ID AF024715; SV 2; circular; genomic DNA; STD; VRL; 2781 BP. XX AC AF024715; XX DT 01-NOV-1997 (Rel. 53, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 5) XX DE Tomato yellow leaf curl virus-[Dominican Republic], infectious clone, DE complete genome. XX KW . XX OS Tomato yellow leaf curl virus-[Dominican Republic] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2781 RA Nakhla M.K., Maxwell D.P., Martinez R.T., Carvalho M.G., Gilbertson R.L.; RT "Widespread Occurrence of the Eastern Mediterranean Strain of Tomato Yellow RT Leaf Curl Geminivirus in Tomatoes in the Dominican Republic"; RL Plant Dis. 78:926-926(1994). XX RN [2] RP 1-2781 RA Salati R., Nakhla M.K., Maxwell D.P., Carvalho M.G., Hou Y.M., RA Gilbertson R.L.; RT "Complete nucleotide sequence of an infectious clone of tomato yellow leaf RT curl geminivirus from the Dominican Republic"; RL Phytopathology 87:S84-S84(1997). XX RN [3] RP 1-2781 RA Salati R., Nakhla M.K., Maxwell D.P., Carvalho M.G., Hou Y.M., RA Gilbertson R.L.; RT ; RL Submitted (14-SEP-1997) to the INSDC. RL Plant Pathology, UCDavis, Department of Plant Pathology, Davis, CA 95616, RL USA XX RN [4] RC Sequence update by submitter RP 1-2781 RA Salati R., Nakhla M.K., Maxwell D.P., Carvalho M.G., Hou Y.M., RA Gilbertson R.L.; RT ; RL Submitted (03-SEP-1999) to the INSDC. RL Plant Pathology, UCDavis, Department of Plant Pathology, Davis, CA 95616, RL USA XX DR MD5; 5e35b14b24ad48b1c33c2641d28c1f0d. DR EuropePMC; PMC1181577; 16014949. DR EuropePMC; PMC2074955; 17827315. DR EuropePMC; PMC2224568; 17977971. DR EuropePMC; PMC4091138; 19264617. DR EuropePMC; PMC5725698; 28901681. XX CC On Sep 3, 1999 this sequence version replaced gi:2558948. XX FH Key Location/Qualifiers FH FT source 1..2781 FT /organism="Tomato yellow leaf curl virus-[Dominican FT Republic]" FT /isolate="Dominican Republic isolate" FT /mol_type="genomic DNA" FT /note="Whitefly transmitted; infectious clone" FT /db_xref="taxon:220941" FT CDS 148..498 FT /codon_start=1 FT /gene="V2" FT /product="V2" FT /note="pre-coat protein" FT /db_xref="GOA:Q77YV0" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q77YV0" FT /protein_id="AAD09394.1" FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLIRDL FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV FT PKAQNIQNVSKP" FT CDS 308..1084 FT /codon_start=1 FT /gene="V1" FT /product="V1" FT /note="coat protein" FT /db_xref="GOA:O38541" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:O38541" FT /protein_id="AAD09393.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSNRAAVPIVQGTNKRRSW FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGVVRCVSDVTRGSGITH FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGSSPMDFGQVFNMFDN FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFKINSHVTYNHQEAAKYE FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN" FT CDS complement(1081..1485) FT /codon_start=1 FT /gene="C3" FT /product="C3" FT /db_xref="GOA:O38542" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:O38542" FT /protein_id="AAD09397.1" FT /translation="MDSRTGELITAPQAENGVFIWEINNPLYFKITDHSQRPFLMNHDI FT ISIQIRFNHNIRKVMGIHKCFLNFRIWTTLQPQTGRFLRVSRYEVLKYLDSLGVISINN FT VIRAVDHVLYDVLENTINVTETHDIKYKFY" FT CDS complement(1226..1633) FT /codon_start=1 FT /gene="C2" FT /product="C2" FT /db_xref="GOA:O38543" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:O38543" FT /protein_id="AAD09396.1" FT /translation="MQPSSPSTSHCSQVSIKVQHKIAKKKPIRRKRVDLDCGCSYYLHL FT NCNNHGFTHRGTHHCSSGREWRFYLGDKQSPLFQDNRPQPEAISNEPRHHFHSDKIQPQ FT HQEGNGDSQMFSQLPNLDDITASDWSFLKSI" FT CDS complement(1542..2615) FT /codon_start=1 FT /gene="C1" FT /product="C1" FT /note="replication associated protein" FT /db_xref="GOA:O38544" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:O38544" FT /protein_id="AAD09395.1" FT /translation="MPRLFKIYAKNYFLTYPNCSLSKEEALSQLKNIETPTNKKYIKVC FT REFHENGEPHLHVLIQFEGKYQCKNQRFFDLVSPNRSAHFHPNIQAAKSSTDVKTYVEK FT DGDFIDFGVFQIDGRSARGGQQSANDAYAEALNSGSKSEALNILKEKAPKDYILQFHNL FT SSNLDRIFNPPLEVYVSPFLSSSFNQVPDELEEWVAENVVYSAARPWRPISIVIEGDSR FT TGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQMDWQS FT NTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNATFVTLYEPLFA FT SINQGPTQDSQEETNKA" FT CDS complement(2171..2464) FT /codon_start=1 FT /gene="C4" FT /product="C4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:O38545" FT /protein_id="AAD09398.1" FT /translation="MGNHISMCLSNSKANTNVRTNGSSTWYPQTGQHISIQTFRQLRAQ FT QMSRPTWRKTETSLILEFSKSMADQLEEVSNLPTTHMPKHSIQAVNPRPSIY" XX SQ Sequence 2781 BP; 757 A; 534 C; 605 G; 885 T; 0 other; accggatggc cgcgcctttt ccttttatgt ggtccccacg agggttacac agacgtcact 60 gtcaaccaat caaattgcat cctcaaacgt tagataagtg ttcatttgtc tttatatact 120 tggtccccaa gtattttgtc ttgcaatatg tgggacccac ttctaaatga atttcctgaa 180 tctgttcacg gatttcgttg tatgttagct attaaatatt tgcagtccgt tgaggaaact 240 tacgagccca atacattggg ccacgattta attagggatc ttatatctgt tgtaagggcc 300 cgtgactatg tcgaagcgac caggcgatat aatcatttcc acgcccgtct cgaaggttcg 360 ccgaaggctg aacttcgaca gcccatacag caaccgtgct gctgtcccca ttgtccaagg 420 cacaaacaag cgacgatcat ggacgtacag gcccatgtac cgaaagccca gaatatacag 480 aatgtatcga agccctgatg ttccccgtgg atgtgaaggc ccatgtaaag tccagtctta 540 tgagcagcgg gatgatatta agcacactgg tgttgttcgt tgtgttagtg atgttactcg 600 tggatctgga attactcaca gagtcggtaa gaggttctgt gttaaatcga tatatttttt 660 aggtaaagtc tggatggatg aaaatatcaa gaagcagaat cacactaatc aggtcatgtt 720 ctttttggtc cgtgatagaa ggccctatgg aagcagtcca atggattttg gacaggtttt 780 taatatgttc gataatgagc ccagtaccgc aactgtgaag aatgatttgc gtgataggtt 840 tcaagtgatg aggaaatttc atgctacagt tattggtggg ccctctggaa tgaaggaaca 900 ggcattagtt aagagatttt ttaaaattaa cagtcatgta acttataatc atcaggaggc 960 agccaagtac gagaaccata ctgaaaacgc cttgttattg tatatggcat gtacgcatgc 1020 ctctaatcca gtgtatgcaa ctatgaaaat acgcatctat ttctatgatt caatatcaaa 1080 ttaataaaat ttatatttta tatcatgagt ttctgttaca tttattgtgt tttcaagtac 1140 atcatacaat acatgatcca ctgctctgat tacattgtta atggaaatta caccaagact 1200 atctaaatac ttaagaactt catatctaga tactcttaag aaacgaccag tctgaggctg 1260 taatgtcgtc caaattcgga agttgagaaa acatttgtga atccccatta ccttcctgat 1320 gttgtggttg aatcttatct gaatggaaat gatgtcgtgg ttcattagaa atggcctctg 1380 gctgtggtct gttatcttga aatagagggg attgtttatc tcccagataa aaacgccatt 1440 ctctgcctga ggagcagtga tgagttcccc tgtgcgtgaa tccatgatta ttgcagttga 1500 ggtggaggta gtatgagcag ccacagtcta ggtctacacg cttacgcctt attggtttct 1560 tcttggctat cttgtgttgg accttgattg atacttgcga acagtggctc gtagagggtg 1620 acgaaggttg cattcttgag agcccaattt ttcaaggata tgtttttttc ttcgtctaga 1680 tattccctat atgaggaggt aggtcctgga ttgcagagga agatagtggg aattccccct 1740 ttaatttgaa tgggcttccc gtactttgtg ttgctttgcc agtccatctg ggcccccatg 1800 aattccttga agtgctttaa atagtgcggg tctacgtcat caatgacgtt gtaccacgca 1860 tcattactgt acacctttgg gcttaggtct agatgtccac ataaataatt atgtgggcct 1920 aaagacctgg cccacattgt tttgcctgtt ctgctatcac cctcaatgac aatacttatg 1980 ggtctccatg gccgcgcagc ggaatacacg acattctcgg cgacccactc ttcaagttca 2040 tctggaactt gattaaaaga agaagaaaga aatggagaaa cataaacttc taaaggagga 2100 ttaaaaatcc tatctaaatt tgaacttaaa ttatgaaatt gtaaaatata gtcctttggg 2160 gccttttctt ttaatatatt gagggcctcg gatttactgc ctgaattgag tgcttcggca 2220 tatgcgtcgt tggcagattg ctgacctcct ctagctgatc tgccatcgat ttggaaaact 2280 ccaaaatcaa tgaagtctcc gtctttctcc acgtaggtct tgacatctgt tgagctctta 2340 gctgcctgaa tgtttggatg gaaatgtgct gacctgtttg gggataccag gtcgaagaac 2400 cgttggttct tacattggta tttgccttcg aattggataa gcacatggag atgtggttcc 2460 ccattctcgt ggaattctct gcaaactttg atgtattttt tatttgttgg ggtttctatg 2520 ttttttaatt gggaaagtgc ttcctcttta gagagagaac aattgggata tgttaggaaa 2580 taatttttgg catatatttt aaataaacga ggcatgttga aatgaatcgg tgtccctcaa 2640 agctctatgg caatcggtgt atcggtgtct tacttatacc tggacaccta atggctattt 2700 ggtaatttca taaatgttca ttgcaattca aaattcaaaa ttcaaaaatc aaatcattaa 2760 agcggtcatc cgtataatat t 2781 //