ID AF034621; SV 1; linear; genomic RNA; STD; VRL; 3261 BP. XX AC AF034621; XX DT 08-FEB-1998 (Rel. 54, Created) DT 06-AUG-2001 (Rel. 68, Last updated, Version 2) XX DE Tobacco rattle virus RNA2, complete sequence. XX KW . XX OS Tobacco rattle virus OC Viruses; Riboviria; Virgaviridae; Tobravirus. XX RN [1] RP 1-3261 RX DOI; 10.1007/s007050050396. RX PUBMED; 9739332. RA Sudarshana M.R., Berger P.H.; RT "Nucleotide sequence of both genomic RNAs of a North American tobacco RT rattle virus isolate"; RL Arch. Virol. 143(8):1535-1544(1998). XX RN [2] RP 1-3261 RA Sudarshana M.R., Berger P.H.; RT ; RL Submitted (17-NOV-1997) to the INSDC. RL Plant, Soil, and Entomological Sciences, University of Idaho, Room 242, RL Agricultural Sciences, Moscow, ID 83844-2339, USA XX DR MD5; 3d3003a716ceed229efa45639f840016. DR RFAM; RF01101; TLS-PK6. XX FH Key Location/Qualifiers FH FT source 1..3261 FT /organism="Tobacco rattle virus" FT /chromosome="RNA2" FT /isolate="ORY" FT /mol_type="genomic RNA" FT /db_xref="taxon:12295" FT regulatory 424..429 FT /note="putative; subgenomic" FT /regulatory_class="promoter" FT CDS 522..1124 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:O56247" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:O56247" FT /protein_id="AAC02063.1" FT /translation="MTDGMYDEEFDSKALNETFSPWVEEKNWKDVLMRLSAMKFALQAD FT RDKIPGVLSDLKKDCPFSAFKRFPDKEMWSKLTKEAVIALAQIQAASSFKRRADEKNAV FT SGLITATPAQASTSNANPSGSATTVVRPPRLDDSSFQEDSFSFGKFDDASTAYHKALSY FT LEGLNLKPLYRRQFEKSYNTRWVPAATPVAPGPRPNP" FT regulatory 1211..1216 FT /note="putative; subgenomic" FT /regulatory_class="promoter" FT CDS 1237..2202 FT /codon_start=1 FT /note="putative 38 kDa protein; proposed to be generated FT from subgenomic mRNA" FT /db_xref="UniProtKB/TrEMBL:O56248" FT /protein_id="AAC02064.1" FT /translation="MEEYRLWSKNPDYFFSDNAKLFLLHGHHDSPYYKSGEYTVSRSVN FT WGDPEFLMVIGMSRLLTFLSERHLCINVDGNCYSRIQEGLYYYGKFDIYSLMVGNSTQW FT DDFVIYRELMRVHIDFRNVLELLQLAGADRGRLFPRLRELLDLEKVVYSTSKLPDKDIT FT LMIQNLKDQLSATTLENDNLKKEIVMLKSRVEAAQAQAQTRHLENDDLKKQIESLKKKT FT ADVGSISEAIVQVPVVLPAKPTPKVKKYPDDYNNEELSATSKVSDDNDFEHLSPIEKRI FT WGPKEVYHYVKMYYRFPQRNFIDERIVKDKEREDRRASGL" FT regulatory 2209..2213 FT /note="putative; subgenomic" FT /regulatory_class="promoter" FT CDS 2214..2690 FT /codon_start=1 FT /note="putative 18 kDa protein; proposed to be generated FT from subgenomic mRNA" FT /db_xref="UniProtKB/TrEMBL:O56249" FT /protein_id="AAC02065.1" FT /translation="MTSASIWTLKQGDYPKGSMLIRRRVKNSVLTGKGGYVDLDGNVAV FT GTGWRWEIDFSDLRKLRFSFDSSDTMFGHLRLTFELFTTVNFKSIASYKHEGYKSSPSN FT KLLLLNKVVTNNSYMVTVDEELIRATSFEVVFEWPAPDWTGHLDSVLPSLPSRP" FT misc_feature 2698..3261 FT /note="proposed RNA1-derived sequence" XX SQ Sequence 3261 BP; 938 A; 579 C; 787 G; 957 T; 0 other; ataaaacatt gcaccattgg tgttgccctg gccggggtgt gtctttgaac gcagtagtat 60 gtgctaattg acaagttgga gaacgcggta gaacgtactt atccgacacg gccttttatc 120 cctttgttga gaggtttttc tcagccgcaa tgaaattctg gatttagttg gccgctagaa 180 ggctgaagga atgtagttgt gtttttagtt tagttaataa gtgtcttcca atacacatta 240 aaccttggac gtgttagcta cgaaagtgtg taaatttaaa aacaattagt cctccgtgat 300 taaggatgat taaggctaaa aacgattgtt aatgattttg gcaatcgcat ccattcgcta 360 tcacaagcga tggtggcatt gacccggaag gtctaatctt gcggtcattc gactggaaga 420 agcataatta tactgattgt gcaactttgt gttactattc tgacagtgat tcttgctgaa 480 ctactggtta ctgtatcact tgcaatcact cacgttccgc gatgacagac ggtatgtacg 540 atgaggagtt tgatagcaaa gctctcaacg aaacgttttc gccatgggtt gaggagaaga 600 actggaaaga cgttctaatg aggttgagcg ctatgaaatt tgcgttacaa gctgacaggg 660 acaaaattcc tggggtttta tcggatctga aaaaggactg tcctttcagt gcttttaaga 720 ggtttcctga caaagagatg tggtcgaaat tgacgaagga ggctgtcatt gctttagctc 780 aaattcaagc tgcttcttct tttaagagga gggcagatga aaagaatgct gtttctgggt 840 tgattactgc aacacctgct caagcttcta ctagtaacgc gaacccaagt ggttcagcaa 900 ccacagtggt gagaccacca aggttggacg actcgtcttt ccaagaggat agcttttctt 960 ttggtaagtt cgatgacgct tctactgcgt atcataaagc tctctcctat ttggaaggtt 1020 taaatttgaa accgttatat aggagacagt ttgagaaatc gtacaacact aggtgggttc 1080 ctgctgccac tccggtggcg cctgggccgc gtccgaatcc ctaattctaa gtttgtcaga 1140 tactctttca gagggtcacg tgaaaatcgt gaggtggtgt ttaccatata acataatgtc 1200 atatgtgggc atttaaaata atcacactgc tgcgagatgg aggagtatag gctttggtca 1260 aagaatccgg attatttctt ttccgacaat gcaaaactgt tcttactgca tgggcatcac 1320 gatagtccgt attataagag cggggaatac actgtttctc gttcggttaa ttggggagat 1380 cctgaatttc ttatggtaat tggaatgtct agacttttaa ctttcctatc agaaagacat 1440 ttatgtatca atgtggacgg gaattgttat tcacggatcc aagagggtct gtattactat 1500 ggaaagtttg acatttactc gttgatggtt ggaaatagta ctcagtggga tgatttcgta 1560 atttatagag agctaatgag agttcacatc gactttcgta acgtgttaga acttcttcag 1620 ctggctggcg ctgatagagg tcgactgttt cctaggttgc gagaattgtt agacctcgaa 1680 aaagtcgttt attcgacgtc aaaactaccg gacaaagata ttacgctgat gatacaaaat 1740 ctcaaagatc agttgtctgc gacgacttta gagaacgaca atttgaagaa agagatcgtc 1800 atgctgaaga gtcgagtcga agctgcacaa gcgcaagctc agactagaca tctcgaaaac 1860 gacgatctga agaaacaaat cgagtcgttg aagaagaaaa ccgcagatgt gggaagtatc 1920 tctgaagcta ttgttcaagt accggtggtg ttgcctgcga agccgactcc taaagttaag 1980 aagtatcccg atgattacaa caacgaggaa ctgagtgcaa cgtcaaaggt aagcgatgat 2040 aatgatttcg agcatttatc accaattgaa aaaagaattt ggggccctaa ggaagtatat 2100 cattatgtta agatgtatta cagattccca cagaggaatt tcatagacga acgcattgtc 2160 aaagacaagg aaagagaaga cagacgcgca agcggtctgt agaccggcat aaaatgacga 2220 gcgcatccat ctggacccta aaacagggtg attacccgaa gggttctatg ttaattcgta 2280 ggagggttaa aaattctgtc ttgactggaa aaggtggtta cgtagatctg gacggtaatg 2340 tagcggtcgg aactggatgg cgatgggaaa tcgactttag tgacctgcgt aagctgcgat 2400 tttcgtttga ttcttcagat actatgtttg gtcatttacg gttaactttt gaactattca 2460 ctacggtgaa ttttaagtca atagcctctt ataagcacga aggttacaag tcgtcaccgt 2520 cgaataagct gttgcttctc aacaaggtag tgaccaacaa tagttatatg gtgacggtag 2580 acgaagaact cataagagcg acttcttttg aagttgtctt cgaatggcct gcaccagatt 2640 ggaccggtca cttggactca gtgcttcctt cactaccttc aagaccttaa gggttgacgt 2700 aggtgcgcgg agagtaattg tggatggttt gtctgtatta ttatcaatga ttttactttt 2760 gatatgtata attgttgtgg ccgtagccac cttggaaaat gtcgtagacg cgttgaagca 2820 agaaatcgag agttctggaa acagattcga cgaaatcaag ctgaaaacac gtcttcgaca 2880 cctaaaaagt ctcataattc gaagacctct aagaagaaat tcaaaggggt cagagaattc 2940 ggggcaccaa aaagattttt aagagatgat gttccgttag gaattgatca attatttgct 3000 tttaaatttt gttttaaatt gttatccgtt tctgtgtata gactgtttga gattggcgct 3060 tggccgactc attgtcttac cataggggaa cggactttgt ttgtgttgtt attttatttg 3120 tattttatta aaattctcaa tgatctgaaa aggcctcgag gctaagagat tattgggggg 3180 tgagtaagta cttttaaagt gatgatggtt acaaaggcaa aaggggtaaa acccctcgcc 3240 tacgtaagcg ttattacgcc c 3261 //