Dbfetch
ID AF029217; SV 1; circular; genomic DNA; STD; VRL; 2728 BP. XX AC AF029217; XX DT 02-DEC-1997 (Rel. 53, Created) DT 31-AUG-2025 (Rel. 144, Last updated, Version 8) XX DE Cowpea golden mosaic virus-[Nigeria] DNA-A, complete sequence. XX KW . XX OS Cowpea golden mosaic virus OC Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; OC Geplafuvirales; Geminiviridae; Begomovirus; Begomovirus vignamusivi. XX RN [1] RP 1-2728 RA Thottappilly G., Maxwell D.P., Kamal S., Winter S.; RT "Characterization and DNA sequences of two cowpea golden mosaic RT geminiviruses isolates from Nigeria"; RL Unpublished. XX RN [2] RP 1-2728 RA Thottappilly G., Maxwell D.P., Kamal S., Winter S.; RT ; RL Submitted (07-OCT-1997) to the INSDC. RL Biotechnology Research Unit, International Institute of Tropical RL Agriculture, Oyo Road, P.M.B 5320, Ibadan, Nigeria XX DR MD5; ef446ebf1459ffaea57ad51143988a2e. XX FH Key Location/Qualifiers FH FT source 1..2728 FT /organism="Cowpea golden mosaic virus" FT /chromosome="DNA-A" FT /isolate="Nsukka" FT /mol_type="genomic DNA" FT /note="collected in 1990 from Nsukka, Nigeria" FT /db_xref="taxon:69263" FT rep_origin join(1..14,2575..2728) FT CDS 113..451 FT /codon_start=1 FT /gene="v2" FT /product="precoat protein" FT /protein_id="AAB87605.1" FT /translation="MFNPLTEPLPVTPHGLMCMLALKYLQEFEKSVHLTPCDNTELLLL FT RRVIRARTYDEAKRRYHIFHTFQGSKEVDVRHPSCDSCVLRAFQQKAGLGEPAHEPQAH FT DVPALEES" FT gene 113..451 FT /gene="v2" FT CDS 276..1037 FT /codon_start=1 FT /gene="cp" FT /product="coat protein" FT /protein_id="AAB87606.1" FT /translation="MKRSADTIYSTPSKARRRLTFDTPRATPASLGRSNKRRAWENRPM FT NRKPMMYRLWRSPDVPYGCEGPCKVQSFEARHDVKHTGTFQCCSDVTRGMGLTHRVGKR FT FTIKTIGIWGKIWMDDNIKLKNHTNIVIFFLVRDRRPSGEPVSFGSLFNMFDNEPTTAT FT VKQEYRDRFQVMRRFHASVTGGQYASKEQALVKRFFRNINHRVVYNQQEGAEYKNHHEN FT ALMLYMACSHASNPVYATIKVRIYFYDSITN" FT gene 276..1037 FT /gene="cp" FT CDS complement(1034..1438) FT /codon_start=1 FT /gene="c3" FT /product="c3 protein" FT /note="putative role in enhancing DNA replication" FT /protein_id="AAB87609.1" FT /translation="MDLRTGESITAAQAQNGAYIWTVPNAIYFKVMSHHEWVMGLPFHE FT IVIRLQFNHNLRKALGIHKCWMTLTISTVLRSQTWRFLRVFKTQVMRYLDRLGVISINT FT CILACDHVLFDVIHGTIDVDPKYEIIFNLY" FT gene complement(1034..1438) FT /gene="c3" FT CDS complement(1179..1586) FT /codon_start=1 FT /gene="trap" FT /product="transcription activation protein" FT /protein_id="AAB87608.1" FT /translation="MQSSSTSPSRSTQIPIKVRHRIAKKKQIRRRRVDLTCGCSYYLAI FT ECANHGFTHRGVHHCSSSAEWRLYLDSPKCNIFQGDEPPRMGNGITVPRNSNSTPVQPQ FT PQESLGDSQMLDDIDYLNSLTESDLAFLESL" FT gene complement(1179..1586) FT /gene="trap" FT CDS complement(1516..2574) FT /codon_start=1 FT /gene="rep" FT /product="replication-associated protein" FT /protein_id="AAB87607.1" FT /translation="MPRSGAFRVNAKNIFATYPRCSLPKEEALELLRQIPTAVNKKFIK FT VARELHEDGEPHLHVLLQFEGKLQITNPRLFDLVSGNRSAVFHPNIQGAKSSSDVKSYI FT EKDGDTISWGEFQIDGRSSRGGQQSANDAYAAAINSGSPTKALNIVKELAPKDFVLHYH FT NIKSNLDRIFSKPLEPYSCPFRLNSFNNVPQIMKDWASINVVDAAARPDRPISIVIEGE FT SRTGKTMWARSLGAHNYLCGHLDLSPKVYSNNAWYNVIDDVDPHYLKHFKEFMGAQHDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPNSSYKSFLDEDKNKDLKQWALKNAIFVDISFPL FT YSNSNKSQTQNS" FT gene complement(1516..2574) FT /gene="rep" FT CDS complement(2124..2417) FT /codon_start=1 FT /gene="c4" FT /product="c4 protein" FT /function="unknown" FT /protein_id="AAB87610.1" FT /translation="MGNLICTYCYNSKVSSRSQIQDCSTLSLETDLPCFIQTFREQNRA FT PTSSPISRRMETPSHGANSRSMEDLAEEDNNQPTTLTPQQLTLEVRRRLSTL" FT gene complement(2124..2417) FT /gene="c4" XX SQ Sequence 2728 BP; 670 A; 593 C; 623 G; 842 T; 0 other; acctgagggc cgctttcggt gtaccccacg caccaatcag gatgcgccat ttgcgcttat 60 ttattaactg ggcctctata tattgggctt tgttgtgtat tggatttgca ccatgtttaa 120 cccactaact gaacccctcc cagttactcc tcacggtttg atgtgtatgt tggctttgaa 180 atatttgcag gagttcgaga aatctgtaca tttgactccg tgtgataata ctgagttgtt 240 gttactccgc cgtgttattc gtgcaaggac ttacgatgaa gcgaagcgcc gataccatat 300 attccacacc ttccaaggct cgaaggaggt tgacgttcga cacccctcgt gcgactcctg 360 cgtccttagg gcgttccaac aaaaggcggg cttgggagaa ccggcccatg aaccgcaagc 420 ccatgatgta ccggctttgg aggagtcctg atgttccgta tggttgtgag ggtccatgta 480 aggttcagtc tttcgaggcc agacacgacg tcaaacacac gggaactttt cagtgttgtt 540 cagacgttac tcggggaatg ggtttgactc atcgcgttgg gaagcgtttc accataaaga 600 ctatcggtat ctggggcaag atctggatgg atgataacat caagttgaag aaccacacta 660 acatagtcat ctttttctta gtgcgtgacc ggcgtcctag tggagaacca gtttcttttg 720 gaagtttgtt taatatgttc gataacgagc caactacggc cactgtgaag caagaatatc 780 gtgatcgttt tcaggttatg aggaggtttc atgcatctgt taccggtgga cagtacgctt 840 caaaggaaca ggcgttggtt aagcgttttt tcaggaacat taatcatcga gttgtttaca 900 accaacaaga aggcgcagag tacaagaatc atcatgaaaa tgctttgatg ttgtatatgg 960 catgtagtca tgcctctaat cctgtgtacg cgacaattaa agttcgcatt tatttttacg 1020 actccattac gaattaataa agattgaata ttatttcata ttttgggtct acatcaattg 1080 ttccatgaat tacatcaaac aacacatgat cgcacgctaa aatacatgta ttaattgaaa 1140 tgacacctaa tctatctaaa taacgcataa cttgtgtttt aaagactctc aagaaacgcc 1200 aggtctgact ccgtaagact gttgagatag tcaatgtcat ccagcatttg tgaatcccca 1260 aggctttcct gaggttgtgg ttgaactgga gtcgaattac tatttcgtgg aacggtaatc 1320 ccattaccca ttcgtggtgg ctcatcacct tgaaatatat tgcatttggg actgtccaga 1380 tataggcgcc attctgcgct tgagctgcag tgatggactc ccctgtgcgt aaatccatgg 1440 ttggcacact ctattgcgag gtagtatgaa caaccacagg ttaaatcaac tcgtcggcgc 1500 ctgatctgtt tctttttagc tattctgtgt ctgactttta ttggaatttg agtagagcgg 1560 gaaggagatg tcgacgaaga ttgcattctt taatgcccac tgctttaaat ctttattttt 1620 atcttcatcc aagaagcttt tataggagct atttggtcct ggattgcaga ggaagatagt 1680 gggaattcct cctttaattt gaattggttt cccgtacttt gtgttgcttt gccaatcgtg 1740 ctgggcaccc atgaattctt taaagtgctt tagatagtgc ggatcgacgt catcgatgac 1800 gttataccag gcattattgc tatacacttt tggacttagg tccagatgac cgcataggta 1860 attgtgcgca cctaatgatc tggcccacat tgttttccct gttcttgact ccccttcaat 1920 gactatgcta atcggtctat ccggccgcgc agcggcatcc accacgttga ttgacgccca 1980 atctttcatg atctgaggaa cgttattgaa tgagtttaac ctaaacggac aagaataggg 2040 ctctaatggc ttactgaaaa tgcgatctaa gttgctttta atgttgtggt aatgtaagac 2100 gaagtccttc ggagcaagtt ctttcacaat gttgagagcc ttcgtcggac ttccagagtt 2160 aattgctgcg gcgtaagcgt cgttggctga ttgttgtcct cctcggctag atcttccatc 2220 gatctggaat tcgccccatg agatggtgtc tccatccttc tcgatatagg acttgacgtc 2280 ggagctcgat tttgctccct gaatgtttgg atgaaacacg gcagatctgt ttccagagac 2340 aaggtcgaac agtcttggat ttgtgatctg gagcttacct tcgaattgta gcagtacgtg 2400 cagatgaggt tccccatctt cgtgtaattc ccttgctacc ttgatgaatt tcttattgac 2460 ggctgttggt atctgccgga gaagctctag ggcttcctct ttcggaagag agcatctggg 2520 ataagtggcg aaaatgtttt tggcattcac tctaaacgct ccgctgcgtg gcatatttgc 2580 aattcttgcg tttacaccga ttgctctcaa aatcttttat cgcatatatt ggtgtaacgg 2640 ggtacctaat atactatata ccccaataca cctggtagtg acatctgtcc ctagtcccca 2700 cacctttagc ggccctcagt ataatatt 2728 //