ID AF035403; SV 1; linear; genomic RNA; STD; VRL; 6319 BP. XX AC AF035403; XX DT 06-JAN-1998 (Rel. 54, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 2) XX DE Turnip yellow mosaic Blue Lake isolate, complete genome. XX KW . XX OS Turnip yellow mosaic virus OC Viruses; Riboviria; Tymovirales; Tymoviridae; Tymovirus. XX RN [1] RP 1-6319 RX DOI; 10.1007/BF01309572. RX PUBMED; 1456892. RA Skotnicki M.L., Mackenzie A.M., Gibbs A.J.; RT "Turnip yellow mosaic virus variants produced from DNA clones encoding RT their genomes"; RL Arch. Virol. 127(1-4):25-35(1992). XX RN [2] RP 1-6319 RA Mackenzie A.M., Gibbs A.J., Keese P., Osorio-Keese M.E., Torronen M., RA Ding S.W., Howe J., Srifah P., Skotnicki M.L., Meek A.; RT "Taxonomy of the tymoviruses"; RL Unpublished. XX RN [3] RP 1-6319 RA Mackenzie A.M., Gibbs A.J., Keese P., Osorio-Keese M.E., Torronen M., RA Ding S.W., Howe J., Srifah P., Skotnicki M.L., Meek A.; RT ; RL Submitted (20-NOV-1997) to the INSDC. RL Research School of Biological Sciences, Australian National University, RL Biology Place, Acton, Canberra, ACT 2601, Australia XX DR MD5; d35b4a9d190ab569ede9cfde10583482. DR RFAM; RF00233; Tymo_tRNA-like. DR RFAM; RF00390; UPSK. XX FH Key Location/Qualifiers FH FT source 1..6319 FT /organism="Turnip yellow mosaic virus" FT /isolate="Blue Lake" FT /mol_type="genomic RNA" FT /db_xref="taxon:12154" FT 5'UTR 1..88 FT CDS 89..1975 FT /codon_start=1 FT /function="involved with movement" FT /note="overlapping protein" FT /db_xref="InterPro:IPR004935" FT /db_xref="UniProtKB/TrEMBL:O56253" FT /protein_id="AAB92648.1" FT /translation="MSNGLPISIGRPCTHDSQRSLSASDSRIHSRFDSLLDTDLPMVHS FT EGTSAPTQLLRHPNIWFGNIPPPPRRPQDNRDFSPLHPLVFPGHHSQLRHVHETQQVQQ FT TCPGELKLSGIEELPPAPQRQHSLPLHITRPSRFPHHFHARRPDVLPSLPDHGPILAKT FT KPRTSVRQPRSATRGPSFRPILLPEAVHVHDDPPHSPLRPGRSRSWQLQPTIRRPLLAP FT NQFNSPRQPPPFSDDPGILGPCPLAPNSTRDPPPRPITPGPFNTHGVRPLSVLPRAPPR FT RGLLPNPRRHRTSTGHIPSTTASRPIGPPSRLQRPVHLHQSGPHTPDFRPSGIRKDAFF FT QTRPRLGHLERLGQSADLRTSERTPSTKRRLPRPSEPNRLPSSLPEATLAPSYRHRRSH FT PLLPNPPAALPSIAYTSSRGKIHHSLPKGALPKEGPPPPPRRLPSPATPPQLPLRDLGC FT TPSFPTPPKTSTRAPESCIAAPPTDIAPLDSDPVLSVRTEVHAPERRTFMDPEALRAAL FT AGLPSPPRSVGIIHTASQTVLPTNSPSPTRHLPPTSSPWILQSPVGEDAIVDSEDDSIS FT SFHSHDFNSPSGPLRSQSPSRFRLHLRSPSTSSGIEPWSPASYDYGSAPDTD" FT CDS 96..5630 FT /codon_start=1 FT /product="replicase protein" FT /db_xref="GOA:O56254" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008043" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:O56254" FT /protein_id="AAB92649.1" FT /translation="MAFQLALDALAPTTHRDPSLHPILESTVDSIRSSIQTYPWSIPKE FT LLPLLNSYGIPTSGLGTSHHPHAAHKTIETFLLCTHWSFQATTPSSVMFMKPSKFSKLA FT QVNSNFRELKNYRLHPNDSTRYPFTSPDLPVFPTIFMHDALMYYHPSQIMDLFLQKPNL FT ERLYASLVVPPEAHLSDQSFFPKLYTYTTTRHTLHYVPEGHEAGSYNQPSDAHSWLRIN FT SIRLGNHHLSVTILESWGPVHSLLIQRGTPPPDPSLQAPSTLMASDLFRSYQEPRLDVV FT SFRIPDAIELPQATFLQQPLRDRLVPRAVYNALFTYTRAVRTLRTSDPAAFVRMHSSKP FT DHDWVTSNAWDNLQTFALLNVPLRPNVVYHVLQSPIASLALYLRQHWRRLTATAVPILS FT FLTLLQRFLPLPIPLAEVKSITAFRRELYRKKAPHHPLDVFHLQQHLRNYHSAISAVRP FT ASPPHQRLPHALQKAALLLLRPISPLLTATPFFRSEQKSMLPNAELSWTLKRFALPWQA FT SLVLLALSESSILLHKLFSPPTLQAQHDTYHRHLHPGSYSLQWERTPLSIPRTTAFLPF FT TPTTSTAPPDHSEASLPPAFASTSVPRPPPVASSPGAQPPTTTAAPPTPIEPTQRAHQN FT SDLTLESSTPIEPPPPSIQSPDIPPSAPVLFPEINSPRRFPPQLPTTPDFEPTRTSPPP FT STSHQDSTDPADPLMGSHLLHHSLPAPPTHPLPSSQLLPAPLTNDPTAIGPVLPFEELH FT PRKYPENTATFLTRLRSLPSNHLPQPTLNCLLSAVSDQTKVSEDHLWESLQTILPDSQL FT RNEEINSLGLSTEHLTALAHLYNFQATVYSDRGPILFGPSDTIKRIDITHTTGPPSHFS FT PGKRLLGSQPSAKRHPSDSLIRAMKSFKVSGNYLPFSEAHNHPTSISHAKNLVSNMKNG FT FDGVLSLLDVSTGQRTGPTPKDAIIQIDHYLDTNPGKTTPVVHFAGFAGCGKTYPIQQL FT LKTKLFKDFRVSCPTTELRTEWKTAMELHGSQSWRFNTWESSILKSSRILVIDEIYKMP FT RGYLDLSILADPALELVIILGDPLQGEYHSQSKDSSNHRLPSETLRLLPYIDMYCWWSY FT RIPQCIARLFRIHSFNAWQGVIGSVSTPHDQSPVLTNSHASSLTFNSLGYRSCTISSSQ FT GLTFCDPAIIVLDNYTKWLSSANGLVALTRSRSGVQFMGPSSYVGGTNGSSAMFSDAFN FT NSLIIMDRYFPSLFPQLKLITSPLTTRSPKLNGAAPSASPTHRSPNFHLPPHIPLSYDR FT DFVTVNPTLPDQGPETRLDTHFLPPSRLPLHFDLPPAITPPPVSTSVDPPQAKASPVYP FT GEFFDSLAAFFLPAHDPSTREILHKDQSSNQFPWFDRPFSLSCQPSSLISAKHAPNHDP FT TLLPASINKRLRFRPSEAPHQITADDVVLGLQLFHSLCRAYSRQPNSTVPFNPELFAEC FT ISLNEYAQLSSKTQSTIVANASRSDPDWRHTTVKIFAKAQHKVNDGSIFGSWKACQTLA FT LMHDYVILVLGPVKKYQRIFDNADRPSHIYSHCGKTPNQLRDWCQEHLTHSTPKIANDY FT TAFDQSQHGESVVLEALKMKRLNIPSHLIQLHVHLKTNVSTQFGPLTCMRLTGEPGTYD FT DNTDYNLAVIYSQYDVGSCPIMVSGDDSLIDHPLPTRHDWPSVLKRLHLRFKLELTSHP FT LFCGYYVGPAGCIRNPLALFCKLMIAVDDDALDDRRLSYLTEFTTGHLLGESLWHLLPE FT THVQYQSACFDFFCRRCPKHEKMLLDDSTPTLSLLERITSSPRWLTKNVMYLLPAKLRL FT AITSLSQTQSFPESIEVSRAESELLHYVQ" FT CDS 5645..6214 FT /codon_start=1 FT /product="virion protein" FT /db_xref="GOA:P90243" FT /db_xref="InterPro:IPR000574" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:P90243" FT /protein_id="AAB92650.1" FT /translation="MEIDKELAPQDRTVTVATVLPIAPGPSPFTIKQPFQSEVLFAGTK FT DAEASLTIANIDSVSTLTTFYRHASLESLWVTIHPTLQAPAFPTTVGVCWVPANSPVTP FT TQITKTYGGQIFCIGGAINTLSPLIVKCPLEMMNPRVKDSIQYLDSPKLLISITAQPTA FT PPASTCIITVSGTLSMHSPLITDTST" FT 3'UTR 6215..6319 XX SQ Sequence 6319 BP; 1459 A; 2426 C; 1065 G; 1369 T; 0 other; gtaatcaaat accaattcca gctctctttt gacaactggt cttataccaa ctttccgtac 60 acttgcaacc ctcgtaagac aattgcaaat gagtaatggc cttccaatta gcattggacg 120 cccttgcacc cacgactcac agagatccct ctctgcatcc gattctcgaa tccacagtag 180 attcgattcg ctcctcgata cagacctacc catggtccat tccgaaggaa cttctgcccc 240 tactcaactc ttacggcatc ccaacatctg gtttgggaac atcccaccac ccccacgccg 300 cccacaagac aatcgagact tttctccttt gcacccactg gtctttccag gccaccactc 360 ccagctccgt catgttcatg aaacccagca agttcagcaa acttgcccag gtgaactcaa 420 actttcggga attgaagaac taccgcctgc accccaacga cagcactcgt taccccttca 480 catcaccaga ccttcccgtt ttccccacca ttttcatgca cgacgccctg atgtactacc 540 atccctccca gatcatggac ctattcttgc aaaaaccaaa cctcgaacgt ctgtacgcca 600 gcctcgtagt gccacccgag gcccatcttt ccgaccaatc cttcttcccg aagctgtaca 660 cgtacacgac gacccgccac actctccact acgtcccgga aggtcacgaa gctggcagtt 720 acaaccaacc atccgacgcc cactcttggc tccgaatcaa ttcaattcgc ctcggcaacc 780 accacctttc agtgacgatc ctggaatcct ggggccctgt ccactcgctc ctaattcaac 840 gagggacccc cccccccgac ccatcactcc aggccccttc aacactcatg gcgtccgacc 900 tctttcggtc ttaccaagag ccccgcctcg acgtggtctc cttccgaatc ccagacgcca 960 tcgaacttcc acaggccaca ttccttcaac aaccgcttcg agaccgattg gtcccccgag 1020 ccgtctacaa cgccctgttc acctacacca gagcggtccg cacactccgg acttcagacc 1080 cagcggcatt cgtaaggatg cattcttcca aaccagacca cgattgggtc acctcgaacg 1140 cctgggacaa tctgcagacc ttcgcacttc tgaacgtacc ccttcgacca aacgtcgtct 1200 accacgtcct tcagagccca atcgcctccc tagctcttta cctgaggcaa cattggcgcc 1260 gtcttaccgc caccgccgtt cccatcctct ccttcctaac cctcctgcag cgcttccttc 1320 cattgcctat acctctagca gaggtaaaat ccatcacagc cttccgaagg gagctctacc 1380 gaaagaaggc cccccaccac cccctcgacg tcttccatct ccagcaacac ctccgcaatt 1440 accactccgc gatctcggct gtacgcccag cttccccacc ccaccaaaga cttccacacg 1500 cgctccagaa agctgcattg ctgctcctcc gaccgatatc gcccctcttg acagcgaccc 1560 cgttctttcg gtccgaacag aagtccatgc tcccgaacgc cgaactttca tggaccctga 1620 agcgcttcgc gctgccttgg caggcctccc tagtcctcct cgctctgtcg gaatcatcca 1680 tactgcttca caaactgttc tccccaccaa ctctccaagc ccaacacgac acctaccacc 1740 gacatcttca ccctggatcc tacagtctcc agtgggagag gacgccattg tcgattccga 1800 ggacgacagc atttcttcct ttcactccca cgacttcaac agcccctccg gaccactccg 1860 aagccagtct ccctcccgct ttcgcctcca cctccgttcc ccgtccacct ccagtggcat 1920 cgagccctgg agcccagcct cctacgacta cggcagcgcc cccgacaccg attgaaccca 1980 cccagcgcgc tcatcaaaat tctgacctca cgctcgaaag ttcaacccca attgaacctc 2040 ccccaccctc catccaatcc cccgacatcc caccttccgc ccccgttctt ttcccagaaa 2100 tcaactcacc gcgtcgtttt cccccccaac ttcccaccac acccgatttc gaacccaccc 2160 gcacttcacc ccctccttcc acttcgcatc aagattcgac tgaccccgcg gaccccctga 2220 tgggctctca ccttctgcac cattcactac ctgcacctcc cacccacccg cttccatctt 2280 cacagctctt acccgcacct ttgacaaacg accccaccgc gatcggcccg gtactcccct 2340 ttgaagaact ccacccacgc aagtaccccg aaaacaccgc cactttcctt acgaggctcc 2400 gttcactccc ttcaaaccat cttccacaac ccaccctgaa ttgtctcctc tctgctgtct 2460 ccgaccaaac caaggtttcc gaggaccacc tctgggagtc tttacagaca attctcccag 2520 acagccaact caggaacgaa gagatcaact ctctcggact ttcaactgaa cacctcaccg 2580 cgttggccca tctttacaac ttccaggcaa ctgtttactc cgatcgcggt cccatcctct 2640 tcggcccatc cgacaccatt aagagaatcg acatcaccca caccaccgga ccaccatccc 2700 acttttcacc cggcaaaaga cttttaggca gccaaccttc agccaagcgc catccctccg 2760 actcactcat cagagccatg aagtctttca aagtatccgg caactacctt cccttctctg 2820 aggcccacaa ccatcccacc tccatctcac atgccaagaa cttggtttca aacatgaaga 2880 atggattcga cggcgtcctc tcccttctcg acgtctccac aggccaacga accggaccca 2940 cccccaaaga cgcgatcatt cagatagacc actacctcga caccaacccc ggcaaaacca 3000 cccctgtggt gcattttgct ggctttgctg gctgtggaaa gacatatccg atccaacagc 3060 tccttaaaac caaactgttc aaagactttc gggtctcctg ccccaccaca gaactcagaa 3120 ccgaatggaa gactgcgatg gaacttcatg gctcccagtc atggcgcttt aacacttggg 3180 agtcttccat tctcaagtca tccagaattc tggtcatcga tgagatctac aaaatgccaa 3240 gagggtacct cgacctttcc attctcgctg accccgccct cgaactcgtc ataatcctcg 3300 gtgatcctct ccagggcgag taccactctc aatcgaaaga ctcatccaat caccgccttc 3360 cctccgaaac tctcaggctg ctaccataca ttgacatgta ctgctggtgg agttatcgca 3420 ttccccaatg catcgcccga ctcttccgaa ttcacagctt caatgcctgg caaggagtca 3480 tcggctccgt ttcaactccc catgatcaat cccccgttct caccaatagt catgcctcat 3540 ctctcacctt caacagcctg ggatatcgct cctgcacgat cagctctagc caaggcctca 3600 cattctgcga ccctgccatc atcgtcctgg acaactacac caagtggctc tcctcggcca 3660 acggcctcgt cgccctcacc cgatccagat caggtgtcca attcatgggc ccctcttcct 3720 atgtcggggg aaccaacggc tcttccgcca tgttttctga cgccttcaac aacagcctca 3780 tcatcatgga tcgctacttc ccatccctgt tcccacaact caagctcatc acctcccccc 3840 tcacaactcg cagccccaaa ctcaacgggg ccgcccccag cgcatctccc acccatcgct 3900 cgccaaactt ccacctcccc ccacacattc ccctctctta tgatcgtgat ttcgttacgg 3960 tgaacccaac tctccccgat cagggacccg aaacaagact cgacacccac ttcctcccac 4020 cttctcggct cccgcttcat ttcgatctcc caccagctat cacccccccc ccggtttcca 4080 caagcgtcga cccgccacaa gctaaagcta gccccgtcta tccaggcgag ttcttcgatt 4140 ctctggcggc gttcttctta ccagcacacg acccatcaac aagggaaata ctccacaaag 4200 atcaatctag caaccagttc ccttggttcg accgaccctt cagcttgtcc tgccagccct 4260 caagtttaat ttccgccaag catgcgccca atcacgatcc gacccttctg ccggcctcca 4320 tcaataagcg cttgcgattc agacccagtg aagcaccgca ccaaatcacc gcagacgacg 4380 tggtcctagg cctgcaactc ttccactctc tctgccgcgc ctactcacgt caacccaaca 4440 gcaccgttcc attcaaccct gaacttttcg cagaatgtat ctctctgaat gaatacgcgc 4500 agctcagttc caaaacccaa tccaccatag tggccaacgc ttcacgctcc gacccagact 4560 ggcgacacac caccgtcaag atttttgcga aagctcaaca caaagtcaac gacggctcca 4620 tcttcggttc atggaaggcc tgccaaactc tcgcactcat gcacgattac gtaattctag 4680 ttcttggacc cgtcaagaaa tatcaaagaa tcttcgacaa cgctgatcgg ccatctcata 4740 tctactcaca ctgcggcaag acacccaacc aacttcgaga ttggtgccag gaacatctca 4800 ctcattccac tccaaaaatc gcaaatgact acaccgcctt cgaccaatcc cagcatggag 4860 aatccgtggt tcttgaagcc ctcaaaatga agagactgaa cattccgagc catttgattc 4920 agctccatgt ccacctcaag accaacgtct ccacccagtt cggccccctc acatgcatgc 4980 gcctgaccgg ggaacccgga acttacgacg acaacactga ctacaacctc gcagtcatct 5040 actctcaata tgacgttggt tcctgcccca tcatggtctc tggcgacgac tcactcatag 5100 accaccctct tcccactcgc cacgactggc cctccgttct caaacgcctc cacctccgct 5160 ttaaacttga actcacttct catcccctct tttgtggcta ctacgtcggt ccagcaggct 5220 gcatccgcaa ccccctggct cttttctgca agctcatgat cgcagtggac gatgacgccc 5280 tcgacgaccg acgactcagc tacctcaccg agttcaccac cggacacctc cttggcgaat 5340 cactatggca cctcctcccc gaaacccacg tccagtatca gtcagcctgc ttcgacttct 5400 tctgcaggcg gtgcccaaaa cacgagaaga tgctcctcga tgattccaca cccacactca 5460 gcctcctcga acgaatcact tcttcaccga ggtggctcac caagaacgtc atgtatctcc 5520 tccccgccaa gctcagactg gctatcacct ctctgtctca aacgcaatct ttcccagaat 5580 ccatcgaggt ttcccgcgct gagtctgaat tgcttcacta cgtccaatag caatcagccc 5640 cgacatggaa atcgacaaag aactcgcccc ccaagaccgc accgtcaccg tcgccaccgt 5700 tttaccaatt gcccccggcc cctcaccttt caccatcaaa caaccgttcc agtctgaagt 5760 tctgtttgct gggaccaaag atgccgaggc ctctctcacc atcgccaaca tcgacagcgt 5820 ttccaccctt accaccttct accgtcatgc ctctctggaa tcactctggg tcaccatcca 5880 tcctaccttg caagccccgg ctttcccaac cacggttggc gtttgctggg tacccgccaa 5940 ctccccagtc actcccaccc agatcaccaa gacctacggc ggccagatct tctgcattgg 6000 aggcgccatc aacactctct cacccctcat cgtcaagtgc ccacttgaaa tgatgaaccc 6060 ccgggtcaaa gattcaattc aataccttga ctcgcccaaa ctcctcatct ccatcaccgc 6120 tcaacccacc gctccccccg catcgacctg cataataact gtatcaggaa ctctctcgat 6180 gcactctccg ctcatcacgg acacttccac ctaagttctc gatctttaaa atcgttagct 6240 cgccagttag cgaggtctgt ccccacacga cagataatcg ggtgcaactc ccgccccttt 6300 tccgagggtc atcggaacc 6319 //