaac catggttgtg 5040 ttgtcgccac cccccttagc tacgccgacg ccgctactta cggtcggcgg acaacatgcg 5100 gcgtgttagt gtgtggttta cacttctacg tctaaaggtg acacctaacc ttactcgcgc 5160 ggggcgcgag tccacagcgg gggcctacgg gccccaaatg cc 5202 //