ID AF020334; SV 1; linear; genomic RNA; STD; VRL; 3849 BP. XX AC AF020334; XX DT 10-MAR-1998 (Rel. 54, Created) DT 10-MAR-1998 (Rel. 54, Last updated, Version 1) XX DE Rice ragged stunt virus segment S1 P1 gene, complete cds. XX KW . XX OS Rice ragged stunt virus OC Viruses; Riboviria; Reoviridae; Spinareovirinae; Oryzavirus. XX RN [1] RP 1-3849 RA Upadhyaya N.M., Li Z., Ramm K., Yang M., Gellatly J.A., Kositratana W., RA Gerlach W.L., Waterhouse P.M.; RT "Rice ragged stunt oryzavirus:complete sequence and genome organization"; RL Unpublished. XX RN [2] RP 1-3849 RA Upadhyaya N.M., Waterhouse P.M., Li Z.; RT ; RL Submitted (20-AUG-1997) to the INSDC. RL Plant Protection, CSIRO Plant Industry, Cnr. Barry Drive and Clunies Ross RL Street, Canberra, ACT 2601, Australia XX DR MD5; 625274ea502a416d2e6996f026767554. XX FH Key Location/Qualifiers FH FT source 1..3849 FT /organism="Rice ragged stunt virus" FT /chromosome="segment S1" FT /mol_type="genomic RNA" FT /note="Thai-isolate" FT /db_xref="taxon:42475" FT CDS 30..3743 FT /codon_start=1 FT /product="P1" FT /db_xref="GOA:O56042" FT /db_xref="InterPro:IPR008580" FT /db_xref="UniProtKB/Swiss-Prot:O56042" FT /protein_id="AAC04672.1" FT /translation="MEQRQYILDLVRRELTDTPQTQDLQKLTERIISLEKTITQLGTLL FT LGPNSTTAHEVSSLATAMQKVLYYNRAKAAISDFIMAIPRYPLYSYYGNDDIDDYHLAV FT VNRKPILPQFRYLGLMFGKPATGIQPYNFEVSFNLSKVEQTLISELAPTESQVIEDMRR FT DSTMLLKAEGRYDKSLNVFTVLITIITSNKLIYSQRLNIPGHRVASFELMIIANAVHTT FT VFEPAKVTKLPSCELGTSSIMSTTFEIRVQDMSTLPSPAFHARTIQSIKKTWRNADFST FT GQLSAEDATYEPKMSGAEDVVIPHVYGLAESCEILTISDVYESVYNFESLCYCYSKKSG FT MEMAVRMMMLALELMRDDYKQVNSIYDVDHQTSESVGILAGITEGLLANAKAIALLVKH FT AVLSEELQINLNSIEQSYSRLVPLVPIYVTFDHVGTYSKGDAPIRDEPFSLTGLQLPMF FT AEGLSNSTIKTKFKSTWSVEPNVFGADHTIDCYESDDFIVLLKPKFAYWDHRYSHQPVS FT AVSYSDRGKSRTSYVLDCASSYNEESSLGYTSLFLAGRKAASPCALVNIPLNRSVKFES FT VSFLITSKRSVLPISGENLFGEIDMYIGRVRGTLNCNKFTSTEYIDRDGYKRYGLIGKC FT TGGSLLNASLSPLWVRLFCGGHKNADQIRFIGFSRTPVVGTLSGESLEVYPMPGSIGSS FT GTLSQSGRMSIYNDVTSLEVTLSVRHEASLETANVYAQSEIPGAALSTEIRDYIRQQNL FT YYSDLGLREEEAMIQGAVVMRTTFRGKLYVTKGTDSIPQSVYVWNTQLNDLAVAVKMTA FT DLANAAEIRSKENQFRLNEMEQAVREIENQLLLSGIIDGLAALTGPATPVVKKAASLVF FT GAMKNMSRSGFRILAAGLTNSYFKTVMTHFLGTRKGVEVWRGLGSACAESSVMIKMSGK FT TKPIVKEGSTDLFLADKNFILADPIEFAKHNISTKYGGNVEQIGNVVSDSERLAVGGDL FT GSHVVTVFHRPLSILPEPLRTLLFKLSTSGLSKRDLSAREAWIRQTLHPTHSYATISYD FT YVLPKTGGNRRVLCFAGVGDPNPYNLPTGDKNVGIGSYMVEFDIIGLDKDTGVKVMRPV FT PWKQCGYTEEQVWSIYKTLGKEYRKVELKPYTVEDAWRVIAKSSHKRVLSDKAIISTPI FT SYERQRAIEYMLSSHGFDYNLVLNNCQDFTRGLFDYARGGPVPDFIENDVRIAMIHSTS FT RHFAEVCSWVGV" XX SQ Sequence 3849 BP; 1114 A; 729 C; 944 G; 1062 T; 0 other; gataaaactc caagacccaa caagacggca tggaacaaag acagtacatc cttgatctgg 60 tacgcagaga actcacggac acaccacaaa cccaagactt acaaaaacta actgaacgta 120 ttatttcgct tgaaaagacc atcacgcagc tcggaacttt gcttttaggg cctaactcca 180 ccacagcgca cgaagtgtca tcgttagcta cggcaatgca aaaagtttta tattataatc 240 gagctaaagc agcgataagt gatttcatca tggctattcc aagatatcca ctttacagct 300 attatggtaa tgatgatatt gatgattatc atttagctgt tgttaatcgt aagccaatct 360 tgccacagtt taggtattta ggtctcatgt tcggtaagcc ggctactgga atacagcctt 420 acaattttga agtgagtttc aatctgagca aagtagaaca aactttgatt tccgagttag 480 ctccaacgga atcgcaggtc atcgaggaca tgagacgtga ctctactatg ttactgaaag 540 ctgagggtcg ttacgacaaa agtcttaacg tatttacagt attgatcaca atcattacat 600 caaataagct tatatactcc cagcggctga acattcctgg tcatagggta gcgtcatttg 660 agcttatgat tatagcgaat gcggttcata ccaccgtttt cgagccggcg aaggtgacca 720 aacttcccag ttgtgaattg gggacatcgt ctataatgag taccactttt gagattagag 780 tgcaagatat gtcaacgcta ccgtcgccag cttttcacgc tcgaaccatt cagtccatca 840 aaaagacttg gcgtaacgct gacttttcaa caggccaact atcagctgag gatgcaacct 900 atgagccgaa gatgagtgga gccgaagatg tcgtgatacc gcatgtatac ggtttggctg 960 agagctgtga gattttgact atttccgacg tctacgaatc agtttacaat tttgaaagcc 1020 tgtgttactg ttatagtaag aagagtggaa tggaaatggc agtcaggatg atgatgttag 1080 ctttagagtt aatgcgcgat gattacaaac aagttaatag catatatgac gtcgaccatc 1140 aaacttcaga atcagttgga atcttagctg ggatcacgga aggtttattg gccaacgcga 1200 aggcgatcgc gttacttgtt aaacatgctg tactgtctga agagctgcag atcaatttaa 1260 attcaatcga acaatcttat agtagattag taccgctagt gcctatctat gttacgtttg 1320 atcacgtcgg aacatactca aaaggtgatg cgccgatccg tgatgaacct ttttcgttaa 1380 ccggattgca actgccaatg ttcgcggaag ggctgtcgaa ctcaactatc aagactaaat 1440 ttaaaagcac ttggtcggtt gaaccaaatg tatttggagc agatcatacg atagattgct 1500 atgaatctga cgactttata gttttactga agccaaaatt cgcttattgg gaccaccgat 1560 attctcatca acccgtgtct gcggttagct actccgatag aggtaaatcg agaacgagtt 1620 atgtattgga ttgcgctagc tcttataacg aggagtcttc gcttggttat acgagtctat 1680 ttctggcagg acgtaaagcg gcgagcccat gtgcgctagt caatatccct ctcaatcgtt 1740 cggtcaaatt tgagagcgtt agctttttaa ttacatcgaa aagatctgtg ttacctattt 1800 caggagaaaa cttgtttgga gaaattgaca tgtacattgg gagagtacgt ggcacgctaa 1860 actgtaacaa gttcacttcg actgaataca tcgaccgtga tggttataaa agatatggat 1920 tgattggaaa atgcactgga ggatctcttc tcaatgcaag cttatcgcct ttgtgggtac 1980 gtctattttg cggaggtcat aagaatgctg atcagataag attcataggc ttttctagaa 2040 cgcctgtcgt agggacgttg tcaggtgaaa gtttagaagt atatccgatg ccgggttcta 2100 ttggatcgtc aggcacttta tcgcaaagtg ggagaatgtc gatttataat gatgtaacta 2160 gccttgaggt tactctttca gtaagacacg aagcaagttt agaaacagcg aatgtttacg 2220 ctcagtctga gatacctggg gctgcgttat cgaccgagat tagggattac attagacagc 2280 agaacttata ctattccgat ttaggattga gagaggagga agccatgata caaggggctg 2340 ttgtgatgcg tactacattt aggggaaaat tgtacgttac taaaggtact gattcgatac 2400 ctcagagcgt ctacgtgtgg aacacacaac taaatgactt agcagtagcg gttaagatga 2460 ctgccgatct cgcaaacgca gctgagatta gatcaaagga gaatcaattc cggttgaatg 2520 agatggagca agctgtgcgt gaaattgaaa atcagctatt actttctggc attattgatg 2580 gcttagcggc gctcacagga ccagcgaccc cagtggttaa gaaagcggcg tcacttgtgt 2640 ttggtgcgat gaagaacatg tcgaggtcag gattcaggat tctagcggct gggttgacga 2700 attcctattt caagacagta atgacacact tcttgggtac gaggaaaggc gttgaagtgt 2760 ggcgtggatt gggatctgca tgtgctgagt caagcgtaat gattaaaatg tcgggtaaaa 2820 caaagccgat agtcaaggaa ggttcaacgg atttattcct tgctgacaaa aatttcattc 2880 tcgctgatcc tatcgagttc gcgaagcata acattagtac taaatacggt gggaacgttg 2940 aacaaatagg gaacgtggta tcagattcag agagactcgc ggttggtggt gatctaggaa 3000 gccatgtagt gacggtcttt catcgaccat taagtatttt accagaacca ttgaggactt 3060 tacttttcaa actttccact agtgggttaa gtaagcgtga tttaagcgct agagaggcat 3120 ggatacgaca gactctgcat cctacgcact catacgccac tatatcttac gactacgttc 3180 tgcctaaaac aggtgggaac cgaagagtgc tgtgtttcgc gggagttggc gatcctaacc 3240 cttacaatct tccgaccggc gataaaaatg ttggtattgg ttcgtacatg gtagagttcg 3300 atataatcgg tttagataag gatactggag tgaaagtgat gcggccagtt ccttggaagc 3360 agtgtggtta cacagaagag caagtgtggt ctatttacaa gacgttaggt aaagagtatc 3420 gtaaagttga actgaagcct tataccgttg aagatgcgtg gcgtgtaata gctaaaagtt 3480 cgcacaagag agtgctgtca gataaagcga tcatatcaac cccaatttct tatgagagac 3540 agagagccat tgagtatatg ttatcatcgc atggatttga ttacaattta gtgctgaata 3600 attgccaaga ttttacaaga ggattgtttg actacgcgcg tggcgggccg gtgcctgatt 3660 ttattgaaaa cgatgttagg atcgctatga tacacagtac ttcaagacat tttgctgagg 3720 tttgctcgtg ggtaggagtg taaggacatg aggtgactgt ctctatgccg cctactgttg 3780 cctggtggga aagaacgggg ccttgagtaa gccgcgccca ttggggtcgg ggagtgatag 3840 agaaggtgc 3849 //