ID AF020617; SV 1; linear; genomic RNA; STD; VRL; 2835 BP. XX AC AF020617; XX DT 06-NOV-1997 (Rel. 53, Created) DT 06-NOV-1997 (Rel. 53, Last updated, Version 1) XX DE Carrot red leaf luteovirus associated RNA clone a25 putative RNA dependent DE RNA polymerase, complete cds. XX KW . XX OS Carrot red leaf luteovirus associated RNA OC Viruses; Riboviria; unclassified Riboviria; unclassified ssRNA viruses; OC unclassified ssRNA positive-strand viruses. XX RN [1] RP 1-2835 RA Watson M.T., Tian T., Estabrook E., Falk B.W.; RT "A small RNA identified as a component of California carrot motley dwarf RT resembles the beet western yellows luteovirus AT9-associated RNA"; RL Unpublished. XX RN [2] RP 1-2835 RA Watson M.T., Tian T., Estabrook E., Falk B.W.; RT ; RL Submitted (25-AUG-1997) to the INSDC. RL Plant Pathology, University of California, Davis, 1 Shields Ave., Davis, CA RL 95616, USA XX DR MD5; 1e1c4b4ef1d8c570d66f8ba7b2bbd7c5. XX FH Key Location/Qualifiers FH FT source 1..2835 FT /organism="Carrot red leaf luteovirus associated RNA" FT /strain="California" FT /mol_type="genomic RNA" FT /clone="a25" FT /db_xref="taxon:67962" FT CDS 25..2298 FT /codon_start=1 FT /transl_except=(pos:709..711,aa:OTHER) FT /product="putative RNA dependent RNA polymerase" FT /note="ORF 1b; results from readthrough of stop codon" FT /db_xref="GOA:O37364" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:O37364" FT /protein_id="AAB82546.1" FT /translation="MTNLNIESLVETQPAVSKLVGLLPKLSSRLIDAAKVPATCGLVVA FT AGLGLYAYRKVCINRLEFSRENTTPRPTDCIEDVLEAEEDAVTCLALTKIAKEAAMEAA FT LNPGEITERVREAAKINAQPSTDPLAKRKTRLRPNKTGQFIRVLRAEIKSQMGTPTITA FT ANEAVIRHMISKFCASHNIRTTSYAHLVSRVVREVMTPYPGDAEEVERASSVVNRIHNW FT LVQYRKXGGLELARGFTHEAVCTDVPGLDATNLGDSRPLTDTNIRRVVGPVSSDYDIVF FT YTNSRNNLMRGLVNRVLTYKGGPVLEPSPGAWKSLRGLATSLGNRCLTTPLSPDEFLAC FT YVGRKRTIYAKAIESFKTKPWDARKDMIVKAFIKKEKDKLVDESCDPRIIQPRTPRFVT FT RFGRYVRAIEKRLYSEWTKSFSSFTVTNTPVCLKGMNYRTRARALLEKWQSFDSPVAVC FT LDASRFDLHVSVDALKFTDQIYLSAFTGIDRSELKEILRNRHKTTGFATFKEGTFHYEK FT VGGRCSGDSDTSLGNVSIMLAITRVICEGLKGIHIEVANDGDDQVLMVETNQLDNLVKE FT LSPTFARFGFRVKVEDPVWEFERIDFCQTRPIFLSPGEPIMCRYPMQSMSKDVASFLNI FT ERSEGWKYMLRAIGACGSSSFSQVPVLGEFYSALSSTSNKDETKWWRRTGVDLGFKQLT FT NNVGTIPYDEVTARSSFYKAFGILPDTQAALESKIRNWNMSSVPHIEQVHKFSSEFPVV FT DGWA" FT CDS 25..711 FT /codon_start=1 FT /product="unknown protein" FT /note="ORF 1a" FT /db_xref="UniProtKB/TrEMBL:O37365" FT /protein_id="AAB82545.1" FT /translation="MTNLNIESLVETQPAVSKLVGLLPKLSSRLIDAAKVPATCGLVVA FT AGLGLYAYRKVCINRLEFSRENTTPRPTDCIEDVLEAEEDAVTCLALTKIAKEAAMEAA FT LNPGEITERVREAAKINAQPSTDPLAKRKTRLRPNKTGQFIRVLRAEIKSQMGTPTITA FT ANEAVIRHMISKFCASHNIRTTSYAHLVSRVVREVMTPYPGDAEEVERASSVVNRIHNW FT LVQYRK" FT CDS 2673..2792 FT /codon_start=1 FT /product="unknown protein" FT /note="ORF 2" FT /db_xref="UniProtKB/TrEMBL:O37366" FT /protein_id="AAB82547.1" FT /translation="MLGVYGIVDGGNYRGGYAPSYYPSVKLPHDTTSKPEWGR" XX SQ Sequence 2835 BP; 795 A; 684 C; 746 G; 610 T; 0 other; gggatttagc attcactagc gaacatgacg aatctcaaca ttgagtcgct agtggaaacc 60 cagccagcag tatccaagtt agttggatta ctgcctaaat taagttctag attaatagac 120 gcggccaaag tgccagcgac ctgcggcctc gtagtggccg caggattagg attgtacgca 180 taccggaagg tatgcataaa tagattagaa tttagtaggg agaacactac cccgcggccc 240 acggactgta tagaagacgt gctggaggcc gaagaggatg ccgtaacgtg cctagcactt 300 acgaagatcg ctaaagaggc agcgatggaa gcagctctaa acccgggcga aatcacagaa 360 agggttagag aagctgccaa aataaacgcc caaccctcca ccgatcctct tgccaagagg 420 aaaactagat tgcggcctaa caaaacaggc caattcataa gggtgttgag ggccgaaata 480 aagtcccaga tggggacccc cactataact gcggccaacg aagctgtgat aaggcacatg 540 ataagcaagt tctgtgcatc acacaacata cgtacgacat cgtacgccca cctggtttcc 600 agggtggtta gggaggttat gaccccctac cccggagacg ctgaagaggt ggaacgcgcc 660 agctcagttg tgaatcgcat tcacaactgg ctggtgcaat accgcaaata ggggggcctt 720 gagttggcgc gcgggttcac acacgaagca gtatgcacag atgtacccgg cctggacgcc 780 accaacctgg gagactcccg cccactaaca gacactaaca ttaggagagt agtcggtccg 840 gttagttcgg attacgacat agtattttat actaactcta ggaataattt gatgcgaggc 900 ttggtaaaca gggtgctcac ttacaagggt ggacctgtat tagaaccatc accaggcgcg 960 tggaaaagtc tcagaggatt agccacatcc ctaggcaata ggtgtctgac caccccgttg 1020 agcccagatg aatttctggc gtgctatgtg ggtcgcaaaa gaaccatcta tgctaaggcg 1080 atagagagct tcaagactaa accatgggat gcacgaaaag acatgatcgt caaggccttc 1140 ataaagaaag agaaggacaa actggtagac gaatcgtgcg atccccgcat catccaacca 1200 cggactccaa gattcgtaac gagattcggg cgttacgtta gagccataga gaaacgtctg 1260 tacagtgaat ggaccaagag cttctcgagt ttcaccgtca ccaacactcc agtttgtttg 1320 aaaggaatga actatagaac tagggcacga gccctactgg agaaatggca gagttttgac 1380 tcgccggttg ctgtctgctt agacgcttca cggtttgacc tgcacgtgtc ggttgatgca 1440 ctcaaattta cggaccaaat ctacttgtct gcctttactg gcatcgacag gtccgagctc 1500 aaggaaatcc tcagaaacag acataagacc accggattcg caacgttcaa ggaaggcaca 1560 ttccactacg aaaaagtggg aggcagatgc tcaggggata gtgatacctc cttaggaaac 1620 gtgagcatca tgctggcaat cacaagggtg atttgtgaag gactgaaagg catacacatt 1680 gaagtagcca atgatggaga tgaccaggtg ttgatggtcg agacaaacca actcgacaac 1740 ctggtcaagg agcttagtcc cacattcgcg cgatttggtt ttcgcgtgaa agtagaggat 1800 cctgtctggg aattcgagag aatagatttt tgccaaacca gaccgatctt cctatcacca 1860 ggtgagccca taatgtgccg atacccaatg cagtctatgt ccaaagacgt tgcgtccttc 1920 ctcaatatag aaagatcaga gggatggaaa tacatgctca gagctatagg agcatgtggg 1980 tcttctagtt tctctcaagt tccagtgctt ggtgagtttt atagtgcgct cagctccaca 2040 tcaaacaaag atgaaaccaa atggtggagg cgcacgggag ttgatttggg gtttaaacag 2100 cttaccaaca atgtaggcac gatcccttac gacgaggtca cggcacgaag ctccttctat 2160 aaggccttcg gaatcctccc agacacccaa gcagcactcg aaagcaaaat acgcaactgg 2220 aatatgagct ccgtaccaca catcgagcaa gtccacaaat tctcgagtga gtttcccgtg 2280 gttgacggat gggcctaact tagggaatac agttaggtta agttagtcgg cccctcctct 2340 tgctggctgg gtgagagggg gggccagcgc agactggttg gataggtttg ggaacataga 2400 tccgaactcc aatcaacggg taggtcgcac ccgcgtagtc gagaatgatt accataattg 2460 gtaggtgagg tcacgccgta tggccaagtc acccgagctt tcggtagggg gtctagttgt 2520 tgagtgccat tatgacataa ccaactagac accccacatt tggagaagcg gcttgcccac 2580 gctccaacat tccatggata gattgaacga cgaaatgtca ttgtcttgcc gtcagaggcg 2640 ttcccctctc caaggctagc ccgacgtgcg ccatgcttgg ggtctatgga atagttgatg 2700 gtgggaacta caggggaggg tatgccccaa gctattaccc aagtgtgaaa ctcccgcacg 2760 acaccacttc gaagccggag tgggggcgtt agtcgtgtgg caacttatcc tttcggatta 2820 ccaggaaccc cgccc 2835 //