ID AF020616; SV 1; linear; genomic RNA; STD; VRL; 2834 BP. XX AC AF020616; XX DT 06-NOV-1997 (Rel. 53, Created) DT 06-NOV-1997 (Rel. 53, Last updated, Version 1) XX DE Carrot red leaf luteovirus associated RNA clone a8 putative RNA dependent DE RNA polymerase, complete cds. XX KW . XX OS Carrot red leaf luteovirus associated RNA OC Viruses; Riboviria; unclassified Riboviria; unclassified ssRNA viruses; OC unclassified ssRNA positive-strand viruses. XX RN [1] RP 1-2834 RA Watson M.T., Tian T., Estabrook E., Falk B.W.; RT "A small RNA identified as a component of California carrot motley dwarf RT resembles the beet western yellows luteovirus AT9-associated RNA"; RL Unpublished. XX RN [2] RP 1-2834 RA Watson M.T., Tian T., Estabrook E., Falk B.W.; RT ; RL Submitted (25-AUG-1997) to the INSDC. RL Plant Pathology, University of California, Davis, 1 Shields Ave., Davis, CA RL 95616, USA XX DR MD5; 88e31bc01fe54129f6487151b4e0a5fc. XX FH Key Location/Qualifiers FH FT source 1..2834 FT /organism="Carrot red leaf luteovirus associated RNA" FT /strain="California" FT /mol_type="genomic RNA" FT /clone="a8" FT /db_xref="taxon:67962" FT CDS 25..2298 FT /codon_start=1 FT /transl_except=(pos:709..711,aa:OTHER) FT /product="putative RNA dependent RNA polymerase" FT /note="ORF 1b; results from readthrough of stop codon" FT /db_xref="GOA:O37361" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:O37361" FT /protein_id="AAB82543.1" FT /translation="MTNLDIESLVETQPAVSKLVGLLPKISSKIIDAAKVPATCGLIVA FT AGLGLYAYRKVCINRLELVRENTTPRPADCIEDVLEVEEDAAAELTLAKIAKEAAMEAA FT LNPGEITERVRDAAKINAQPSANPLTKRKTRVRPNKTGQFIRVLRAEIKAQMGTPTITA FT ANEAVIRHMISKFCASHNIRTTSYAHLISRVVREVMTPYPGDAEEVERANSVVNRIHNW FT LVQYRKXGGLELARGFTHDAVCTDVPGLDATNLGDSRPLTDTNIRRVVGPFSSDYDIVF FT YTNSRNNLMRGLVNRVLTYKGGPVLEPSPGAWKSLRGLATSLGNRCLTTPLSPEEFLAC FT YVGRKRTIYTKAMESFKTKPWDARKDMIVKAFIKKEKDKLVDESCDPRIIQPRTPRFVT FT RFGRYVRAIEKRLYIEWTKSFSSFTVTTTPVCLKGMNYRTRARALLEKWQSFDSPVAVC FT LDASRFDLHVSVDALKFTDQIYLSAFTGIDRSELKEILRNRHKTTGFATCKEGTFHYEK FT VGGRCSGDSDTSLGNVSIMLAITRVICEELKGIHIEVANDGDDQVLMVETNQLDNLIKE FT LSPTFARFGFRVKVEDPVWEFERIDFCQTRPIFLSPGEPLMCRYPMQSMSKDVASFLNI FT ERSEGWKYMLRAIGACGSSSFSQVPVLGKFYSALSSTSNKDESRWWKRTGVDLGFQQLT FT SGVGDIPYDEVTARSSFYKAFGILPDTQVALESKIENWNMSSVPPIEQVHKFSSEFPVV FT DGWA" FT CDS 25..711 FT /codon_start=1 FT /product="unknown protein" FT /note="ORF 1a" FT /db_xref="UniProtKB/TrEMBL:O37362" FT /protein_id="AAB82542.1" FT /translation="MTNLDIESLVETQPAVSKLVGLLPKISSKIIDAAKVPATCGLIVA FT AGLGLYAYRKVCINRLELVRENTTPRPADCIEDVLEVEEDAAAELTLAKIAKEAAMEAA FT LNPGEITERVRDAAKINAQPSANPLTKRKTRVRPNKTGQFIRVLRAEIKAQMGTPTITA FT ANEAVIRHMISKFCASHNIRTTSYAHLISRVVREVMTPYPGDAEEVERANSVVNRIHNW FT LVQYRK" FT CDS 2672..2791 FT /codon_start=1 FT /product="unknown protein" FT /note="ORF 2" FT /db_xref="UniProtKB/TrEMBL:O37363" FT /protein_id="AAB82544.1" FT /translation="MLGVYGIVDGGNYRGGYAPSYYPSVKLPHDTTPKPEWGR" XX SQ Sequence 2834 BP; 797 A; 665 C; 754 G; 618 T; 0 other; gggatttagc attcactagc gaacatgacg aatcttgaca tcgagtcgct agtagaaacc 60 cagccggcag tatccaaatt agttggatta ctgccaaaaa ttagttctaa aataatagac 120 gcggccaaag tgccagcgac ctgcggcctc atagttgccg cgggattagg attgtacgca 180 taccgaaagg tgtgcatcaa cagattagaa ttagttaggg aaaacactac cccccgaccc 240 gcggactgta tagaggacgt gctggaggtc gaggaggatg ccgcagcgga attgacgcta 300 gcgaagatcg ccaaagaggc ggcgatggag gcagctctta acccgggcga aattacagaa 360 agggttagag acgccgcaaa aataaacgcc caaccctcag caaaccctct aaccaagagg 420 aagacgagag tcaggcctaa caagacgggc caattcatca gggtactgag ggcagaaata 480 aaagcccaga tgggaacccc taccataacg gcggctaacg aggcggtgat aaggcacatg 540 ataagcaaat tctgtgcatc acacaacata cggacgacct cgtacgccca cctaatctct 600 agggtagtga gggaggttat gaccccttac ccaggcgatg ctgaagaggt ggagcgcgcc 660 aactcggttg tgaatcggat tcacaactgg ttggtgcagt accgtaaata ggggggcctt 720 gagttggcgc gcgggttcac acacgatgca gtatgtacag atgtgcccgg cctggacgcc 780 accaacctgg gtgattcccg cccactaaca gatactaata ttaggagagt agtcggtccg 840 tttagttcgg attacgacat agtattttat actaactcta ggaataactt gatgcgaggc 900 ttggtaaaca gggtgctcac ttacaagggt ggacctgttt tagaaccatc accaggcgca 960 tggaaaagtc taagagggtt agccacatcc ctcggtaaca gatgtttaac cacccctttg 1020 agcccggaag aatttctggc gtgctatgtg ggtcgtaaga gaactatcta taccaaggcg 1080 atggagagct tcaagactaa accatgggac gcacgcaagg acatgatcgt caaggccttc 1140 ataaagaaag agaaggacaa gttggtagac gaatcgtgcg atccccgcat catccaacca 1200 cggactccaa gattcgtaac gagattcgga cgttacgtta gagccataga gaaacgtcta 1260 tacattgaat ggaccaagag cttctcgagt ttcaccgtta caactactcc agtctgtttg 1320 aaaggaatga actatagaac gagggcaaga gccttgctgg agaaatggca gagtttcgac 1380 tcgccggttg ctgtttgttt agacgcatcc cggtttgacc tccacgtatc ggtagacgca 1440 ctcaaattta cggatcagat ctacttgtcg gccttcacag gcatcgaccg atccgagctc 1500 aaggaaatcc tacgaaatag acataagacc accggatttg caacgtgcaa ggagggcaca 1560 ttccactacg agaaagtggg aggcagatgc tcgggagata gtgatacctc cttaggaaac 1620 gtgagtatca tgctagcgat cacgcgggtg atttgtgagg agctaaaagg catacacatt 1680 gaagtagcca atgatggaga tgatcaggtg ctgatggtcg agacaaacca actcgacaac 1740 ctgatcaagg agcttagccc cacatttgca cgatttggtt ttcgtgtaaa agttgaagat 1800 ccagtctggg aattcgaaag aatagatttt tgccaaacca gaccgatctt cctgtcgccc 1860 ggcgaacctt taatgtgccg gtacccaatg caatctatgt caaaagacgt tgcatccttc 1920 ctcaatatag aaagatcaga gggatggaaa tacatgctca gagctatagg agcatgtggg 1980 tcttctagtt tctctcaagt tccagtactt gggaagtttt atagtgcgct cagttccaca 2040 tcaaataaag atgaatcaag atggtggaaa cgcacgggag ttgatttggg atttcagcag 2100 ctcacaagtg gtgtgggcga tattccctac gacgaggtca cggcacgaag ctccttctat 2160 aaggccttcg gaatcctccc agacacccaa gtagcactcg aaagcaaaat agaaaactgg 2220 aatatgagct ccgtaccacc aattgagcaa gtccacaaat tctcgagtga gtttcccgtg 2280 gttgacggat gggcctaaca tagggttaaa gttaggtgtt agtagttagg gccccttcct 2340 cgctggctgg gtgagaaagg ggccaccgca gactggttgg ataggtttgg gaacatagat 2400 ccgaactcca accaacgggt aggtcgaacc cgcggagtcg agaatgatta ccataattgg 2460 taggtgaggt cacgccgttt ggtcaagtca cccgagcttt cggtagggac tctagttgtt 2520 gagtgttatt atggcatgac ccgctagacg acccacactt ggagaagcgg cttgcccacg 2580 ctccaacatt ccatagatag attgaacgac gaaatgtcat tgtcttgccg tcagaggcgt 2640 tcccctctcc aaggctgacc cgagctgcgc catgcttggg gtctatggaa tagttgatgg 2700 tgggaactac aggggagggt atgccccaag ctattaccca agtgtgaaac tcccgcacga 2760 caccactccg aagccggagt gggggcgtta gtcgtgtggc aacttatcct ttcggattac 2820 caggaacccc gccc 2834 //