ID AF036710; SV 1; linear; genomic DNA; STD; VRL; 4936 BP. XX AC AF036710; XX DT 09-APR-1998 (Rel. 55, Created) DT 09-APR-1998 (Rel. 55, Last updated, Version 1) XX DE Rat parvovirus 1a nonstructural protein (NS1) and nonstructural protein DE (NS2) genes, complete cds. XX KW . XX OS Rat parvovirus 1 OC Viruses; Parvoviridae; Parvovirinae; Protoparvovirus. XX RN [1] RP 1-4936 RX PUBMED; 9525656. RA Ball-Goodrich L.J., Leland S.E., Johnson E.A., Paturzo F.X., Jacoby R.O.; RT "Rat parvovirus type 1: the prototype for a new rodent parvovirus RT serogroup"; RL J. Virol. 72(4):3289-3299(1998). XX RN [2] RP 1-4936 RA Ball-Goodrich L.J., Leland S.E.; RT ; RL Submitted (02-DEC-1997) to the INSDC. RL Comparative Medicine, Yale School of Medicine, P.O. Box 208016, New Haven, RL CT 06520-8016, USA XX DR MD5; 2d9412b2a4bac368c15cd22b367a5f7c. DR EuropePMC; PMC109804; 9525656. DR EuropePMC; PMC115897; 11222696. XX FH Key Location/Qualifiers FH FT source 1..4936 FT /organism="Rat parvovirus 1" FT /mol_type="genomic DNA" FT /db_xref="taxon:74581" FT CDS join(254..507,1983..2270,2364..2385) FT /codon_start=1 FT /gene="NS2" FT /product="nonstructural protein" FT /note="early viral protein; putative major carboxy terminal FT form" FT /db_xref="UniProtKB/TrEMBL:O71156" FT /protein_id="AAC40694.1" FT /translation="MAGNQYSEEVLDGVNWLKDQSDTEAFSFVFKCENVQLNGKDINWN FT NYNKPLNNEELTSLIRGAETAMDQAEDMEWESELDQLTKKFGTLNISNGNQYSSEPELR FT SHSSCFGPSGPRSGALEHSKYTCGGTCDRFEHQHWWKKLSNCSSEPNLVRDRSRLESLL FT QSRTVGERLQRGADLGLRYSITWF" FT CDS 254..2269 FT /codon_start=1 FT /gene="NS1" FT /product="nonstructural protein" FT /function="viral replication" FT /function="transcription" FT /function="cellular cytotoxicity" FT /note="early viral protein" FT /db_xref="GOA:O71157" FT /db_xref="InterPro:IPR001257" FT /db_xref="InterPro:IPR014015" FT /db_xref="InterPro:IPR021076" FT /db_xref="InterPro:IPR021972" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:O71157" FT /protein_id="AAC40693.1" FT /translation="MAGNQYSEEVLDGVNWLKDQSDTEAFSFVFKCENVQLNGKDINWN FT NYNKPLNNEELTSLIRGAETAMDQAEDMEWESELDQLTKKQVQIFDALVKKCLFEVILN FT KNVAPNDCGWFIQHEWGKDQGWHCHVLLHGKGLQQAMGKWFRRQMNVLWSRWLVTACSV FT NLSPAERIKLREIAEDSEWVTVLTYRHKQTKKDYVKLVHFGNMIAYYFMTKKKIASSPP FT RDSGYFLSTDSGWKFNFMKEADRHLVSTLYTDQMKPETVETTVTTAQETKRGRIQTKKE FT VSIKCTLRDLVAKRVTSPEDWMMQQPDSYIEMMAQPGGENLLKNTLEICTLTLARTKTA FT FDLILEKAEPSKLTTFVLGDTRTCRIFAGHGWNYIKVCHAIACVLNRQGGKRNTVLFHG FT PASTGKSIIAQAIAQAVGNVGCYNAANVNFPFNDCTNKNLIWVEEAGNFGQQVNQFKAI FT CSGQTIRIDQKGKGSKQIEPTPVIMTTNENITVVRIGCEERPEHTQPIRDRMLNIHLTN FT TLPGDFGLVEKQEWPLICAWLVKNGYQSTMASYSHHWGKVPDWSENWAEPAMQTPINSI FT GSARSTSQTATSTPLSQNYALTPLASDLADLALEPWSTPNTPVAEPVTGSNTNTGGRNS FT QTARASPTWSEIEADLRACFSQEQLESDFNEELTLD" XX SQ Sequence 4936 BP; 1550 A; 1026 C; 1123 G; 1230 T; 7 other; atcatctttt agaactaacc aaccatgttc acgtatgtga cgtgatgacg cgcgctnnnn 60 nnnctgcctt cggcagtcac acgtcacaaa cgtttcacat ggttggttag ttctaaaaga 120 tgataagcgg ttcagggttt aaaccagagg cgggaaacca cagagggcgt ggctaaatgt 180 atataaagac aagtcagtgt cagttacact cactctctct ttgcagacag agataccgga 240 gctctttagc accatggcag gcaaccagta ttccgaggaa gttctggatg gagtcaattg 300 gttgaaagac caatctgaca cagaagcatt ctcctttgtt tttaaatgtg agaatgtaca 360 actgaatggt aaagatatta actggaacaa ctacaacaaa cctctcaaca acgaggagct 420 gacttctctc atcagagggg ctgaaacagc aatggaccag gcagaagata tggaatggga 480 atctgaactc gatcaactca ccaaaaagca agtacaaata tttgatgctt tggttaagaa 540 atgtctattt gaagtaatac ttaacaagaa tgtagcacct aatgactgtg gttggtttat 600 ccaacatgaa tggggaaaag atcaaggctg gcactgtcat gtactgttgc acggtaaagg 660 actgcaacaa gcaatgggca aatggttcag aaggcagatg aatgtacttt ggagcagatg 720 gttggtgact gcttgttcag ttaacctttc accagcagaa agaattaaac tgagagaaat 780 tgcagaagac agtgaatggg taacagtgct tacttataga cataaacaga ccaagaaaga 840 ttatgtgaaa ttggttcact ttggaaacat gattgcctat tacttcatga caaaaaagaa 900 aatagctagt tctcctccaa gagactctgg ctactttctc agcactgact ctggctggaa 960 atttaacttt atgaaagagg cagacagaca cttggtcagt acactttata ctgatcaaat 1020 gaagccagaa acagttgaga ccacagtaac cacagcacag gaaactaagc gcggcagaat 1080 tcaaactaag aaggaggtgt caatcaaatg cacgctgcgc gacctagtgg ccaaaagagt 1140 tacttcaccg gaagattgga tgatgcaaca gccagacagt tacatagaaa tgatggctca 1200 acctggtgga gaaaacttgc tgaaaaacac tctagaaatt tgtactctaa ctttggccag 1260 aacaaaaact gcttttgatc taatacttga aaaagcagaa ccaagcaaac taactacttt 1320 tgtacttgga gacacacgca catgtagaat ttttgctggt catggatgga actatattaa 1380 agtgtgtcat gccattgctt gtgtactgaa cagacaagga ggcaaacgaa atacagtgct 1440 ttttcatggg cctgccagca caggaaagtc aattattgct caagcaatag cacaagcagt 1500 tggtaatgtt ggttgttaca atgctgccaa tgtgaacttt ccatttaatg actgtaccaa 1560 caaaaacttg atctgggttg aagaagctgg taattttggt caacaagtta atcaatttaa 1620 agccatctgt tcaggccaga ctatcagaat tgaccaaaag ggaaaaggca gcaaacagat 1680 tgaaccaaca ccggttataa tgaccaccaa tgaaaacata acagtggtta gaattggatg 1740 tgaagaaaga cctgaacaca cacagccaat cagagataga atgttgaata ttcatcttac 1800 caacacattg cctggtgact ttggtttggt tgaaaagcaa gaatggcctt tgatctgtgc 1860 atggttggtg aaaaatggtt accaatcaac catggcaagt tactctcatc actggggcaa 1920 agtgcctgac tggtcggaga actgggcgga gccagcgatg caaacgccta taaattcaat 1980 aggttcggca cgctcaacat ctcaaacggc aaccagtact cctctgagcc agaactacgc 2040 tctcactcct cttgcttcgg acctagcgga cctcgctctg gagccttgga gcactccaaa 2100 tacacctgtg gcggaacctg tgacaggttc gaacaccaac actggtggaa gaaactctca 2160 aactgctcga gcgagcccaa cttggtcaga gatagaagca gacttgagag cttgcttcag 2220 tcaagaacag ttggagagcg acttcaacga ggagctgacc ttggactaag gtacgatggc 2280 acctccggcg aagagagcca ggagaggtaa gggtggttgg gttgggtaag gcatgggtta 2340 ctaaacttat atgtatatta caggtattct attacttggt tttaggttgg gtacctccgg 2400 gatacaagta cctgggacct ggtaacgacc ttgaccaagg agaaccaact aacccttctg 2460 acgccgctgc aaaagaacac gacgaggctt acagcaaata ccaagcttct ggcaagaatc 2520 cttacctgta cttctctcct gctgatcagc gcttcattga ccaaactcaa gacgccaaag 2580 actggggtgg tcgaattggt cactacttct tcagagctaa gaaagcaatt gctccaactc 2640 tcactgactc tgctggtaaa tctggacctt ctggtgtagc tagacctggt aagaggagca 2700 agcctcctgc acatattttt gtgaaccttg ctaaggctaa aaaaaaacgt gcttctcttg 2760 ctgcacagca gagaactcag actatgagtg atggaggcga acagcaacag gacaatgctg 2820 cacagtcagc tgctagagtt gagagagcag ctgacggcag tggaggctct ggtggtggtg 2880 gtggtggtgg taatggtggt gttggggttt ctacggggag ctttgataac caaacgcact 2940 atgacttcct tggagggggg tgggtccgta tcacagcgta tgcttcgcga cttgttcata 3000 taaatatgcc tgcttctgaa gagtaccata gaatttttgt tagaaataat actgatactg 3060 gtcaaaaggg aaagatgtct ttggatgatg tgcacacaca gatctggact ccatggagtc 3120 tggtagatgc taatgcatgg ggctgttggt ttcagccaag tgactggcag ttcattcaaa 3180 actctatggc tgaacttaat cttgaaacat ttgagcaaga gatttttaat gttgtgctta 3240 agacagttac tgaacaaaac agtggaggtg cagatgctat caaagtctat aacaatgact 3300 tgacagcttc actcatggtt gctttggaca gcaacaattc tttgccttac acaccagctg 3360 cagctaccag tgaaactctg gggttctacc catggaaacc aactgcacca gctccataca 3420 ggtactactt ctatgtgcct agaaatcttt ctgttacata tcagaatgac acagatgctg 3480 tagtggatca agtaaaccaa actgatccat acaactctcg ctttttgact attgaaaaca 3540 caactccaat caccttgctg agaacaggtg atgagtttgc tactggcaca tacaagtttg 3600 aatgtgaacc tttgaaacta actcaccttt ggcagaacaa cagggctctg gggatgcctc 3660 cattgctggg agcactgcca ccaaatgaca atccaatcaa cattcaaaaa acagcaagca 3720 acaggtatgg tcagtctcag atacaaggct ctaacatact ttctgaagta actagactga 3780 gaccagtaca gattggtttt gctcaacctc atgatgtttt tgaagccagt gacagtggcc 3840 ctttcaaggt gcctctgatt agcatgttcc caacagacgg tgctgaccat gatggaaatg 3900 gaaatgtcag atacatgtac agcaaacagc acggggctac ctatgcacag caggctgctg 3960 actttgttga aaggtacacc tatgatccag caggaactgg gggaagaaac tacaactatg 4020 gctggactca agatgtgccg tgggtgagtc agcctgcaca acagcaaata cttacacaca 4080 aagacccaat aggcggtaaa aatggtgttc atccacagaa catcatgaat acctatgggc 4140 ctttgactgc atttccacac acgataccaa tctacccaca agggcagatc tgggacaaag 4200 aggttgattt ggaacacaaa cctagactgc atgctaatgc tccttttgtt tgtaaaggca 4260 accctccagg acaacttttt gtcagacttg caccaaacct gactgaccag tatgatccta 4320 acagctctaa cctgactagg attgtaacct atggcacatt cttctggaaa ggcaagctga 4380 cttttgtagc taagatgaga ccaaaccaga cctggaaccc aatacaccag atcacaactt 4440 ctcgtggtgg atctggcaga tatgatgaca taaccaagtg gctgcctaca cctacaggac 4500 acatgagaac agatcctctg cttacagcac ctattgctag aaacatctac taactaacca 4560 tgtttctttc tttgcttcac ataatactta agacaataaa aatacaacat agaaatatag 4620 acttacacat acagatacta gatggtaggt tggtaatatg gtatagatta actgttagaa 4680 ataatagaac ttttggtata actagatagt caatactgtt agatagaata aagaagataa 4740 tgtaatggga taatgtgggt ggttggttgg tttgccctta gactcgatgt taaggaccaa 4800 aaaaataata aaatctttga aaatgaacaa ggactactgt ctattcagtt gaccaactga 4860 accatttgta tcaatatgtc tttaaggggg ggtgggtggg agatacttac agacctatag 4920 accggtttgg tattgg 4936 //