ID AF028704; SV 1; linear; genomic DNA; STD; VRL; 4683 BP. XX AC AF028704; XX DT 14-JAN-1998 (Rel. 54, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 3) XX DE Adeno-associated virus 6, complete genome. XX KW . XX OS Adeno-associated virus - 6 OC Viruses; Parvoviridae; Parvovirinae; Dependoparvovirus. XX RN [1] RP 1-4683 RX PUBMED; 9420229. RA Rutledge E.A., Halbert C.L., Russell D.W.; RT "Infectious clones and vectors derived from adeno-associated virus (AAV) RT serotypes other than AAV type 2"; RL J. Virol. 72(1):309-319(1998). XX RN [2] RP 1-4683 RA Rutledge E.A., Russell D.W.; RT ; RL Submitted (24-SEP-1997) to the INSDC. RL Hematology, Univ. of Washington, Box 357720, Seattle, WA 98195, USA XX DR MD5; 569e2240c8d4a7ffd79c2349c6db9645. DR EuropePMC; PMC109378; 9420229. DR EuropePMC; PMC115897; 11222696. DR EuropePMC; PMC2293646; 18035387. DR EuropePMC; PMC3209379; 21917944. DR EuropePMC; PMC4461464; 25838114. DR EuropePMC; PMC5983388; 29742436. DR EuropePMC; PMC6279885; 30534580. XX FH Key Location/Qualifiers FH FT source 1..4683 FT /organism="Adeno-associated virus - 6" FT /mol_type="genomic DNA" FT /note="AAV6" FT /db_xref="taxon:68558" FT CDS 320..2191 FT /codon_start=1 FT /product="nonstructural protein Rep78" FT /db_xref="GOA:O56136" FT /db_xref="InterPro:IPR001257" FT /db_xref="InterPro:IPR014015" FT /db_xref="InterPro:IPR014835" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:O56136" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="AAB95449.1" FT /translation="MPGFYEIVIKVPSDLDEHLPGISDSFVNWVAEKEWELPPDSDMDL FT NLIEQAPLTVAEKLQRDFLVQWRRVSKAPEALFFVQFEKGESYFHLHILVETTGVKSMV FT LGRFLSQIRDKLVQTIYRGIEPTLPNWFAVTKTRNGAGGGNKVVDECYIPNYLLPKTQP FT ELQWAWTNMEEYISACLNLAERKRLVAHDLTHVSQTQEQNKENLNPNSDAPVIRSKTSA FT RYMELVGWLVDRGITSEKQWIQEDQASYISFNAASNSRSQIKAALDNAGKIMALTKSAP FT DYLVGPAPPADIKTNRIYRILELNGYDPAYAGSVFLGWAQKRFGKRNTIWLFGPATTGK FT TNIAEAIAHAVPFYGCVNWTNENFPFNDCVDKMVIWWEEGKMTAKVVESAKAILGGSKV FT RVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQDRMFKFELTRRLEHDF FT GKVTKQEVKEFFRWAQDHVTEVAHEFYVRKGGANKRPAPDDADKSEPKRACPSVADPST FT SDAEGAPVDFADRYQNKCSRHAGMLQMLFPCKTCERMNQNFNICFTHGTRDCSECFPGV FT SESQPVVRKRTYRKLCAIHHLLGRAPEIACSACDLVNVDLDDCVSEQ" FT CDS 2208..4418 FT /codon_start=1 FT /product="capsid protein VP1" FT /db_xref="GOA:O56137" FT /db_xref="InterPro:IPR001403" FT /db_xref="InterPro:IPR013607" FT /db_xref="InterPro:IPR016184" FT /db_xref="InterPro:IPR036952" FT /db_xref="PDB:3OAH" FT /db_xref="PDB:3SHM" FT /db_xref="PDB:4V86" FT /db_xref="UniProtKB/TrEMBL:O56137" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="AAB95450.1" FT /translation="MAADGYLPDWLEDNLSEGIREWWDLKPGAPKPKANQQKQDDGRGL FT VLPGYKYLGPFNGLDKGEPVNAADAAALEHDKAYDQQLKAGDNPYLRYNHADAEFQERL FT QEDTSFGGNLGRAVFQAKKRVLEPFGLVEEGAKTAPGKKRPVEQSPQEPDSSSGIGKTG FT QQPAKKRLNFGQTGDSESVPDPQPLGEPPATPAAVGPTTMASGGGAPMADNNEGADGVG FT NASGNWHCDSTWLGDRVITTSTRTWALPTYNNHLYKQISSASTGASNDNHYFGYSTPWG FT YFDFNRFHCHFSPRDWQRLINNNWGFRPKRLNFKLFNIQVKEVTTNDGVTTIANNLTST FT VQVFSDSEYQLPYVLGSAHQGCLPPFPADVFMIPQYGYLTLNNGSQAVGRSSFYCLEYF FT PSQMLRTGNNFTFSYTFEDVPFHSSYAHSQSLDRLMNPLIDQYLYYLNRTQNQSGSAQN FT KDLLFSRGSPAGMSVQPKNWLPGPCYRQQRVSKTKTDNNNSNFTWTGASKYNLNGRESI FT INPGTAMASHKDDKDKFFPMSGVMIFGKESAGASNTALDNVMITDEEEIKATNPVATER FT FGTVAVNLQSSSTDPATGDVHVMGALPGMVWQDRDVYLQGPIWAKIPHTDGHFHPSPLM FT GGFGLKHPPPQILIKNTPVPANPPAEFSATKFASFITQYSTGQVSVEIEWELQKENSKR FT WNPEVQYTSNYAKSANVDFTVDNNGLYTEPRPIGTRYLTRPL" XX SQ Sequence 4683 BP; 1114 A; 1363 C; 1277 G; 929 T; 0 other; ttggccactc cctctctgcg cgctcgctcg ctcactgagg ccgggcgacc aaaggtcgcc 60 cgacgcccgg gctttgcccg ggcggcctca gtgagcgagc gagcgcgcag agagggagtg 120 gccaactcca tcactagggg ttcctggagg ggtggagtcg tgacgtgaat tacgtcatag 180 ggttagggag gtcctgtatt agaggtcacg tgagtgtttt gcgacatttt gcgacaccat 240 gtggtcacgc tgggtattta agcccgagtg agcacgcagg gtctccattt tgaagcggga 300 ggtttgaacg cgcagcgcca tgccggggtt ttacgagatt gtgattaagg tccccagcga 360 ccttgacgag catctgcccg gcatttctga cagctttgtg aactgggtgg ccgagaagga 420 atgggagttg ccgccagatt ctgacatgga tctgaatctg attgagcagg cacccctgac 480 cgtggccgag aagctgcagc gcgacttcct ggtccagtgg cgccgcgtga gtaaggcccc 540 ggaggccctc ttctttgttc agttcgagaa gggcgagtcc tacttccacc tccatattct 600 ggtggagacc acgggggtca aatccatggt gctgggccgc ttcctgagtc agattaggga 660 caagctggtg cagaccatct accgcgggat cgagccgacc ctgcccaact ggttcgcggt 720 gaccaagacg cgtaatggcg ccggaggggg gaacaaggtg gtggacgagt gctacatccc 780 caactacctc ctgcccaaga ctcagcccga gctgcagtgg gcgtggacta acatggagga 840 gtatataagc gcgtgtttaa acctggccga gcgcaaacgg ctcgtggcgc acgacctgac 900 ccacgtcagc cagacccagg agcagaacaa ggagaatctg aaccccaatt ctgacgcgcc 960 tgtcatccgg tcaaaaacct ccgcacgcta catggagctg gtcgggtggc tggtggaccg 1020 gggcatcacc tccgagaagc agtggatcca ggaggaccag gcctcgtaca tctccttcaa 1080 cgccgcctcc aactcgcggt cccagatcaa ggccgctctg gacaatgccg gcaagatcat 1140 ggcgctgacc aaatccgcgc ccgactacct ggtaggcccc gctccgcccg ccgacattaa 1200 aaccaaccgc atttaccgca tcctggagct gaacggctac gaccctgcct acgccggctc 1260 cgtctttctc ggctgggccc agaaaaggtt cggaaaacgc aacaccatct ggctgtttgg 1320 gccggccacc acgggcaaga ccaacatcgc ggaagccatc gcccacgccg tgcccttcta 1380 cggctgcgtc aactggacca atgagaactt tcccttcaac gattgcgtcg acaagatggt 1440 gatctggtgg gaggagggca agatgacggc caaggtcgtg gagtccgcca aggccattct 1500 cggcggcagc aaggtgcgcg tggaccaaaa gtgcaagtcg tccgcccaga tcgatcccac 1560 ccccgtgatc gtcacctcca acaccaacat gtgcgccgtg attgacggga acagcaccac 1620 cttcgagcac cagcagccgt tgcaggaccg gatgttcaaa tttgaactca cccgccgtct 1680 ggagcatgac tttggcaagg tgacaaagca ggaagtcaaa gagttcttcc gctgggcgca 1740 ggatcacgtg accgaggtgg cgcatgagtt ctacgtcaga aagggtggag ccaacaagag 1800 acccgccccc gatgacgcgg ataaaagcga gcccaagcgg gcctgcccct cagtcgcgga 1860 tccatcgacg tcagacgcgg aaggagctcc ggtggacttt gccgacaggt accaaaacaa 1920 atgttctcgt cacgcgggca tgcttcagat gctgtttccc tgcaaaacat gcgagagaat 1980 gaatcagaat ttcaacattt gcttcacgca cgggaccaga gactgttcag aatgtttccc 2040 cggcgtgtca gaatctcaac cggtcgtcag aaagaggacg tatcggaaac tctgtgccat 2100 tcatcatctg ctggggcggg ctcccgagat tgcttgctcg gcctgcgatc tggtcaacgt 2160 ggatctggat gactgtgttt ctgagcaata aatgacttaa accaggtatg gctgccgatg 2220 gttatcttcc agattggctc gaggacaacc tctctgaggg cattcgcgag tggtgggact 2280 tgaaacctgg agccccgaaa cccaaagcca accagcaaaa gcaggacgac ggccggggtc 2340 tggtgcttcc tggctacaag tacctcggac ccttcaacgg actcgacaag ggggagcccg 2400 tcaacgcggc ggatgcagcg gccctcgagc acgacaaggc ctacgaccag cagctcaaag 2460 cgggtgacaa tccgtacctg cggtataacc acgccgacgc cgagtttcag gagcgtctgc 2520 aagaagatac gtcttttggg ggcaacctcg ggcgagcagt cttccaggcc aagaagaggg 2580 ttctcgaacc ttttggtctg gttgaggaag gtgctaagac ggctcctgga aagaaacgtc 2640 cggtagagca gtcgccacaa gagccagact cctcctcggg cattggcaag acaggccagc 2700 agcccgctaa aaagagactc aattttggtc agactggcga ctcagagtca gtccccgacc 2760 cacaacctct cggagaacct ccagcaaccc ccgctgctgt gggacctact acaatggctt 2820 caggcggtgg cgcaccaatg gcagacaata acgaaggcgc cgacggagtg ggtaatgcct 2880 caggaaattg gcattgcgat tccacatggc tgggcgacag agtcatcacc accagcaccc 2940 gaacatgggc cttgcccacc tataacaacc acctctacaa gcaaatctcc agtgcttcaa 3000 cgggggccag caacgacaac cactacttcg gctacagcac cccctggggg tattttgatt 3060 tcaacagatt ccactgccat ttctcaccac gtgactggca gcgactcatc aacaacaatt 3120 ggggattccg gcccaagaga ctcaacttca agctcttcaa catccaagtc aaggaggtca 3180 cgacgaatga tggcgtcacg accatcgcta ataaccttac cagcacggtt caagtcttct 3240 cggactcgga gtaccagttg ccgtacgtcc tcggctctgc gcaccagggc tgcctccctc 3300 cgttcccggc ggacgtgttc atgattccgc agtacggcta cctaacgctc aacaatggca 3360 gccaggcagt gggacggtca tccttttact gcctggaata tttcccatcg cagatgctga 3420 gaacgggcaa taactttacc ttcagctaca ccttcgagga cgtgcctttc cacagcagct 3480 acgcgcacag ccagagcctg gaccggctga tgaatcctct catcgaccag tacctgtatt 3540 acctgaacag aactcagaat cagtccggaa gtgcccaaaa caaggacttg ctgtttagcc 3600 gggggtctcc agctggcatg tctgttcagc ccaaaaactg gctacctgga ccctgttacc 3660 ggcagcagcg cgtttctaaa acaaaaacag acaacaacaa cagcaacttt acctggactg 3720 gtgcttcaaa atataacctt aatgggcgtg aatctataat caaccctggc actgctatgg 3780 cctcacacaa agacgacaaa gacaagttct ttcccatgag cggtgtcatg atttttggaa 3840 aggagagcgc cggagcttca aacactgcat tggacaatgt catgatcaca gacgaagagg 3900 aaatcaaagc cactaacccc gtggccaccg aaagatttgg gactgtggca gtcaatctcc 3960 agagcagcag cacagaccct gcgaccggag atgtgcatgt tatgggagcc ttacctggaa 4020 tggtgtggca agacagagac gtatacctgc agggtcctat ttgggccaaa attcctcaca 4080 cggatggaca ctttcacccg tctcctctca tgggcggctt tggacttaag cacccgcctc 4140 ctcagatcct catcaaaaac acgcctgttc ctgcgaatcc tccggcagag ttttcggcta 4200 caaagtttgc ttcattcatc acccagtatt ccacaggaca agtgagcgtg gagattgaat 4260 gggagctgca gaaagaaaac agcaaacgct ggaatcccga agtgcagtat acatctaact 4320 atgcaaaatc tgccaacgtt gatttcactg tggacaacaa tggactttat actgagcctc 4380 gccccattgg cacccgttac ctcacccgtc ccctgtaatt gtgtgttaat caataaaccg 4440 gttaattcgt gtcagttgaa ctttggtctc atgtcgttat tatcttatct ggtcaccata 4500 gcaaccggtt acacattaac tgcttagttg cgcttcgcga atacccctag tgatggagtt 4560 gcccactccc tctatgcgcg ctcgctcgct cggtggggcc ggcagagcag agctctgccg 4620 tctgcggacc tttggtccgc aggccccacc gagcgagcga gcgcgcatag agggagtggg 4680 caa 4683 //