ID   AF020090; SV 1; linear; genomic RNA; STD; VRL; 1500 BP.
XX
AC   AF020090;
XX
DT   29-SEP-1997 (Rel. 52, Created)
DT   27-FEB-2006 (Rel. 86, Last updated, Version 2)
XX
DE   Barley yellow dwarf virus - PAV Australian isolate RPVa RNA polymerase
DE   (Pol) gene, partial cds; and coat protein and putative movement protein
DE   genes, complete cds.
XX
KW   .
XX
OS   Barley yellow dwarf virus PAV
OC   Viruses; Riboviria; Luteoviridae; Luteovirus.
XX
RN   [1]
RP   1-1500
RA   Waterhouse P.M., Gerlach W.L., Miller W.A.;
RT   "Serotype specific and general luteovirus probes from cloned cDNA sequences
RT   of barley yellow dwarf virus";
RL   J. Gen. Virol. 67:1273-1281(1986).
XX
RN   [2]
RP   1-1500
RA   Wang M.-B., Cheng Z.-M., Keese P., Graham M., Larkin P., Waterhouse P.;
RT   "Comparison of the coat protein and RNA polymerase genes of an Australian,
RT   a Chinese, and an American isolate of barley yellow dwarf virus transmitted
RT   by Rhopalosiphum padi";
RL   Unpublished.
XX
RN   [3]
RP   1-1500
RA   Wang M.-B., Waterhouse P.M.;
RT   ;
RL   Submitted (20-AUG-1997) to the INSDC.
RL   Division of Plant Industry, CSIRO, Clunies Ross Street, Canberra, ACT 2601,
RL   Australia
XX
DR   MD5; 8ba3bcdc251ca6a32e2ea14eb7cada7a.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1500
FT                   /organism="Barley yellow dwarf virus PAV"
FT                   /isolate="Australian isolate RPVa"
FT                   /mol_type="genomic RNA"
FT                   /note="The virus was isolated from a mixture of BYDV-PAV,
FT                   BYDV-RPV and an associated satellite RNA."
FT                   /db_xref="taxon:2169986"
FT   gene            <1..699
FT                   /gene="Pol"
FT   CDS             <1..699
FT                   /codon_start=1
FT                   /gene="Pol"
FT                   /product="RNA polymerase"
FT                   /function="RNA dependent RNA polymerase"
FT                   /db_xref="GOA:O37355"
FT                   /db_xref="InterPro:IPR001795"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:O37355"
FT                   /protein_id="AAB70924.1"
FT                   /translation="TEDQVESFINVLAGTAGARPDEICDKWRDLLVPTDCSGFDWSVSD
FT                   WMLADDMEVRNPLTIDCNELTRHLRAVWLQGISNSVLCLSDGTMLSQVKPGVQKSGSYN
FT                   TSSTNSRIRVMAAYHCGASWAIAMGDDALEAPDTDLNKYKDLGFKVEVSKELEFCSHIF
FT                   KSPTLAIPVNANKILYRLIHGYNPECGNAEVIVNYLNAASSVLHELRHDQELCALLHMW
FT                   LVSGITTKDN"
FT   CDS             886..1500
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="22kDa"
FT                   /db_xref="GOA:O37356"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="UniProtKB/TrEMBL:O37356"
FT                   /protein_id="AAB70925.1"
FT                   /translation="MSTVVLRSNGNGSRRRRQRVARRRPAVRTQPVVVVASNGPARRRR
FT                   RRRPAGPRRGRTPGLGGASRGETFVFAKDSLAGNSSGSITFGPSLSDYPAFQNGVLKAY
FT                   HEYKITNCILQFISEASSTAAGSISYELDPHCKASSLGSTINKFTITKTGARSFPAKMI
FT                   NGLEWHPSDEDQFRILYKGNGASSVAGSFKITLRVQLQNPK"
FT   CDS             911..1372
FT                   /codon_start=1
FT                   /product="putative movement protein"
FT                   /note="17kDa"
FT                   /db_xref="InterPro:IPR001964"
FT                   /db_xref="UniProtKB/TrEMBL:O37357"
FT                   /protein_id="AAB70926.1"
FT                   /translation="MAMVRADADRESLGEGLLSERSQWLWSLPTAQPGAEDAEDQLVLG
FT                   EEELQDSEEQAVGRHLFSQRTHSLATPLEVSPSGRLYQTIRHSRMEYSRPTMNIRSQIV
FT                   SYSSSARPLPQQPVPSLMSWTPIAKHLHLGQQSTSSRSPKLVRAASQRR"
XX
SQ   Sequence 1500 BP; 377 A; 380 C; 372 G; 371 T; 0 other;
     accgaggacc aagtcgaaag ttttatcaat gtcctcgcgg gtaccgctgg tgcccgtcct        60
     gatgagatct gcgacaagtg gcgcgatctc ttggttccaa cggactgctc tggtttcgac       120
     tggtcagtct ccgattggat gctcgcagac gatatggagg taagaaatcc tcttaccatc       180
     gactgcaatg agctcactag acacctgcgt gctgtctggt tgcaaggcat atcaaactct       240
     gttttatgcc tttcggatgg aaccatgcta tcccaggtta agcccggggt ccaaaagagt       300
     ggatcgtaca atacgtcatc tacgaactct aggatccggg ttatggctgc ctatcattgc       360
     ggcgcctcct gggcgatagc gatgggggat gatgccctcg aagcgccaga tacagatttg       420
     aacaagtaca aagatctggg cttcaaagtc gaggtaagca aggagctgga attctgttca       480
     cacatcttca agtctcctac cctcgccatt ccggtcaatg ccaacaagat attgtaccgc       540
     ttgatccacg ggtacaatcc ggaatgtgga aacgctgagg tgattgtcaa ttacctcaat       600
     gcagccagct cagtgctgca tgagctccgt catgatcagg agctttgcgc gttattgcat       660
     atgtggttag tatctggcat aaccacaaag gataactgag cagcaaaact agccgagcat       720
     acgtaagttg caagcgtcgg gagtttagtc ttacacttaa gcccaagatt gattacacat       780
     ttttagcggg attcgccaca ggttttatat cctcaatccc catttcagtt cttggtgttt       840
     atttcgtcta cctaaggatc tcgacccata ttcgtgagat tgttaatgag tacggtcgtc       900
     cttagatcca atggcaatgg ttcgcgcaga cgcagacaga gagtcgctcg gcgaaggcct       960
     gctgtcagaa cgcagccagt ggttgtggtc gcttccaacg gcccagccag gcgcagaaga      1020
     cgccgaagac cagctggtcc tcggcgagga agaactccag gactcggagg agcaagccgt      1080
     ggggagacat ttgttttcgc aaaggactca ctcgctggca actcctctgg aagtatcacc      1140
     ttcgggccgt ctttatcaga ctatccggca ttccagaatg gagtactcaa ggcctaccat      1200
     gaatataaga tcacaaattg tatcttacag ttcatcagcg aggcctcttc cacagcagcc      1260
     ggttccatct cttatgagtt ggacccccat tgcaaagcat cttcacttgg gtcaacaatc      1320
     aacaagttca cgatcaccaa aactggtgcg cgcagcttcc cagcgaagat gatcaacggg      1380
     ttagaatggc acccctcaga tgaggatcag ttccgaattc tttataaagg gaatggtgcc      1440
     tcctctgtag ctggttcttt caagattact ctcagagttc agctgcagaa cccaaaatag      1500
//