ID AF033810; SV 1; linear; genomic RNA; STD; VRL; 4788 BP. XX AC AF033810; XX DT 23-JAN-1998 (Rel. 54, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 4) XX DE Fujinami sarcoma virus, complete genome. XX KW . XX OS Fujinami sarcoma virus OC Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Alpharetrovirus. XX RN [1] RP 1-4788 RA Petropoulos C.J.; RT "Appendix 2: Retroviral taxonomy, protein structure, sequences, and genetic RT maps"; RL (in) Coffin J.M. (Eds.); RL RETROVIRUSES; RL Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York, NY, USA RL (1997) XX RN [2] RP 1-4788 RA Chappey C.; RT ; RL Submitted (12-NOV-1997) to the INSDC. RL NIH, NLM, Rockville Pike, Bethesda, MD 20894, USA XX DR MD5; 15faeca8875a08fabe07893c53a5426f. DR EuropePMC; PMC111557; 10590135. DR EuropePMC; PMC111912; 10756010. DR EuropePMC; PMC115148; 11160701. DR EuropePMC; PMC291877; 14654682. DR EuropePMC; PMC3082916; 21183462. DR RFAM; RF00214; Retro_dr1. DR RFAM; RF00467; RSV_PBS. XX FH Key Location/Qualifiers FH FT source 1..4788 FT /organism="Fujinami sarcoma virus" FT /mol_type="genomic RNA" FT /db_xref="taxon:11885" FT mRNA 22..4442 FT /product="p140 polyprotein" FT 5'UTR 22..102 FT CDS 380..3928 FT /codon_start=1 FT /product="p140 polyprotein" FT /db_xref="GOA:O92807" FT /db_xref="InterPro:IPR000719" FT /db_xref="InterPro:IPR000980" FT /db_xref="InterPro:IPR001060" FT /db_xref="InterPro:IPR001245" FT /db_xref="InterPro:IPR004028" FT /db_xref="InterPro:IPR008266" FT /db_xref="InterPro:IPR008919" FT /db_xref="InterPro:IPR010999" FT /db_xref="InterPro:IPR011009" FT /db_xref="InterPro:IPR012344" FT /db_xref="InterPro:IPR017441" FT /db_xref="InterPro:IPR020635" FT /db_xref="InterPro:IPR027267" FT /db_xref="InterPro:IPR031160" FT /db_xref="InterPro:IPR035849" FT /db_xref="InterPro:IPR036860" FT /db_xref="UniProtKB/TrEMBL:O92807" FT /protein_id="AAC82565.1" FT /translation="MEAVIKVISSACKTYCGKTSPSKKEIGAMLSQLQKEGLLMSLSDL FT YSPGSWDPITAALTQRAMVLGKSGELKTWGLVLGALKAAREEQVTSEQAKFWLGLGGGR FT VSPPGPECIEKPATERRIDKGETTVQRDTKMAPEETATPKTVGTSCYHCGTAIGCNCAT FT ASAPPPPYVGSGLYPSLAGVGEQQGQGGDTPRGAEQPRAEPGRTGLAPGPALTDWARIR FT EELASTGPPMVAMPVVIKTEGPAWTPLEPKLIAGLAGAVGAGGLRSPIAVAGVEALMSS FT PLLPHDVTNPMRVILGPAPHALWMDAWAASGQLHRPQPQEHTSTSAAAGTWRLTQASES FT RHRLPHCSAAPSHQDHSAMGFGPELWCPKGHTELLRLQDSELRLLELMKKWMSQRAKSD FT REYAGMLHHMFSQLEKQEGLGHLRATDHSSQIGESWWVLASQTETLSQTLRRHAEELAA FT GPLAKLSILIRDKQQLRKVFSEQWQQLSQEYAWTTQQEVEKLKAQYRSLVRDSTQAKRK FT YQEASKDKEREKAKEKYVRSLSKLYALHNQYVLAVQAAALHHHHHYQRALPTLHESLYS FT LQQEMVLVLKEILGEYCSITSLVQEDVLAIHQKVAHAVEMIDPATEYSSFVQCHRYDSE FT VPPAVTFDESLLEEAENLEPGELQLNELTIESVQHSLTSIEEELLASRKAVSSKEQRVW FT ELQVELRGEELALSPGERVHLLGKRQGLREAQQQLQGLVCAQAKLQAQRDMLANKLAEL FT GSEEPPPALPLQEDRQSARSTDQERSGVTALKTIKNHISGIFSPRFSLPPPVPLIPEVQ FT KPLCQQAWYHGAIPRSEVQELLKYSGDFLVRESQGKQEYVLSVLWDGQPRHFIIQAADN FT LYRLEDDGLPTIPLLIDHLLQSQRPITRKSGIVLTRAVLKDKWVLNHEDVLLGERIGRG FT NFGEVFSGRLRADNTPVAVKSCRETLPPELKAKFLQEARILKQCNHPNIVRLIGVCTQK FT QPIYIVMELVQGGDFLSFLRSKGPRLKMKKLIKMMENAAAGMEYLESKHCIHRDLAARN FT CLVTEKNTLKISDFGMSRQEEDGVYASTGGMKQIPVKWTAPEALNYGWYSSESDVWSFG FT ILLWEAFSLGAVPYANLSNQQTREAIEQGVRLEPPEQCPEDVYRLMQRCWEYDPHRRPS FT FGAVHQDLIAIRKRHR" FT mat_peptide 380..835 FT /product="p14 MA" FT mat_peptide 899..1087 FT /product="p10" FT mat_peptide 1085..1309 FT /product="CA" FT mat_peptide 1307..3925 FT /product="FBS" FT 3'UTR 4196..4442 XX SQ Sequence 4788 BP; 1072 A; 1302 C; 1558 G; 856 T; 0 other; gccattttac cattcaccac attggtgtgc acctgggtag atggacagac cgttgagtcc 60 ctaacgattg cgaacacctg aatgaagcgg aaggcttcat ttggtgaccc cgacgtgatc 120 gttagggaat agtggtcggc cacaggcggc gtggcgatcc tgccctcatc cgtctcgctt 180 aatcggggag cggacgatga ccctagcaga gggggctgcg gcttaggagg gcagaagctg 240 agtgacgtcg gagggagctc cacggccggg ggccaagata acctaccgag aactcagaga 300 gtcgttggaa gacgggaagg aagcccaacg actgagcagt ccaccccagg cgtgattctg 360 gtcgcccggt ggatcaagca tggaagccgt cataaaggtg atttcgtccg cgtgtaaaac 420 ctattgcggg aaaacctctc cttctaagaa ggaaataggg gccatgttgt cccagttaca 480 aaaggaaggg ttgcttatgt ccctctcaga cttatattcc ccggggtcct gggatcccat 540 taccgcggca ctcacacagc gggcgatggt acttgggaaa tcgggagagt taaaaacctg 600 gggattggtt ttgggggcat tgaaggcggc ccgagaggaa caggttacat ctgagcaagc 660 aaagttttgg ttgggattag ggggagggag ggtctctccc ccaggtccgg agtgcatcga 720 gaaaccagca acggagcggc gaatcgacaa gggagaaaca actgtgcagc gagatacgaa 780 gatggcgccg gaggaaacgg ccacacctaa aaccgttggc acatcctgct atcattgcgg 840 aacagctatt ggctgtaatt gcgccacagc ctcggctcct cctcctcctt atgtggggag 900 tggtttgtat ccttccctgg cgggggtggg agagcagcag ggccaggggg gtgacacacc 960 tcggggggcg gaacagccaa gggcggagcc agggcgcacg ggtctggccc ctgggccggc 1020 cctgactgac tgggcaagga ttagggagga gcttgcgagt acaggtccgc ccatggtggc 1080 catgcctgta gtgattaaga cagagggacc cgcctggacc cctctggagc caaaattgat 1140 cgcaggacta gctggtgcgg tcggggccgg gggcttgcga tctccgatcg ctgtggcagg 1200 ggtggaggcg cttatgtcct ccccgctgct gccgcatgac gtcacgaatc caatgagagt 1260 tattttagga cccgccccac atgccttatg gatggacgct tgggctgcgt caggtcagtt 1320 gcaccggccc caaccccagg aacacaccag caccagcgct gcagcgggga cctggcggct 1380 cactcaggct tcggagtcgc ggcacaggct gccccactgc tctgcagccc catcccacca 1440 ggatcacagt gccatgggct ttgggccgga gctgtggtgc ccgaaggggc acactgagct 1500 gctgcggctg caggacagcg agttgcgcct cctggagctg atgaagaagt ggatgtcaca 1560 gcgtgctaag agcgaccggg agtacgcggg gatgctgcac cacatgttct ctcagctgga 1620 gaaacaggag ggcctgggac atctccgtgc caccgaccac agcagccaga tcggggagtc 1680 gtggtgggtt ctggcaagcc agactgagac actgagccag acgctgcggc ggcacgcgga 1740 ggagctggca gcggggccgc tggccaagct gagcatactg atccgtgaca agcagcagct 1800 tcgcaaggtc ttcagtgagc agtggcagca gctcagccag gagtacgcct ggaccacaca 1860 gcaggaagtt gagaagctga aggcacagta ccgcagcctg gtgcgtgaca gcacccaggc 1920 caagcgcaag taccaggagg ccagcaaaga caaggagcgg gaaaaggcga aggaaaagta 1980 cgtgcgcagc ctgtcgaagc tctatgcctt gcacaaccag tacgtgctgg ctgtgcaggc 2040 ggctgcgttg caccaccacc atcactacca gcgtgctctg cccaccctgc acgagtccct 2100 ctacagcctg cagcaggaga tggtccttgt tttgaaggag attcttgggg agtactgtag 2160 catcaccagt ctggtgcagg aggacgtgct ggccatccac cagaaggttg cccacgccgt 2220 cgagatgatc gaccccgcca ctgagtacag cagctttgtt cagtgccaca ggtacgactc 2280 tgaggtacca ccggcagtga cctttgatga gagcttgctg gaggaggcag agaacctgga 2340 gccaggggag ctgcagctga atgagctgac catcgagagc gtgcaacact ccctgacatc 2400 cattgaggag gagctgttgg ccagcaggaa ggcagtgagc agcaaggagc agcgggtgtg 2460 ggagctgcag gttgagctgc ggggcgagga gctggcactc agccctgggg agcgggtgca 2520 cttgctgggc aagcggcagg ggctgcggga ggcccagcag cagctgcagg gcttggtctg 2580 tgctcaggcc aagctgcagg cacagcggga tatgctggcc aacaagctgg cagagctggg 2640 ctctgaggag ccccctcccg ccttgcccct gcaggaggac cggcagtcag cgcgctccac 2700 ggatcaggag cgcagtgggg tgactgcgct gaagaccatc aagaaccaca tctcgggcat 2760 cttcagtccc aggttctcgc tgccacctcc cgtgcccctc atcccggagg tgcagaagcc 2820 gctgtgccag caggcctggt accacggggc catcccgcgc tcggaggtgc aggagctgct 2880 gaaatacagc ggagacttcc tggtgcggga gagccagggg aagcaggagt atgtgctcag 2940 cgtgctgtgg gatgggcagc cccggcactt catcatccag gctgctgaca acctgtacag 3000 gctggaagac gatggccttc ccaccatccc gctgctcatc gaccacctgc tgcagagcca 3060 gcggcccatc acccgcaaga gcggcatcgt cctgaccaga gccgtgctca aggacaagtg 3120 ggtgctcaac catgaggacg tgctgctggg ggagcgcatt ggccggggga acttcgggga 3180 ggtgttcagc ggccgcctgc gtgctgacaa cacccccgtg gcggtgaaat cctgccggga 3240 aaccctgccg cccgagctga aggccaagtt cctgcaggaa gccaggatcc tcaagcagtg 3300 caaccatccc aacatcgtcc ggctcatcgg cgtctgcacc cagaagcagc ccatttacat 3360 cgtcatggag ctggtgcagg gaggggactt cctgagcttc ctgcgcagca aggggccccg 3420 cctgaagatg aagaagctga tcaagatgat ggagaatgcc gcggcgggca tggagtacct 3480 ggaaagcaag cactgcatcc acagggacct ggctgcccgc aactgcctgg tgacagaaaa 3540 gaacaccctg aaaatcagcg actttgggat gtcgcggcag gaggaggatg gtgtctatgc 3600 ctccacgggg ggcatgaagc agatccccgt gaaatggact gcccccgagg ctctgaatta 3660 cggctggtac agctcggaga gcgacgtgtg gagctttggg atcctgctgt gggaagcctt 3720 cagcctgggc gccgtgccct acgccaacct cagcaaccag cagacgcgcg aggccatcga 3780 gcagggcgtg cggctggagc ccccggagca gtgccccgag gacgtgtacc gcctgatgca 3840 gcgctgctgg gagtacgacc ctcacaggcg gccgagcttc ggcgccgtcc accaggacct 3900 catcgccatc cgcaaacggc accgctgagc ggctgcgccc gcccgggcgg cggggccgga 3960 gagcggcggg gccggaggcg cggagggccg cggtgcgctg ctgcgaaata aaagtcggct 4020 ctgcggaaat ttgactgaga ttaggctttt gcgctgtttc gcgatgtacg ggtcaggagt 4080 gagtagtata actgagggga ccatggtatg tataggcgct aggcggggct tcggttgtac 4140 gcggttaggg gtcccctcag gaagtagtaa atgcgctttc gcatagggag ggggagatgt 4200 tgccagttag tcatcattgc cacttagtca tcattacata agacagtcta aagtcctaaa 4260 aaggaaaaac aagacatctc ggatgtcatt ggctgcaacc agtaaggaag tagtggcgtg 4320 aggatcaccc gatgggtgta acccagaagg ccattggtgg cagctgatgt cgtgatatca 4380 ccttatgggc aaggctaaag ctgtgcataa ctatataagc cattgtaacc ttctaataaa 4440 cgccatttta ccattcacca cattggtgtg cacctgggta gatggacaga ccgttgagtc 4500 cctaacgatt gcgaacacct gaatgaagcg gaaggcttca ttgatgttgc cagttagtca 4560 tcattgccac ttagtcatca ttacataaga cagtctaaag tcctaaaaag gaaaaacaag 4620 acatctcgga tgtcattggc tgcaaccagt aaggaagtag tggcgtgagg atcacccgat 4680 gggtgtaacc cagaaggcca ttggtggcag ctgatgtcgt gatatcacct tatgggcaag 4740 gctaaagctg tgcataacta tataagccat tgtaaccttc taataaac 4788 //