ID AF034622; SV 1; linear; genomic RNA; STD; VRL; 6790 BP. XX AC AF034622; XX DT 08-FEB-1998 (Rel. 54, Created) DT 06-AUG-2001 (Rel. 68, Last updated, Version 3) XX DE Tobacco rattle virus RNA polymerase, 29 kDa protein, and 16 kDa protein DE genes, complete cds. XX KW . XX OS Tobacco rattle virus OC Viruses; Riboviria; Virgaviridae; Tobravirus. XX RN [1] RP 1-6790 RX DOI; 10.1007/s007050050396. RX PUBMED; 9739332. RA Sudarshana M.R., Berger P.H.; RT "Nucleotide sequence of both genomic RNAs of a North American tobacco RT rattle virus isolate"; RL Arch. Virol. 143(8):1535-1544(1998). XX RN [2] RP 1-6790 RA Sudarshana M.R., Berger P.H.; RT ; RL Submitted (17-NOV-1997) to the INSDC. RL Plant, Soil, and Entomological Sciences, University of Idaho, Room 242, RL Agricultural Sciences, Moscow, ID 83844-2339, USA XX DR MD5; a5a200432723be7462a4aa202e59c101. DR RFAM; RF01101; TLS-PK6. XX FH Key Location/Qualifiers FH FT source 1..6790 FT /organism="Tobacco rattle virus" FT /chromosome="RNA1" FT /isolate="ORY" FT /mol_type="genomic RNA" FT /db_xref="taxon:12295" FT CDS 202..5325 FT /codon_start=1 FT /transl_except=(pos:3763..3765,aa:OTHER) FT /product="RNA polymerase" FT /note="readthrough protein" FT /db_xref="GOA:O56250" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:O56250" FT /protein_id="AAC02066.2" FT /translation="MANGNFKLSQLLNVDEMSAEQRSHFFDLMLTKPDCEIGQMMQRVV FT VDKVDDMIRERKTKDPVIVHEVLSQKEQNKLMEIYPEFNIVFKDDKNMVHGFAAAERKL FT QALLLLDRVPALQEVDDIGGQWSFWVTRGEKRIHSCCPNLDIRDDQREISRQIFLTAIG FT DQARSGKRQMSENELWMYDQFRENIAAPNAVRCNNTYQGCTCRGFSDGKKKGAQYAIAL FT HSLYDFKLKDLMATMVEKKTKVVHAAMLFAPESMLVDEGPLPSVDGYYMKKNGKIYFGF FT EKDPSFSYIHDWEEYKKYLLGKPVSYQGNVFYFEPWQVRGDTMLFSIYRIAGVPRRSLS FT SQEYYRRIYISRWENMVVVPIFDLVESTRELVKKDLFVEKQFMDKCLDYIARLSDQQLT FT ISNVKSYLSSNNWVLFINGAAVKNKQSVDSRDLQLLAQTLLVKEQVARPVMRELREAIL FT TETKPITSLTDVLGLISRKLWKQFANKIAVGGFVGMVGTLIGFYPKKVLTWAKDTPNGP FT ELCYENSHKTKVIVFLSVVYAIGGITLMRRDIRDGLVKKLCDMFDIKRGAHVLDVENPC FT RYYEINDFFSSLYSASESGETVLPDLSEVKAKSDKLLQQKKEIADEFLSAKFSNYSGSS FT VRTSPPSVVGSSRSGLGLLLEDSNVLTQARVGVSRKVDDEEIMEQFLSGLIDTEAEIDE FT VVSAFSAECERGETSGTKVLCKPLTPPGFENVLPAVKPLVSKGKTVKRVDYFQVMGGER FT LPKRPVVSGDNSVDARREFLYYLDAERVAQNDEIMSLYRDYSRGVIRTGGQNYPHGLGV FT WDVEMKNWCIRPVVTEHAYVFQPDKRMDDWSGYLEVAVWERGMLVNDFAVERMSDYVIV FT CDQTYLCNNRLILDNLSALDLGPANCSFELVDGVPGCGKSTMIVNSANPCVDVVLSTGR FT AATDDLIERFASKGFPCKLKRRVKTVDSFLMHCVDGSLTGDVLHFDEALMAHAGMVYFC FT AQIAGAKRCICQGDQNQISFKPRVSQVDLRFSSLVGKFDIVTEKRETYRSPADVVAVLN FT KYYTGDVRTHNATANSMTVRKIVSKEQVSLKPGAQYITFLQSEKKELVNLLALRKVAAK FT VSTVHESQGETFKDVVLVRTKPTDDSIARGREYLIVALSRHTQSLVYETVKEDDVSKEI FT RESAALTKAALARFFVTETVLXRFRSRFDVFRHHEGPCAVPDSGTITDLEMWYDALFPG FT NSLRDSSLDGYLVATTDCNLRLDNVTIKSGNWKDKFAEKEAFLKPVIRTAMPDKRKTTQ FT LESLLALQKRNQAAPDLQENVHATVLIEETMKKLKSVVYDVGKIRADPIVNRAQMERWW FT RNQSTAIQAKVVADVRELHEIDYSSYMYMIKSDVKPKTDLTPQFEYSALQTVVYHEKLI FT NSLFGPIFKEINERKLDAMQPHFVFNTRMSSSDLNDRVKFLNTEAAYDFVEIDMSKFDK FT SANRFHLQLQLEIYRLFGLDEWAAFLWEVSHTQTTVRDIQNGMMAHIWYQQKSGDADTY FT NANSDRTLCALLSELPLEKAVMVTYGGDDSLIAFPRGTQFVDPCPKLATKWNFECKIFK FT YDVPMFCGKFLLKTSSCYEFVPDPVKVLTKLGKKSIKDVQHLAEIYISLNDSNRALGNY FT MVVSKLSESVSDRYLYKGDSVHALCALWKHIKSFTALCTLFRDENDKELNPAKVDWKKA FT QRAVSNFYDW" FT CDS 5327..6085 FT /codon_start=1 FT /note="29 kDa protein" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:O56251" FT /protein_id="AAC02067.1" FT /translation="MEDKSLVTLKKKTFEVSKFSNLGAIELFVDGRRKRPKYFHRRRET FT VLNHVGGKKSEHKLDVFDQRDYKMIKSYAFLKIVGVQLVVTSHLPADTPGFIQIDLLDS FT RLTEKGKKGKTIQRFKARARDNCSVAQYKVEYSISTQENVLDVWKVGCISEGVPVCDGT FT YPFSIEVSLIWVATDSTRRLNVEELNSSDYIEGDFTDQEVFGEFMSLKQVEMKTIEAKY FT DGPYRPATTRPKSLLSSEDVKRASNKKNSS" FT CDS 6110..6535 FT /codon_start=1 FT /note="16 kDa protein" FT /db_xref="InterPro:IPR007968" FT /db_xref="UniProtKB/TrEMBL:O56252" FT /protein_id="AAC02068.1" FT /translation="MTCVPKGCVNEVTVLGHETCSIGHANKLRKQVADMVGVTRRCAEN FT NCGWFVCVVINDFTFDVYNCCGRSHLEKCRKRVETRNREIWKQTRRNQAENMSATTKKS FT HNSKTSKKKFKEDREFGTPKRFLRDDVPFGIDRVFAF" XX SQ Sequence 6790 BP; 1996 A; 1130 C; 1737 G; 1927 T; 0 other; ataaaacatt tcaatccttt gaacgcggta gaacgtgcta attggatttt ggtgagaacg 60 cggtagaacg tacttatcac ctacagtttt attttgtttt tctttctggt ttaatctatc 120 cagcttagta ccgagtgggg aaagtgactg gtgtgcctaa aaccttttct ttgatacttt 180 gtaaaaatac atacagatac aatggcgaac ggtaacttca agttgtctca attgctcaat 240 gtggacgaga tgtctgctga gcagaggagt catttctttg acttgatgct gactaaacct 300 gattgtgaga tcgggcaaat gatgcaaaga gttgttgttg ataaagtcga tgacatgatt 360 agagaaagaa agactaaaga tccagtgatt gttcatgaag ttctttctca gaaggaacag 420 aacaagttaa tggaaattta tcctgaattc aatatcgtgt tcaaagacga caaaaacatg 480 gttcatgggt ttgcggcagc tgagcgaaaa ctacaagctt tattgctttt agatagagtt 540 cctgctctgc aagaggtgga tgacatcggt ggtcaatggt cgttttgggt aactagaggt 600 gagaaaagga ttcattcctg ttgtccaaat ctagatattc gggatgatca gagagaaatt 660 tctcgacaga tatttcttac tgctattggt gatcaagcta gaagtggtaa gagacagatg 720 tcggagaatg aattgtggat gtatgaccaa tttcgtgaaa atattgctgc gcctaacgcg 780 gttaggtgca ataatacata tcagggttgt acatgtagag gtttttctga tggtaagaag 840 aaaggcgcgc agtatgcgat agctcttcac agcctgtatg acttcaagtt gaaagacttg 900 atggctacta tggttgagaa gaaaactaaa gtggttcatg ctgctatgct ttttgctcct 960 gagagtatgt tagtggacga aggtccatta ccttctgttg acggttacta catgaagaag 1020 aacgggaaga tctatttcgg ttttgagaaa gatccttcct tttcttacat tcatgactgg 1080 gaagagtaca agaagtatct actggggaag ccagtgagtt accaagggaa tgtgttctac 1140 ttcgaaccgt ggcaggtgag aggagacacg atgctttttt cgatctacag gatagctgga 1200 gttccgagga ggtctctatc atcgcaagag tactaccgaa gaatatatat cagtagatgg 1260 gaaaacatgg ttgttgtccc aattttcgat ctggtcgaat caacgcgaga gttggtcaag 1320 aaagacctgt ttgtagagaa acaattcatg gacaagtgtt tggattacat agctaggtta 1380 tctgaccagc agctgaccat aagcaatgtc aaatcatact tgagttcaaa taattgggtc 1440 ttattcataa acggggcggc cgtgaagaac aagcaaagtg tagattctcg agatttacag 1500 ttgttggctc aaactttgct agtgaaggaa caagtggcga gacctgtcat gagggagttg 1560 cgtgaagcaa ttctgactga gacgaaacct atcacgtcat tgactgatgt gctgggttta 1620 atatcaagaa aactgtggaa gcagtttgct aacaagatcg cagtcggcgg attcgttggc 1680 atggttggta ctctaattgg attctatcca aagaaggtac taacctgggc gaaggacaca 1740 ccaaatggtc cagaactatg ttacgagaac tcgcacaaaa ccaaggtgat agtatttctg 1800 agtgttgtgt atgccattgg aggaatcacg cttatgcgtc gagacatccg agatggactg 1860 gtgaaaaaac tatgtgatat gtttgatatc aaacgggggg cccatgtctt agacgttgag 1920 aatccgtgcc gctattatga aatcaacgat ttctttagca gtctgtattc ggcatctgag 1980 tccggtgaga ccgttttacc agatttatcc gaggtaaaag ccaagtctga taaactattg 2040 cagcagaaga aagaaatcgc tgacgagttt ctaagtgcaa aattctctaa ctattctggc 2100 agttcggtga gaacttctcc accatcggtg gtcggttcat ctcgaagcgg actgggtctg 2160 ttgttggaag acagtaacgt gctgacccaa gctagagttg gagtttcaag aaaggtagac 2220 gatgaggaga tcatggagca gtttctgagt ggtcttattg acactgaagc agaaattgac 2280 gaggttgttt cagccttttc agctgaatgt gaaagagggg aaacaagcgg tacaaaggtg 2340 ttgtgtaaac ctttaacgcc accaggattt gagaacgtgt tgccagctgt caaacctttg 2400 gtcagcaaag gaaaaacggt caaacgtgtc gattacttcc aagtgatggg aggtgagaga 2460 ttaccaaaaa ggccggttgt cagtggagac aattctgtgg acgctagaag agagtttctg 2520 tactacttag atgcggagag agtcgctcaa aatgatgaaa ttatgtctct gtatcgtgac 2580 tattcgagag gagttattcg aactggaggt cagaattacc cgcacggact gggagtgtgg 2640 gatgtggaga tgaagaactg gtgcatacgt ccagtggtca ctgaacatgc ttatgtgttc 2700 caaccagaca aacgtatgga tgactggtcg ggatacttag aagtggctgt ttgggaacga 2760 ggtatgttgg tcaacgactt cgcggtcgaa aggatgagtg attatgtcat agtttgcgat 2820 cagacgtatc tttgcaataa caggttgatc ttggacaatt taagtgccct ggatctagga 2880 ccagctaact gttcttttga attagttgac ggtgtacctg gttgcggtaa gtcgacaatg 2940 attgtcaact cagctaatcc ttgtgtcgat gtggttctct ctactgggag agcagcaacc 3000 gacgacttga tcgagagatt cgcgagcaaa ggttttccat gcaaattgaa aaggagagtg 3060 aagacggttg attctttttt gatgcattgt gttgatggtt ctttaaccgg agacgtgttg 3120 catttcgatg aagcactcat ggcccatgct ggtatggtat acttttgcgc tcagatagct 3180 ggtgctaaac gatgtatctg tcaaggagat cagaatcaaa tttctttcaa gcctagggta 3240 tctcaagttg atttgaggtt ttctagtctg gtcggaaagt ttgacattgt tacagaaaaa 3300 agagaaactt acagaagtcc agcagatgtg gttgccgtat tgaacaagta ctatactgga 3360 gatgtcagaa cacataacgc gactgctaat tcgatgacgg tgaggaagat tgtgtctaaa 3420 gaacaggttt ctttgaagcc tggtgctcag tacataactt tccttcagtc tgagaagaag 3480 gagttggtaa atttgttggc attgaggaaa gtggcagcta aagtgagtac agtacacgag 3540 tcgcaaggag agacattcaa agatgtagtc ctagtcagga cgaaacctac ggatgactca 3600 atcgctagag gtcgggagta cttaatcgtg gcgttgtcgc gtcacacaca atcacttgtg 3660 tatgaaactg tgaaagagga cgatgtaagt aaagagatca gggaaagtgc cgcgcttacg 3720 aaggcggctt tggcaagatt ttttgttact gagaccgtct tatgacggtt tcggtctagg 3780 tttgatgttt ttagacatca tgaagggcct tgcgccgttc cagattcagg tacgattacg 3840 gacttggaga tgtggtacga cgctttgttt ccaggaaatt cgttaagaga ctcaagccta 3900 gacgggtatt tggtggcaac gactgattgc aatttgcgat tagacaatgt tacgatcaaa 3960 agtggaaact ggaaagacaa gtttgctgaa aaagaagcgt ttctgaaacc ggttattcgt 4020 actgctatgc ctgacaaaag gaagactact cagttggaga gtttgttagc attgcagaaa 4080 aggaaccaag cggcacccga tctacaagaa aatgtgcacg caacagttct aatcgaagag 4140 acgatgaaga agctgaaatc tgttgtctac gatgtgggaa agattcgggc tgatcctatt 4200 gtcaatagag ctcaaatgga gagatggtgg agaaatcaaa gcacagcgat acaggctaag 4260 gtagtagcag atgtgagaga gttacatgaa atagactatt cgtcttatat gtatatgatc 4320 aaatctgacg tgaaacctaa gactgattta acaccgcaat ttgaatactc agctctacag 4380 actgttgtgt atcacgagaa gttgatcaac tcgttgttcg gtccaatttt caaagaaatt 4440 aatgaacgca agttggatgc tatgcaacca cattttgtgt tcaacacgag aatgtcatcg 4500 agtgatttaa acgatcgagt gaagttctta aatacggaag cggcttacga ctttgttgag 4560 atagacatgt ctaaattcga caagtcggca aatcgcttcc atttacaact gcagttggag 4620 atttacaggt tatttgggct agatgagtgg gcggccttcc tttgggaggt gtcgcacact 4680 caaactactg tgagagatat tcaaaatggt atgatggcgc atatttggta ccaacaaaag 4740 agtggagatg ctgatactta taatgcgaat tcagatagga cactgtgtgc actcttgtct 4800 gaattaccat tggagaaagc agtcatggtt acatatggag gagatgactc actgattgcg 4860 tttcctagag gaacacagtt tgttgatccg tgtccaaagt tggctactaa atggaatttc 4920 gagtgcaaga tttttaagta cgatgtccca atgttttgtg ggaagttctt gcttaagacg 4980 tcatcgtgtt acgagttcgt gccagatccg gtaaaagttc tgacgaagtt ggggaaaaag 5040 agtataaagg atgtgcaaca tttagccgag atctacatct cgctgaatga ttccaataga 5100 gctcttggga actacatggt ggtatccaaa ctgtccgagt ctgtttcaga ccggtatttg 5160 tacaaaggtg attctgttca tgcgctttgt gcgctatgga agcatattaa gagttttaca 5220 gctctgtgta ctttattccg agacgaaaac gataaggaat tgaacccggc taaggttgat 5280 tggaagaagg cacagagagc tgtgtcaaac ttttacgact ggtaatatgg aagacaagtc 5340 attggttacc ttgaagaaga agactttcga agtctcaaaa ttctcaaatc taggggccat 5400 tgaattgttt gtggacggta ggaggaagag accgaagtat tttcacagaa gaagagaaac 5460 tgtcctaaat catgttggtg ggaagaagag tgaacacaag ttagacgttt ttgaccaaag 5520 ggattacaaa atgattaaat cttacgcgtt tctaaagata gtaggtgtac aactagttgt 5580 aacatcacat ctacctgcag atacgcccgg gttcattcaa atcgatctgt tggattcgag 5640 acttactgag aaaggaaaga aaggaaagac tattcagaga ttcaaagctc gagctcgcga 5700 taactgttca gttgcgcagt acaaggttga atacagtatt tccacacagg agaatgtact 5760 tgatgtctgg aaggtgggtt gtatttctga gggcgttccg gtctgtgacg gtacataccc 5820 tttcagtatc gaagtgtcgc taatatgggt tgctactgat tcgactaggc gcctcaatgt 5880 ggaagaactg aacagttcgg attacattga aggcgatttt accgatcaag aggttttcgg 5940 tgagttcatg tctttgaaac aagtggagat gaagacgatt gaggcgaagt atgatggtcc 6000 ttacagacca gctactacta gacctaagtc attattgtca agtgaagatg ttaagagagc 6060 gtctaataag aaaaactcgt cttaatgcat aaagaaattt attgtcaata tgacgtgtgt 6120 acccaagggt tgtgtgaatg aagtcactgt tcttggtcac gagacgtgta gtatcggtca 6180 tgctaacaaa ttgcgaaagc aagttgctga catggttggt gtcacacgta ggtgtgcgga 6240 aaataattgt ggatggtttg tctgtgttgt tatcaatgat tttacttttg atgtgtataa 6300 ttgttgtggc cgtagtcacc ttgaaaagtg tcgtaaacgt gttgaaacaa gaaatcgaga 6360 aatttggaaa caaactcgac gaaatcaagc tgaaaacatg tctgcgacaa ctaaaaagtc 6420 tcataattcg aaaacctcta agaagaaatt caaagaggac agagaatttg ggacaccaaa 6480 aagattttta agagatgatg ttcctttcgg gattgatcgt gtgtttgctt tttgatttta 6540 ttttatattg ttatctgttt ctgtgtatag actgtttgag attggcgttt ggccgactca 6600 ttgtcttacc atagggggac agactttgtt tgtgttgtta ttttatttgt attttattaa 6660 aattctcaat gatctgaaaa ggcctcgagg ctaagagatt attggggggt gagtaagtac 6720 ttttaaagtg atgatggtta caaaggcaaa aggggtaaaa cccctcgcct acgtaagcgt 6780 tattacgccc 6790 //