ID AF017780; SV 1; linear; genomic RNA; STD; VRL; 8372 BP. XX AC AF017780; XX DT 23-SEP-1998 (Rel. 57, Created) DT 23-SEP-1998 (Rel. 57, Last updated, Version 1) XX DE Sour cherry green ring mottle virus, complete genome. XX KW . XX OS Cherry green ring mottle virus OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae; OC Robigovirus. XX RN [1] RP 1-8372 RA Zhang Y.-P., Kirkpatrick B.C., Smart C.D., Uyemoto J.K.; RT "cDNA cloning and molecular characterization of cherry green ring mottle RT virus"; RL J. Gen. Virol. 79(9):2275-2281(1998). XX RN [2] RP 1-8372 RA Zhang Y.-P., Kirkpatrick B.C., Smart C.D., Uyemoto J.K.; RT ; RL Submitted (07-AUG-1997) to the INSDC. RL Plant Pathology, University of California, Davis, CA 95616, USA XX DR MD5; 10a9bcf6f6c9b40688ea538f8b4054e5. DR EuropePMC; PMC3723981; 23525699. XX FH Key Location/Qualifiers FH FT source 1..8372 FT /organism="Cherry green ring mottle virus" FT /mol_type="genomic RNA" FT /db_xref="taxon:65467" FT CDS 103..6174 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:O91632" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR003323" FT /db_xref="InterPro:IPR005123" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008041" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR037151" FT /db_xref="UniProtKB/TrEMBL:O91632" FT /protein_id="AAC35433.1" FT /translation="MALHTITPAESVLAQFSSEEASRIGASAISNFSKLEADNHSLFHY FT NLPAYAKSKLSERGFYLSPFSYETHSHPVSKTIESHLINIKLPNYINESFLIVGIKDSK FT LSVLRKDKKLRFLEALNRCVTSHDIQRYGPSFHFERARANWRRDFSEKDLSKGVESLLP FT RVLFDKGRTKDAQLFLYDELHYWSMKDIVDFLEITNAQTIIGSFVFPTEILAGVRNSLN FT PWAYDFKIKGDKLIYAPDGVWSESYEQPLASGQLLKYNKIKTRVGDYSVQVRDQIFSHC FT LVIINRDSLVNEEYRVFSDFDAVSISLISFMGGNADEVIPVRQEVILAVFKYIRTLKKP FT DLQSGMAKHRQLVDNPSGFEVRFIEDFVHFILEHNEQFNLIEQSFKNFLSAACVEKMPK FT FLRRLFSKFKGHSLGKFIEELQAFNFTIRCQHYSRFGFKNTYAEEEEEELNKNDPMIST FT LKKSSLGQLNVDTVAYPCLVYDGCCCVFTGIHVNLIGHFVKSFINAWVGCSNLGYYEAL FT IALAASIHQRGKKLFLLHDEKFMKLAILANLVNSLAFKMALKVEVTRRLRRRNAIRGLL FT RFDRLSEHPEDKRERAVTLNFSRVVSEVLELATECPVTSILAETHYITKLMGFRSNGNV FT AVGASEEGGSVQELKIPFHPENLQTGEICVDEKVKGERAPEVTKEEPPIGPDENLHSRF FT ISSIIKVGEFKDNAIRKFASDLTFENGYKHKGRTALFFSRGSFSYGFNSVTYPSQGWPA FT EFEEAYGSRFNSCLVQIYEFGSKLGFHSDDESCYDDDLEVLTVNLFGEACIAFRRVDNV FT EVLKEQVNETSQGPENYVEVKLSDGEFLLMPKGFQQGFQHSVKYASNNRVSLTFRLQSR FT DLNGKPIQCGPIQDSAKKKGVEEQYYEVMNGCSISKSKPGDICSLSVFPVKADGDCFWH FT AVSSIFGLEAMELKSLVHERALSEKCIDKICEKDFKEEMQPKVYASNASVTATCFLMNI FT KLIIKLVGADDEGFVTVEPLTESKDKISIGYLILNQRCHHFDLAVPKEGCVIRAVSEFL FT KQNPTKILSVLSANCSKELLAELMSGLGIQEFHLEEIFRVFDIKAEVCDGSELRIINKK FT GSREARFAVENDHFSYCPGVKAATNLGAFRQPHGNSIIPEDRYNDFLKSNANIVPFTPS FT LSIAKTLANSFLSGQTGVINSRIVAGQFDWLADTNKLCFDERKIGVMVGTFGSGKSHSV FT VELLKANLNYQNIIISPRRSLKDQFIGMLDLVSKRKKGKKISTEVATFEVALKKNGVLK FT KTRIFMDETQLLPPGYLDLICLVAGRDSSILVMGDPAQSSYDSAEDRMVFVGSEGNLDR FT LLKEKRYVYLSESRRFRNPMFVGRLPCTFDAGRLTLEKEEYAVFDNFKDFKADYLSPKI FT GAFLVSSFTEKTVVKANMGRNVDVYTFGESTGMNFDYVCVLLTQDSMLVDERRWVVALS FT RARINISFVNLSGLSLQEFCSQMVGGIIHKFFTSTANYNDLRALLPGDPMFSKKFMRLG FT SDEVDREARLAGDPWLKTKIFLGQRIARPEEIEVDDCNPPDLKIKVHCPVGSMGSTFAE FT VQSRVRAKENREHRIDSLITDQFAECHKGRGKILTASPDNFEAIYPRHKAGDTATFVMA FT ARKRLKFSIPAKEGQKFKAAIPYGESMLQIFLKRVKVQPNFDHKLFSEAVSDFEEKKLT FT KSMATLENHSGRSDPDWENEKALIFMKSQLCTKFDNRFRAAKAGQTLACFHHNVLCRLA FT PYIRYIEKKVFSHLPDNYYIHSGKNFDELRSWVLRNSFTGMCTESDYEAFDSSQDANIL FT AFEVSLMRYLRLPRDLIEDYKYLKFNTRSKLGQFAVMRFTGEAGTFLFNTLANMVFTFM FT RYDINGKESICFAGDDMCANKRLRKKSEFEHILDRMTLKAKVQYTTEPTFCGWRLGDFG FT IVKRPQLVQERILIALEKGNFHECIDNYAIEVSYAYNLGERLISIMSEKELDAHYFCVR FT TFLQNKCLFHSNAIKFFKEGEGCISPDRNFS" FT CDS 6174..6842 FT /codon_start=1 FT /product="helicase" FT /db_xref="GOA:O91633" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:O91633" FT /protein_id="AAC35434.1" FT /translation="MEVANEFLLDAGFVRTAFALSFPIVVHGVPGCGKSTLVRKFLDLE FT DFHAQTFGVSKPTNLSGRGVEKAPVPLQSGFNILDEYLSGPYSEGFDLFLSDPYQNFRK FT PLTAHYINSCTHRFGPSVCQFLNKLGFEIESAKEEDTELIFGKVFGGTIRGEIICFEKE FT IEELLRSHSASFHHPCDLRGAEFDDVTFISAHTDLQEIVGPDLYVALTRAKKSLTILQP FT " FT CDS 7374..8180 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:O91634" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:O91634" FT /protein_id="AAC35435.1" FT /translation="MADEEFEKNSDGTFKLDAQGKRIPKKPQAQTDPKSSNSQDPNSKK FT SDVDILRARRKRVTFNPADPTSSPSRSFINSIQETNPVTLNIASDDTVKAITSDWVEFL FT KIKQEEVFDCIFDVVLFCYHNSSSDKTKMVGKARSGVGLEDLASTIRSYCSLRSFCSKY FT APVVWNYGISNDLPPANWQRRKVVEGAKFAAFDFFEAVTSEAALQPVEGLVRNPTDKEM FT TAGASLKEISLMRDEIRRGTSSTLMTEVTGGRTGQIQPIKKIGGDE" XX SQ Sequence 8372 BP; 2423 A; 1636 C; 1916 G; 2397 T; 0 other; gaaaacaaac agaccagaac tagcacagat caccacaatc tgccctagta taggcttgct 60 ggctgccctt ctgtcctaca gaagcacaac tacaacccta taatggcctt gcacacaatc 120 actcccgcag agagcgtctt agctcaattc tcttcagaag aagctagcag gataggtgcc 180 tctgctattt caaacttctc aaaattggaa gctgacaatc attccctctt tcattacaac 240 ctgcccgctt atgcaaaaag caagctttct gagagaggtt tttacttgtc acccttttca 300 tatgagactc acagccatcc agttagtaaa acaatagagt cacatttgat taatatcaaa 360 ttacctaatt atattaatga gagttttttg attgtaggta ttaaagatag taaattgagt 420 gttttgcgca aagataagaa gctcagattc cttgaggccc taaacagatg tgtcacctct 480 catgatatac agagatatgg ccccagtttc cactttgaga gagcccgcgc aaattggaga 540 agggattttt ccgaaaagga tttgtcaaaa ggggtcgaat cccttctacc tagagttctg 600 tttgataagg gtagaaccaa agacgcccaa ctgtttcttt atgatgagct ccactactgg 660 tctatgaaag atatagttga tttccttgag attacaaatg ctcagactat tataggctcc 720 tttgttttcc caactgaaat tttggcgggg gtcaggaata gtttgaaccc atgggcttat 780 gactttaaaa tcaaagggga caaattgatt tatgcccctg atggtgtttg gtcagaatcc 840 tatgaacaac ccttggcttc cggacagctg ctcaaataca acaaaatcaa aactagagtt 900 ggggactact ctgttcaagt gagggatcaa atatttagtc actgtctggt gattatcaat 960 agggattcac ttgtaaatga ggagtaccga gttttcagtg attttgatgc tgtctcaatt 1020 tcacttatca gtttcatggg tggcaatgct gatgaagtca taccagtcag gcaggaggtc 1080 attttagctg tattcaaata tataagaact cttaaaaagc ccgaccttca atctggaatg 1140 gcaaagcacc gacagcttgt tgataacccc tcaggttttg aagttcgatt cattgaagat 1200 tttgtgcact tcatacttga gcacaatgag cagttcaact tgattgagca aagctttaaa 1260 aatttcctta gtgcagcatg tgtggagaag atgcccaaat ttttaagaag actgttcagc 1320 aagtttaaag gacatagcct gggtaaattt attgaggaat tgcaagcttt caactttacc 1380 attagatgtc agcattactc acgctttggg tttaagaaca cctatgcaga agaggaggag 1440 gaggagttga acaaaaatga cccaatgatc tcgactctca agaagtcatc tcttgggcag 1500 ttgaacgttg atacagttgc ttacccctgc cttgtgtatg acgggtgctg ctgtgtgttc 1560 acgggcattc atgtaaatct gattggtcat tttgtcaaat ctttcatcaa tgcatgggtc 1620 ggttgcagca atttaggtta ctatgaggca ctcattgctc tagcagccag catccatcaa 1680 agaggaaaaa aacttttttt gctgcatgat gagaaattta tgaagctggc catcctggct 1740 aacttagtta attccttggc atttaagatg gcattgaaag ttgaagtcac cagacggcta 1800 aggaggagga acgccatcag gggcctgcta aggtttgaca ggctatcaga gcatcctgag 1860 gataagaggg aaagagcagt gaccctaaac tttagtaggg ttgtgagtga agtccttgaa 1920 ttagctactg agtgcccagt cacttccata cttgctgaaa ctcactacat caccaaactg 1980 atgggattta gatccaatgg caacgttgca gttggtgcaa gtgaagaagg aggttccgtc 2040 caggaattga aaattccttt tcatccagaa aatctacaga caggtgaaat ttgtgtagat 2100 gaaaaggtca agggggagag ggcacctgag gtcacaaaag aggaaccacc cattggacct 2160 gatgagaatc tgcattcaag gtttatatcc agcattatta aagtgggcga gttcaaagat 2220 aatgccataa ggaaatttgc ctctgacctc acttttgaga atggctataa acataagggt 2280 aggactgccc ttttcttttc taggggatca ttctcttatg gttttaacag tgtaacctac 2340 ccttcacaag gctggccagc agagttcgag gaggcatatg gttccaggtt caattcctgc 2400 cttgttcaaa tttatgagtt tggcagcaag cttggcttcc acagtgatga cgagagctgc 2460 tatgatgatg atttggaggt cctaactgtt aacttgtttg gtgaagcttg tattgccttc 2520 agaagagttg ataatgttga ggtcctcaag gagcaggtga atgagacctc acaaggcccg 2580 gaaaattatg ttgaggtgaa actgtctgat ggcgagtttc ttctaatgcc taaggggttt 2640 cagcagggat ttcagcactc tgtcaaatat gctagcaaca accgggtttc actcacattc 2700 cggctgcaat ccagggactt gaacggtaag ccaattcagt gcggccccat tcaagattcg 2760 gcaaaaaaga agggggttga agagcaatat tatgaggtta tgaatggttg ctccatatct 2820 aaatcaaagc ctggggatat ctgtagtttg tctgtctttc ctgttaaggc tgatggggat 2880 tgcttttggc atgctgtctc atcaatcttt ggcctggaag caatggagct aaaatcatta 2940 gtgcatgaga gggctctaag tgaaaagtgc attgacaaga tttgtgagaa agacttcaaa 3000 gaggaaatgc aaccaaaagt ttatgcaagc aatgcttctg tcacagctac ctgcttctta 3060 atgaatatca agttgataat taagttggtt ggggctgatg atgaaggatt cgttactgtt 3120 gaaccgctta cagaatccaa ggataagatt tccattggct acctgattct taatcaacgg 3180 tgccatcatt ttgatcttgc ggtgcctaaa gagggttgtg tgatcagagc tgtcagcgaa 3240 ttcttaaagc aaaatccaac aaaaattctc agtgtcctca gtgccaactg ttccaaggaa 3300 ctgctagccg agctcatgag cggccttggc attcaagagt tccacttgga agagatcttt 3360 cgagtttttg acatcaaggc tgaagtttgc gatggttcag agctgagaat aattaataaa 3420 aagggttcaa gagaagcaag atttgctgtt gagaatgacc acttttccta ctgtccaggg 3480 gtaaaggcag caaccaactt gggagcattt aggcagcctc atgggaattc catcattcct 3540 gaagataggt acaacgattt cctcaagagt aatgccaaca ttgtaccatt caccccatca 3600 ctttctatcg ctaaaacttt ggccaattct ttcctctctg ggcaaacagg tgtgatcaac 3660 tccagaatag tggcagggca gtttgactgg ctggctgaca caaacaaact ttgttttgat 3720 gagcggaaaa tcggggttat ggtgggaaca ttcggttcgg gtaagagcca tagtgtggtt 3780 gagctactca aggccaattt aaattatcaa aatattatca tctcacccag gagaagcctg 3840 aaggaccaat ttataggcat gctggatctt gtgagcaaga gaaagaaagg gaagaaaatt 3900 tccactgaag ttgcgacttt tgaagtggcc ttaaaaaaaa atggtgttct taaaaaaaca 3960 agaatattca tggatgagac acagcttttg ccaccagggt atctggactt aatctgcttg 4020 gttgctggca gggactcttc tattcttgta atgggagacc ctgcacaaag tagctatgat 4080 tcagctgaag acagaatggt gtttgttggg tctgaaggta atcttgacag gcttttaaaa 4140 gaaaagagat atgtctacct aagtgagtca agaagattta gaaatcccat gtttgttggt 4200 agactaccct gcacctttga tgctggcaga ttaactttag agaaagagga atatgcagtc 4260 tttgacaact tcaaggattt caaagctgat tacttaagcc caaaaattgg agcatttcta 4320 gtcagctcgt ttacagagaa aacagttgtg aaagccaaca tgggccgaaa tgttgatgtg 4380 tacacttttg gtgagagcac aggaatgaat tttgattacg tttgtgtgct tcttacacag 4440 gacagcatgc tcgttgatga aagaagatgg gttgtggctt tatcaagggc tagaatcaac 4500 atatcttttg taaatctgtc cgggctctca cttcaagaat tctgttcaca aatggtgggt 4560 ggcataattc acaaattctt cacaagtact gccaattata atgatctgag agccttgttg 4620 ccaggcgacc ccatgttctc aaagaaattc atgcgactcg gtagtgatga agttgaccgg 4680 gaggccaggc ttgcaggaga tccctggctt aaaactaaga ttttcttagg ccaaagaatc 4740 gctaggccag aggaaattga agttgatgat tgcaaccctc ctgatcttaa aattaaagtt 4800 cattgtccag tgggttccat gggttcaact tttgctgaag ttcaaagtag agtcagagcc 4860 aaagaaaatc gcgagcatcg gattgacagt ctgatcacag accagtttgc agagtgtcat 4920 aaaggtagag gaaaaatctt aacggcatcc cctgataatt ttgaggctat ttatccaagg 4980 cataaggctg gggacactgc aacgtttgtc atggctgcaa ggaaaaggct caagttttca 5040 atcccagcta aagagggcca gaaatttaaa gctgccattc cctatggaga aagcatgctc 5100 cagatatttc tcaagagagt gaaggtgcag ccaaattttg atcataagct cttttctgag 5160 gccgtttccg actttgaaga aaaaaaattg accaaatcca tggcaacact agagaatcac 5220 agtggacggt ctgatcctga ctgggaaaat gaaaaagctt tgatatttat gaaaagtcaa 5280 ctttgcacaa agtttgacaa cagattcaga gcagccaaag ctgggcaaac ccttgcttgc 5340 tttcatcata atgtgctttg tcgtcttgct ccatacatca ggtatattga gaaaaaggtt 5400 ttctctcacc tacctgacaa ttattacatt cattcaggca agaattttga tgagctgagg 5460 agctgggtgt tgagaaactc tttcactggg atgtgcactg agtctgacta tgaagccttt 5520 gactcttccc aagatgccaa catattggca tttgaagtta gtctgatgcg ctacttaagg 5580 ctcccaaggg acttaattga ggattacaag tatctgaagt ttaacaccag atctaaactt 5640 gggcagttcg ctgtgatgag atttactggg gaagcaggca cttttctgtt taataccctt 5700 gcaaatatgg ttttcacgtt catgaggtat gacataaatg gtaaggaatc catctgcttt 5760 gctggtgatg atatgtgtgc taacaagcga ttgagaaaga aaagtgaatt cgagcacata 5820 cttgacagga tgacccttaa agccaaagtc cagtacacaa ctgagccaac tttttgtggc 5880 tggcgcttgg gagattttgg aattgtgaaa aggccccaac ttgttcagga gcgaatcctc 5940 atagctctgg agaaaggaaa ctttcatgag tgtatagata attacgctat tgaggtttcc 6000 tacgcctata atttaggtga gaggctgatc tccataatgt ctgaaaaaga attggatgct 6060 cattattttt gtgtcaggac ctttttgcag aataagtgcc tgtttcattc aaatgctatc 6120 aagttcttca aggaggggga aggttgtatt agtccagata gaaactttag ttaatggaag 6180 tagctaatga atttctttta gatgcaggtt ttgttagaac agcatttgca cttagttttc 6240 ctattgttgt gcatggtgtg cctggttgcg ggaaatcaac tcttgtcagg aagtttttgg 6300 atcttgagga ctttcacgcc caaacttttg gagttagtaa acctacaaat ctttctgggc 6360 gcggtgttga gaaggctcct gtaccacttc aatcagggtt caacattttg gacgaatatc 6420 tgtctggacc ttacagtgag ggctttgatc tgtttctttc cgatccttat cagaattttc 6480 gcaagcctct tactgctcat tacatcaaca gttgcactca tcgctttggc ccttcagttt 6540 gccaatttct taacaagctt gggtttgaga tagaatctgc aaaagaggag gatacagagc 6600 ttatttttgg taaggtgttt ggtggcacaa taagaggtga aatcatctgt tttgagaagg 6660 agattgagga acttttgagg agtcattcag ctagtttcca ccacccttgt gaccttcgtg 6720 gggctgagtt tgacgacgtt accttcattt ctgctcacac tgatcttcaa gagatagttg 6780 ggcctgattt gtacgtggca ctcacaaggg ccaagaagag cctcacaata ctgcagccat 6840 agatgagcct taggcctcca acggattttg gcaagccatt actgtttgcg gctgccggcg 6900 tctctttggc cctgctcatt gcagcttaca aaagtcacta cttaccaccc gtaggcgaca 6960 acattcattc tctaccacat ggtggtcact actcagatgg gactaaaagc ataagctaca 7020 acggtttgaa ttgccaacag aatcacagcc agaacctctt atcaagcacc agcaagttga 7080 tcccgcttac cttagttttc gttgtgagct ttttgattta tgtctccagt aaatttggca 7140 ataggtctcc tagcattcag cattactgca ttcatcatcg ctagtttcaa ttcaagtcct 7200 agtaatagtt gcatggtttt gattactggc gagagagcgt tagtcaccgg ttgtgaaata 7260 acaccagact tgtctgatct tgtcaaacag ttgaagcctc attcacatag cttaggtttt 7320 tagcactaat actgatttgt atttgtgtgt gattagacta caattcattt taaatggctg 7380 atgaagaatt tgagaagaat tcagatggaa ctttcaagct cgatgctcaa gggaaaagaa 7440 tcccaaagaa gccacaggcg cagacggacc ctaagtcctc caactctcag gacccgaatt 7500 ccaagaaaag tgacgtcgac atactgcgag ccagaaggaa aagagtcact tttaacccag 7560 ctgatcccac ctctagtcct agcagaagct ttatcaattc tattcaagaa acgaacccag 7620 ttacactcaa tatcgcctct gatgacaccg tcaaggcaat cacatcagac tgggttgaat 7680 ttctcaaaat taaacaggaa gaggtctttg actgcatctt tgatgttgtc ttgttctgtt 7740 accacaacag ctctagcgac aaaacaaaga tggttgggaa agctaggagt ggggttggac 7800 ttgaagatct tgccagcaca attaggagct actgttctct tcgcagcttt tgttcaaagt 7860 atgctccagt agtgtggaat tatggaataa gcaatgactt accaccagct aactggcaga 7920 ggcgcaaggt tgtggagggt gcgaagtttg cagcctttga cttttttgag gctgtcacta 7980 gtgaagctgc actacaacca gtagaagggc ttgttagaaa tcctactgac aaggagatga 8040 ctgcaggggc atctcttaaa gagatcagtc tgatgcgtga tgagatccga agaggcacca 8100 gttctacctt aatgactgag gttactggag gcaggactgg ccaaattcag cccattaaga 8160 aaattggtgg tgatgaatga taaacccctg caattccact cttgcaagag tgcccgtttg 8220 agtaacacgg ggcgaagcta aagttattca ctatctgcag ttattttttt ttcctgctag 8280 tttccaagtt taaataaaac ttaaaggtct tcaaacataa tatgaagact ggctataggg 8340 ttttaaaata ttttccttca gtttccttag ag 8372 //