ID AF020335; SV 1; linear; genomic RNA; STD; VRL; 3808 BP. XX AC AF020335; XX DT 10-MAR-1998 (Rel. 54, Created) DT 10-MAR-1998 (Rel. 54, Last updated, Version 1) XX DE Rice ragged stunt virus segment S2 P2 gene, complete cds. XX KW . XX OS Rice ragged stunt virus OC Viruses; Riboviria; Reoviridae; Spinareovirinae; Oryzavirus. XX RN [1] RP 1-3808 RA Upadhyaya N.M., Li Z., Ramm K., Yang M., Gellatly J.A., Kositratana W., RA Gerlach W.L., Waterhouse P.M.; RT "Rice ragged stunt oryzavirus:complete sequence and genome organization"; RL Unpublished. XX RN [2] RP 1-3808 RA Upadhyaya N.M., Waterhouse P.M., Li Z.; RT ; RL Submitted (20-AUG-1997) to the INSDC. RL Plant Protection, CSIRO Plant Industry, Cnr. Barry Drive and Clunies Ross RL Street, Canberra, ACT 2601, Australia XX DR MD5; a02d5ac2986c930f5d83168ef3f9167b. DR EuropePMC; PMC113995; 11134312. XX FH Key Location/Qualifiers FH FT source 1..3808 FT /organism="Rice ragged stunt virus" FT /chromosome="segment S2" FT /mol_type="genomic RNA" FT /note="Thai-isolate" FT /db_xref="taxon:42475" FT CDS 169..3747 FT /codon_start=1 FT /product="P2" FT /db_xref="GOA:O56043" FT /db_xref="UniProtKB/Swiss-Prot:O56043" FT /protein_id="AAC04673.1" FT /translation="MTEYTNLPVKWTNGIVISDERMMLDPLPSEVSAVLDAPINYSYRY FT NELRRTHSLKLFGVWSGYIPSHADKHLMIFQLLQQEKELTGDEIRLALRQMQGSIKLPI FT NDKLLDSLDRYSLIFAWIAYAGCLDSAFWQQVCADPKCLVYNPDDNLKFSLMFSLARQY FT SATTRICSADGLRIPSQISPDLGQLAFDLVFNSSVRQTVWFHANDFPAFDFYTKDVGTM FT VTFHVNFLYNMTHCVPFKTKQSCAEYLIQKAHEAWSVYCGVLNDTIRHRLRLVEGVGIV FT TLDVDLQILAAVGWYLPLLVYTIRSVSGSDISEWLNVARREFRDLNCSSMINGEGYVGV FT PEQFWTIHATSKARMWPRVKKYTCDLTDLYNGDLSSTVLGEGASETGTVKWFDVPLGPK FT VENFRVVGTRIGALSRANVIYNYEDPSDNCDLARAIGSFVPSLPTSGTRDTNGDLEDAK FT KMFDYRVSQNVYSICQKGKISSLVSRSVKNLRASLMNGELRVYKGSRLWALRAMLFSDK FT LRYKSDGQVIDPYESHRGKITVRLNNSSLKMLSAFVTLIELAMAQSSGVEDNMLNGRGL FT SPLQVRSDREVSRVVIAGAINEPLVGCLRRMYPKLSVIGFGMDAVGENERLTVEGASQR FT NLACDMLISDIDQTFYSDFTKMCNVTVKHALAFSSWSDYVLMKVNYPSSHLLNEIKQAL FT LSRGFSRIVLPVVMCGQNSFTSEVFVYIGRAGVGGHVDFKNNWFTKNDILMRRYRHMKA FT PLITIPQVVHSVVSKCVTKHDTELFANPGSIVALTVEYASAREVVSLISEVCSPVWTWR FT TGAGANKFVNIVGMPSKARAALTRRTDEHYYLKAFERNIVGTSFGMYKGIPRIDALNCV FT SWVTIFGAAMRECLYWIVDTLKVQYNEVISIGARNMTDIEFIKPSVKLTCYDEYYANPQ FT DLATHYNVNYENKYFNWLSPTLVNDSVYVANFVIMAPTEGSESPSATEQLDRIDSVAGA FT MAKSSITRMTFVGNLYDSRFLADIALSSLPPEGLKVNDTRTTVQIGKYPPCAAVKPSAF FT LERMKKYKGVLSYHVYPLGYDRVLKTCADNLWIPDVAGSPMLAFCQGLSYAFYITKPAI FT PDEGIDQFMLDDMPDDGSGSVTPTQSPSPSPSPSAAANTEASTVVEPIDNLNVVSPTVP FT GQPSQTPVNPNQSTELQSVAKPGIVR" XX SQ Sequence 3808 BP; 1044 A; 757 C; 924 G; 1083 T; 0 other; gataaatctt cccgaagcaa ccacgtttga cgtaacctac tgaagagtcc cccggaagtt 60 tcactcagga gttgagtcct tgaaccccag cattcaatca aaagaacata tcatcatcat 120 cattcaaatc gctttcttcg tacttgttgt ttgttggatt tccttaaaat gacggagtat 180 acaaatttgc cagttaaatg gacgaacggc atagtcattt cagacgaacg tatgatgctc 240 gatcccttac cgtcagaagt ttcagccgta ctggacgcac caatcaacta ttcctatcgg 300 tacaacgaac tgcggcgcac gcatagtctt aaattattcg gtgtttggtc gggctacata 360 ccaagtcatg ctgataagca tttgatgatc ttccaattat tgcagcaaga aaaggaatta 420 acaggtgacg agataagatt ggcgcttagg cagatgcaag gatcaattaa gttacctata 480 aatgacaagc tgcttgattc gttagaccgg tattctctaa tttttgcgtg gatagcatac 540 gcgggatgtc tagactcagc tttttggcaa caagtatgtg cggacccgaa atgtttggtc 600 tataatccag atgacaatct caaattctca ttaatgttta gtcttgcaag acagtacagc 660 gctacgacta ggatttgctc agcagatgga ttgcgcattc cctctcaaat atcgccagat 720 cttggtcaat tggcgttcga tctcgtgttt aatagttccg taaggcagac tgtttggttt 780 cacgccaatg attttcccgc tttcgacttt tatactaagg acgttggaac tatggtcact 840 tttcatgtta atttccttta taacatgacg cattgtgttc cgttcaagac gaagcaatca 900 tgcgctgagt atctgatcca gaaagcacat gaagcgtggt cggtttattg cggagtatta 960 aacgatacga tcagacacag attacgatta gttgagggcg ttggaattgt tacattagac 1020 gttgacttgc aaatattagc tgcggttgga tggtacttac cattactcgt ctatactatc 1080 agaagcgtgt caggttcaga tatcagtgag tggctcaacg tcgcgagacg ggagttcaga 1140 gatcttaact gtagcagtat gatcaatggt gagggttatg ttggtgttcc ggaacagttt 1200 tggacgatcc atgcaacttc aaaagccagg atgtggccaa gggttaagaa atacacctgc 1260 gacttaacag atttatacaa cggcgatctt tcaagcactg tattgggcga aggagctagc 1320 gagactggaa cagttaaatg gtttgatgtg cctttaggac ctaaggttga gaatttcaga 1380 gtggttggaa cacgtatagg cgcgttgagc agagctaatg ttatatacaa ttacgaagat 1440 ccttccgata attgtgattt agcgcgagcc attggttcgt ttgttcctag tttgccaact 1500 tccggtacta gagatacgaa tggtgatctt gaagacgcga agaagatgtt tgactatcgg 1560 gtgtcacaaa acgtatatag catttgtcag aaagggaaaa tttcttcgtt ggtatcgcgc 1620 agcgtcaaga acttgagagc gagtctgatg aatggcgagc tacgcgtcta taaaggaagc 1680 agactttggg ctctaagagc gatgttgttc tcagataaac tcaggtacaa aagcgatggt 1740 caagtaatcg atccatacga gagccacaga ggtaaaataa cagttagatt aaacaactct 1800 agcttaaaga tgctgtcagc ttttgtgacg ctaatcgagc tagcgatggc acagtcgtcg 1860 ggcgttgaag ataatatgtt aaatggtcga gggttatccc ctttgcaagt aagatcagat 1920 cgtgaagtaa gtcgagtcgt gatcgctgga gctattaacg agccattagt tgggtgttta 1980 agacgtatgt atccaaagct gtcagtgatt ggattcggta tggatgcagt tggtgagaat 2040 gaacgtttaa ctgtcgaggg cgcctcacaa aggaatttag cgtgtgatat gctaatatcg 2100 gacatcgatc aaacgttcta cagtgatttc actaagatgt gtaatgttac tgtgaagcat 2160 gctcttgctt tctcgagctg gagtgattac gttctgatga aggtgaacta tccatcctcg 2220 catcttttga atgagattaa acaagcccta ctttcgcggg gattttctag aattgtcctt 2280 cctgtagtga tgtgtggtca aaattcattc acgagtgagg tttttgttta cattggacga 2340 gctggtgttg gtgggcatgt tgattttaag aacaactggt tcaccaaaaa cgatatatta 2400 atgcgtagat atcgtcatat gaaagctcca ttaatcacca taccgcaagt tgtgcacagt 2460 gttgtatcaa aatgtgtgac gaagcacgac accgagctgt tcgctaatcc tggaagtatc 2520 gttgccttga ctgtcgagta tgcatccgca cgagaggtag tttccctaat cagtgaggta 2580 tgttcgcctg tatggacatg gcgtactgga gctggcgcga acaagtttgt caatattgtc 2640 ggaatgcctt cgaaagctag ggcagctttg accaggcgaa ccgatgaaca ttattatctt 2700 aaggcatttg agcggaatat agtcggtacg agttttggta tgtacaaagg gatacctcgc 2760 atagatgctc ttaattgcgt gtcatgggtg acgattttcg gagctgcaat gcgcgaatgt 2820 ctttattgga tcgttgatac tctcaaagtg caatataatg aggtgatatc aatcggagct 2880 cgtaacatga cggatattga gttcatcaaa cccagtgtca aattgacatg ctacgacgag 2940 tactacgcta accctcagga tctagcgacg cattataatg tgaattatga aaataagtac 3000 ttcaattggt taagccctac cctcgtcaac gacagtgttt acgtggctaa tttcgtgatt 3060 atggccccta ccgaaggttc cgaatctcct agcgctacgg agcagcttga tagaatagat 3120 tctgttgcag gcgcgatggc aaagtctagt attactagga tgacgttcgt tggtaaccta 3180 tacgattcta ggttcttggc cgatatagct ctttcgtccc tgccacctga gggattaaaa 3240 gttaatgata ctagaacaac tgttcaaatt ggtaaatatc ctccatgtgc cgcggttaag 3300 ccttctgcgt ttctagagcg catgaagaag tacaaagggg tgttatcata ccatgtgtat 3360 cccttgggtt acgatcgtgt tcttaagact tgcgccgata acttatggat accggatgta 3420 gcaggatcgc ccatgctagc tttctgtcaa ggactatctt acgcgttcta tatcacgaag 3480 ccagctatac ctgatgaagg catagatcaa tttatgttag acgatatgcc cgatgatggt 3540 agtggatctg taactccaac acaatcgcca tctccaagtc cttctcctag tgccgcggct 3600 aacactgagg cttcgactgt cgttgagcct atcgataatt taaatgtagt gagtccgacg 3660 gtaccagggc aaccatctca gacgcctgtc aatcccaacc aatcaaccga gctccagagc 3720 gttgcgaagc cgggcatcgt taggtaggag tagttcattc gtgagaacct gcggccaaca 3780 ggggaacggg aggagataga gaaagtgc 3808 //