ID AF018156; SV 2; linear; genomic RNA; STD; VRL; 6366 BP. XX AC AF018156; XX DT 23-SEP-1997 (Rel. 52, Created) DT 28-APR-2016 (Rel. 128, Last updated, Version 2) XX DE Bamboo mosaic virus strain S complete genome. XX KW . XX OS Bamboo mosaic virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-6366 RA Liao J.T., Hsu Y.H.; RT "Full-length sequence of infectious bamboo mosaic virus genomic RNA"; RL Unpublished. XX RN [2] RP 1-6366 RA Liao J.T., Hsu Y.H.; RT ; RL Submitted (11-AUG-1997) to the INSDC. RL Agricultural Biotechnology Laboratories, National Chung Hsing University, RL 250, Kuo-Kuang Rd., Taichung, Taiwan 402, Republic of China XX RN [3] RC Nucleotide and amino acid sequences updated by submitter RP 1-6366 RA Liao J.T., Hsu Y.H.; RT ; RL Submitted (26-APR-2016) to the INSDC. RL Agricultural Biotechnology Laboratories, National Chung Hsing University, RL 250, Kuo-Kuang Rd., Taichung, Taiwan 402, Republic of China XX DR MD5; 659c8f417f367c84bcf3ac165a957aa5. DR EuropePMC; PMC2885055; 19141462. DR EuropePMC; PMC3258126; 21965537. DR EuropePMC; PMC3720222; 23800142. DR EuropePMC; PMC4527879; 26167882. DR EuropePMC; PMC5440514; 28588562. DR RFAM; RF00290; BaMV_CRE. XX CC On Apr 26, 2016 this sequence version replaced gi:2407618. XX FH Key Location/Qualifiers FH FT source 1..6366 FT /organism="Bamboo mosaic virus" FT /strain="S" FT /mol_type="genomic RNA" FT /db_xref="taxon:35286" FT gene 94..4191 FT /gene="ORF1" FT CDS 94..4191 FT /codon_start=1 FT /gene="ORF1" FT /product="replicase" FT /db_xref="GOA:O37174" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:O37174" FT /protein_id="AAB70562.2" FT /translation="MALVSKVFDSITDPSLRAVLQEEAHSQVKQVLKDTALYSRYALLP FT TAANTLERYAIPHNPFSTKLHTHAAAKALENDLYRTASYLLPKERVSFLFMKPSKMQYF FT RRRGDVDTFINADIVAKDLARYPLETIYPRLPEITTKMAFIGDSLHYFQPEVLEHIFTS FT SPQLETLLATIVLPPEATLRLKSLYPEIYTLHYMPRKFLYKPGGLSGGEYEHDYKDLTW FT LKIGHVTTASMCLTVDRVESKAANHLLLIRRGRLKLSTYRSYDTPEPLVVVPKIFLPPK FT YNAQKPITKTKANSWILYVKSAGEPKIRDVWAKLRQTIANSELNQYEPAELLLLTNYFY FT VLGKLDSITSFETLLGDNILKRLFRPAMAKIQELRHWVSGPTAFMQLYKALQLVDVDFT FT FEVTKNWETKQENHSEPELPKDAIDVLVQSLIGIDYTDAAITEAANPKQQESGPKPYTN FT LPQPLQQTKCPEDTEMSASPECKAAETAQETHKAGPSSNPALNTDQEAAPSEPTDSKER FT KCPTLRELPWKAWLKLLRGLGFQGDLEQSDVEGDLIYPIKHIRHLPVEDFSGPITATLR FT KMNRMPCKYSPDIERAAAFARDVMSNKTGAILPKQSHEWKTTLKRKCKLAPRQTLISVI FT HGAGGSGKSRALQEYMRNNKEDPIVTILPTNELRADWKAKLPAHDPDMFMTFENALLIP FT KGNVVIMDDYTKLPRGYIEAYVQNSPMLDLLILTGDPRQSEHFESAEGNTINDLSPSPV FT VFSAYARYYINATHRNNRDLANALGVYSEKQGKTRISVSNHIEDGRHTLVPSQIKQRNY FT VSMGRKTSTYAGCQGITASRVQVIIDNDTAKCSHQVLYTAFSRAADEIHFCNTMTDEKQ FT FWAKVKCTPYLQAILNLTKEHSLPDPQPEPDEPLEPKAPVTHIAVENVVPLVEEIIEPL FT PEKHDREIYSESTGHSNCIQTENEFIQAFQHQQAKDETLFWATIEKRIVTSTPESNWTE FT FKTKRPLGDILWLAYKEAMCLPAEPIKFDPDLWWKCADEVQNKYLQKPLHMIKNGILRQ FT NPDFGERHIALFLKSQWVKKNEKIGTVNVKAGQTIAAFYQSTVMIFGTMARYMRRVREK FT FCPKNILINCEIDQPTASKWVDTHWKFDRLAYTNDFEAYDQSQDGAMLQFEVMKARHHD FT LPADLIESYIELKLNAKIFLGTLGIMRLTGEGPTFDANTECNIAYTHARFHIPRGTAQL FT YAGDDCALNCEPEERESFKPLAAQFTLKSKPVTIRQGKGSWPEFCGNIITPYGYLKHPR FT KTWAALHKAKLQGKNELKKTATAYALDVLPTYELGDAIHDIFTDNELTFHYQTIRTLHT FT EAHTRVFANHDAIFGEEGLFSS" FT gene 4218..4979 FT /gene="ORF2" FT CDS 4218..4979 FT /codon_start=1 FT /gene="ORF2" FT /product="helicase" FT /db_xref="GOA:O37175" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:O37175" FT /protein_id="AAB70563.2" FT /translation="MDNRITDLLTRSGYSRTSEPRGAGQQLVVHAVAGAGKTTLLREIL FT NTIPGVTIHTAGTPDPPNLTLNYIKGQEPPCPKKYTILDEYPARAKWPEEAWDMLIADN FT LQHTGPTTRPHYIKHTTYRLGPQTVKTLQSLGYQLEFQHRADQQDQGFSFTGLFDGPIY FT GQPITLDTAAHNLALAHGLPALQATQTRGLEYDTTTIISSTPLPTVKDKVGLYIAFTRH FT RKACHIRAPGINPTCDVASSHGPASSSGQTT" FT gene 4945..5304 FT /gene="ORF3" FT CDS 4945..5304 FT /codon_start=1 FT /gene="ORF3" FT /product="ORF3" FT /db_xref="GOA:O37176" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:O37176" FT /protein_id="AAB70564.1" FT /translation="MDQPLHLARPPDNTRAYLVLAIGVASALFLYTLTRNTLPHTGDNI FT HHLPHGGRYVDGTKGILYNSPTSSYPSSSLPFSMVIALATTLFLITRNVLNPAPTTPRI FT YAPLCLHCHRNHPPC" FT gene 5298..5457 FT /gene="ORF4" FT CDS 5298..5456 FT /codon_start=1 FT /gene="ORF4" FT /product="ORF4" FT /db_xref="GOA:O37177" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:O37177" FT /protein_id="AAB70565.1" FT /translation="MLNTDTLCIILSILILGILYNILQQHLPPPCEIIINGHTISIRGN FT CYHTTSS" FT gene 5498..6226 FT /gene="ORF5" FT CDS 5498..6226 FT /codon_start=1 FT /gene="ORF5" FT /product="coat protein" FT /db_xref="GOA:O37178" FT /db_xref="InterPro:IPR000052" FT /db_xref="PDB:5A2T" FT /db_xref="UniProtKB/TrEMBL:O37178" FT /protein_id="AAB70566.1" FT /translation="MSGAGTGTGRGTGTGVGGTGGTGGTGGGGTGRGQQAAAQPWEAIF FT TKDDLAAIEPKPASANVPNTKQWIGIQAGLIKAGATDANFMKVLLGLSLEAFDRGSSEA FT TTWDGITEGVEHRAAANAIKEANCPIHKVTYYLAKPTFAIRQSKNLPPANFAKKNVPSQ FT YKWCAFDAFDGLYDPTCLASELPYDAPSEIDRMAYATFKTIQIKIANDQKGFNLNYNPN FT VTQARLPNAPLPALPEPTSD" XX SQ Sequence 6366 BP; 1922 A; 1890 C; 1334 G; 1220 T; 0 other; gaaaaccact ccaaacgaaa cgaaaagaaa ttaaaagacg aagaagacaa actgccaatt 60 gtcccctaca atcgccctgc gcgtgcggca acaatggcac tcgtttctaa agtctttgac 120 agcatcaccg acccatcctt gagggctgta ctccaagagg aagcgcactc ccaagttaaa 180 caagtgctca aagacacagc gctctactcc agatacgccc tcctccccac tgctgcaaac 240 acgcttgaac ggtacgcaat ccctcataac ccgttcagca caaaattaca cacacacgca 300 gcagcaaaag cccttgagaa tgacctctac cggacggcct catatctcct cccaaaagaa 360 agagtgtcat ttctctttat gaagccatct aaaatgcaat atttccggag aagaggagat 420 gtcgacacct tcatcaacgc tgacatcgtt gctaaagacc ttgccaggta ccctctcgag 480 actatctacc cccgcctccc ggaaatcaca acaaaaatgg cttttattgg ggacagcctg 540 cattacttcc agcctgaggt gctggagcac attttcacaa gctccccaca actggagacc 600 ctgctcgcca cgatcgtcct tccccccgaa gccacactca ggcttaaaag tctataccca 660 gaaatctaca cgttgcacta catgccccga aaatttctct acaaacctgg gggcctatca 720 ggcggggaat acgaacatga ttacaaggac ctaacttggc tcaagattgg gcatgtcaca 780 actgcttcca tgtgcctcac agtcgaccgg gtggagtcta aagcggccaa ccacttacta 840 ctcatacggc gtggaaggct caaactcagc acttacagat cttacgacac ccctgagccc 900 ttagtcgtgg tgccaaaaat attcctcccc ccaaagtata atgcacaaaa acccattact 960 aagacgaaag caaactcgtg gatcctctac gttaaatcag ctggggagcc gaagattagg 1020 gatgtttggg ccaagctcag gcagacaata gcgaactctg aactcaacca atacgagcct 1080 gcggaattgc tgctattaac caactacttc tacgtgttgg gcaagttgga ctccatcacg 1140 tccttcgaaa ctcttctcgg ggacaatata ctcaagcgcc ttttcagacc ggcgatggca 1200 aaaatccaag aactcagaca ctgggttagt ggcccaacag ccttcatgca actctacaaa 1260 gcactgcaac tcgtcgatgt agacttcact tttgaggtca ccaagaactg ggaaacaaaa 1320 caggagaacc acagcgaacc cgaactccca aaagatgcca ttgacgtgct cgtccagtca 1380 ctcatcggca tcgattacac agacgcagca attaccgaag ccgcaaaccc taaacaacaa 1440 gaaagtggac caaaacccta caccaacctc ccgcagcccc ttcagcaaac caaatgcccc 1500 gaggacacgg aaatgtccgc atcaccagaa tgcaaagcgg ctgaaactgc gcaagagacc 1560 cacaaagcag ggcccagttc aaaccccgct ctcaacactg atcaagaggc agccccgtca 1620 gaacccacag acagcaaaga gcggaagtgc cccacgttgc gtgaactgcc atggaaggcg 1680 tggctcaaac tacttcgggg ccttggcttc caaggcgacc ttgaacagtc ggacgtggag 1740 ggggacctca tttacccaat taaacacatc cggcacttac cagttgagga tttcagtggc 1800 ccgatcacag cgaccctgag gaaaatgaac cggatgccat gcaaatactc ccccgacatt 1860 gaaagagcag ccgcattcgc gcgagacgtg atgagcaata aaacaggggc catcctcccc 1920 aaacaatccc atgaatggaa gaccacactt aaaagaaaat gcaaacttgc ccctcgacaa 1980 actcttattt ccgtgataca tggcgcgggc ggcagtggta aatcaagagc cctgcaagaa 2040 tacatgagga acaacaagga ggaccccatt gtcaccatcc ttccgacgaa tgaactaagg 2100 gccgattgga aagctaaact gcccgctcat gaccctgaca tgttcatgac attcgagaac 2160 gcactgctga tcccaaaagg caacgtggtc atcatggacg attacactaa gctaccacgc 2220 gggtacatcg aggcgtacgt gcaaaactcc ccaatgctag acctgctcat actcacagga 2280 gaccccaggc aatccgaaca cttcgaatca gccgaaggga acacgatcaa cgatctcagc 2340 ccctctccag tcgtcttcag cgcgtacgcc cgctattaca tcaacgcaac tcacaggaac 2400 aaccgggacc tagcgaacgc cttgggggtt tactctgaaa aacaagggaa aacgcgaata 2460 tcagtcagta accatataga agacgggcgc cacacattag ttcctagcca aatcaaacaa 2520 agaaactacg tctctatggg caggaaaact tctacctatg cgggctgtca agggataacc 2580 gcttcacgtg tacaggtcat cattgacaac gacactgcaa agtgctcaca tcaggtccta 2640 tacacagcct tttccagggc cgcagacgaa atacacttct gcaacactat gaccgacgaa 2700 aaacaatttt gggcaaaagt gaagtgtacc ccgtacttac aagccatcct caaccttaca 2760 aaggaacact ctctgcctga cccgcagcct gagccagatg aacccttgga gcccaaagcc 2820 cctgtcaccc acattgccgt ggaaaacgtg gtaccgctag tggaagaaat cattgagcct 2880 cttccagaga agcatgaccg agagatctac tcagaaagca ccggacactc caactgcatc 2940 caaaccgaaa acgagttcat tcaggctttc caacaccaac aggcaaagga tgaaactctc 3000 ttctgggcca ccattgagaa acgcatagtc acctcaaccc ctgaatcaaa ctggactgaa 3060 tttaaaacaa agaggcccct aggtgacatc ttgtggctgg cctacaagga ggctatgtgc 3120 ttgccagcgg agcccatcaa attcgaccca gacctttggt ggaaatgtgc cgatgaggtg 3180 caaaataaat acctacaaaa accccttcac atgatcaaaa acggaatact cagacaaaac 3240 ccagactttg gggagcgtca catcgcgcta tttctaaagt cgcagtgggt aaagaaaaac 3300 gaaaaaattg ggacagtcaa cgttaaggct ggtcaaacta tcgcagcgtt ctaccagagt 3360 accgtcatga tcttcggcac gatggcgcgc tacatgaggc gtgtaagaga aaaattctgc 3420 ccaaagaaca tactaattaa ctgcgaaatt gaccagccca cagcttcaaa atgggtggac 3480 acgcattgga aattcgacag gttggcatac acaaacgact ttgaggcgta tgaccagtct 3540 caagatgggg ccatgttgca atttgaggtg atgaaagcaa ggcaccatga tctgcctgct 3600 gatttgatcg agtcctacat cgaacttaag ctgaacgcca aaatattcct aggcaccctt 3660 ggcatcatga gactcactgg agaggggcca accttcgatg ccaatactga atgcaacatc 3720 gcctacacgc atgcccgatt ccacataccc agaggcaccg cacaactgta cgctggagac 3780 gattgcgccc tcaactgcga acctgaagag agagaatcat ttaaaccttt agctgcgcag 3840 ttcaccctca aatcaaagcc ggtgaccata agacaaggaa aaggctcctg gcccgagttc 3900 tgtggcaata tcatcacccc ttacggctac ctcaaacatc ctcggaaaac atgggctgca 3960 ctgcacaagg ccaaacttca agggaaaaat gaattgaaga aaaccgccac ggcctatgcg 4020 ctcgacgtgc taccaacgta cgaactaggg gacgcaatac acgatatatt taccgacaac 4080 gagctgacat tccactacca aacaatcaga accctacata cagaagccca cactcgagtc 4140 ttcgccaacc acgatgcaat ctttggcgaa gaaggtttat tctctagtta agtaacctat 4200 tagtttaaca actaaccatg gataaccgga taactgacct actcacaaga tctggctact 4260 caagaacatc agaaccaaga ggcgccgggc agcaactggt cgtgcacgcg gtggctggtg 4320 ctggcaagac aacgctactc cgcgagatac taaataccat tccaggagtc accatacaca 4380 ctgcaggcac ccccgaccca ccaaacctca cactcaacta catcaaaggc caagagcccc 4440 cttgcccgaa gaagtacact atcttagatg agtacccagc tagagccaag tggccggagg 4500 aggcctggga catgttgatt gctgacaacc tccaacacac aggccccacg acccgccccc 4560 actatataaa acacaccacc tacagacttg gtccccaaac agtcaaaacg ttgcaaagcc 4620 ttgggtacca actggaattc caacaccggg ctgaccagca agaccagggc ttctcattca 4680 ccggactatt cgacggccca atttacggac aaccgatcac actcgacaca gcggcccaca 4740 acctggcact agctcatgga ctaccagctc tacaagcaac tcaaacgaga gggctagaat 4800 acgacaccac taccatcatc tctagcactc ctctgccaac agttaaggac aaggtgggcc 4860 tatacattgc ttttaccagg caccgaaaag cctgccatat tcgagcacct gggatcaacc 4920 ccacatgtga cgtggcctcc tctcatggac cagcctcttc atctggccag accacctgac 4980 aacacgagag cttacctagt attagctata ggagtagcga gtgcattgtt cctctataca 5040 ctaacccgta atacccttcc acacaccggc gacaacatcc accatttacc gcacgggggt 5100 aggtacgtgg acggcaccaa aggaattctc tacaacagcc ccacctcctc atacccatcc 5160 tcatctctcc cattctccat ggtcatcgca ctagccacaa cccttttcct catcaccaga 5220 aacgttctca acccagcccc caccacacct agaatctatg cgcccctctg cttgcattgc 5280 caccggaatc acccaccatg ctaaacactg acacactatg catcattctg tccatactaa 5340 tattaggcat cctatataat atacttcaac agcatctgcc cccaccatgt gaaataataa 5400 taaacgggca cactatatcc attaggggca actgctacca caccacctcc agctagggtt 5460 tgttaagttt ccttcttttg taaattaaac actaaagatg tctggagctg gaacgggaac 5520 tgggcgaggg accgggaccg gagtaggagg cactgggggc acaggtggca caggcggcgg 5580 aggaacaggt agagggcaac aagctgcagc ccagccctgg gaggcaattt ttactaagga 5640 cgacctggcc gcaatcgagc caaaacctgc ttcggcaaat gttccaaaca ctaagcagtg 5700 gatcggcatt caagctggac tcatcaaggc cggagccacg gacgcaaact tcatgaaagt 5760 actgctcggc ctcagtctcg aagctttcga caggggctca tcagaagcca ccacttggga 5820 tggaattact gagggcgtgg agcaccgtgc agcagccaac gccatcaagg aggcgaactg 5880 cccaatacac aaggtcacct actacctagc caaaccgacg ttcgccatta gacaatcgaa 5940 aaacctcccc ccagcgaact tcgcaaagaa gaatgtgcca tcacaatata aatggtgtgc 6000 gttcgatgcc tttgatggcc tgtacgatcc tacctgcctt gcctcagaac taccctacga 6060 cgccccctca gaaatagacc gaatggcgta cgctaccttc aaaactatac agatcaagat 6120 cgccaatgac cagaaagggt tcaacctcaa ctacaaccct aacgtcaccc aggctcgact 6180 ccccaacgcg cccctaccag ctcttcccga accaacatca gactaaacgt tgcatgatcg 6240 taaaacatgc ccggcttacc gtgagccgcc tttgaaagaa aggtttacac ggactctgtt 6300 gcgttacgca cgtacctaac ccgtgccagc agaataaaga ccttttggtt tctacagttt 6360 tttcca 6366 //