ID AF016914; SV 1; linear; genomic RNA; STD; VRL; 6227 BP. XX AC AF016914; XX DT 03-OCT-1997 (Rel. 52, Created) DT 16-JUN-2001 (Rel. 68, Last updated, Version 2) XX DE Cymbidium mosaic virus Korean type 2, complete genome. XX KW . XX OS Cymbidium mosaic virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-6227 RX PUBMED; 9638650. RA Kim J.D., Koo Y.B., Chang M.U.; RT "Genome characterization of a Korean isolate of cymbidium mosaic virus"; RL Mol. Cells 8(2):181-188(1998). XX RN [2] RP 1-6227 RA Kim J.D., Koo Y.B., Jang M.U.; RT ; RL Submitted (01-AUG-1997) to the INSDC. RL Department of Microbiology, Inje University, 607 Obangdong, Kimhae, RL Kyungnam 621-749, South Korea XX DR MD5; 4be5c913c9ffa810e9b49446b7802ad2. XX FH Key Location/Qualifiers FH FT source 1..6227 FT /organism="Cymbidium mosaic virus" FT /strain="Korean type 2" FT /mol_type="genomic RNA" FT /db_xref="taxon:12178" FT CDS 74..4327 FT /codon_start=1 FT /gene="RNA pol" FT /product="RNA replicase" FT /db_xref="GOA:O37153" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:O37153" FT /protein_id="AAB71853.1" FT /translation="MARVRDTLDRLRDPSVLTSINEEAHRHIRPVLASALVNCPYALTE FT EEADCLENLGVTVNPFAIQTHTHAAAKTEENRMLEIVGTHLPKEPSTFIFLKRSKLRYL FT RRAANNKDIFQNQHIEPKDLLRYDDESCEVMPECSTSTAYISDALHFLSYAQLGKIFQD FT SPKLKIQLATLVLPVESLHRHPSLHPAIYTLNYHKDGFEYIPGNHAGGAYFHEYSTLQW FT LTLGKLIIDDPLKVKKPLTLTVQLIESLGANHLLLITRGDLRTPKLRTFARDTHVLLPQ FT IFHPKGMNANKPLSKRRAMQLWLYAKSVKEVSERDLYAKVRQLIPTSELDLFDPVEVTH FT LVNYLLFISHLSSVSSYDDILSSNIFQHFTIPIKNKIRELAQLFTGADQFNQLLKALDW FT QTFSYSMPVETIHTRAANYQVAKTLRMCRDLPCDEYDRVKDVLRQLPDGVTLFEENDKQ FT DPSSPEAEDSEDDTDSVDFNLSPTHELPPNFDSLHKGKSIIFDTDNPSTSTAPAVTFAV FT GINSSASTNISFGSFTPEAEATPPPPMEKLPWDLWIPLLEQHGFKGKSKLYKPTGELIC FT PITEIKTVPHCPFPDKVPDGCVLALKSIKRFATKMTMLSSRASAYTSDIKNNRTGKLLP FT AMNMPWKASLAYVTQHGDREIPGVVIHGAGGCGKSYAIQKWLRSCSDPCAATVVCPTLE FT LRNDWLNKIGSYEQTNIKTFEKALIQPVNNVVIFDDYTKLPPGYIETMVYHHHNLDLII FT LTGDPMQSAYHETNRDAYISLIPDASAIFSEYCEFNINATHRNVAELACLLGVYSERQG FT KLTVSFSTAPLSKGKVPILVPSRMKQEAFADVGNRCMTYAGCQGLTAPKIQILIDNHTT FT FCSEQTLYTCLSRAVDQIHFINTGPNSQAFWTKLESTPYLKAFLDNYREEQTERLASTA FT PEPEVREPAAPKTHIPVESTSGLRISALDLPEKHSREIFNKAHGFSNAIQGDGVAPMFQ FT HQQAKDETLFKATIDARLSITHPDENKREFAMKKDTGDVLFVNYKAIMNLPHEPVPFEP FT RLWNICKAEVQNTYLAKPIANLINGTLRQSPDFPANKIALFLKSQWVKKIEKIGAIPVK FT PGQTIASFMQETVMLYGTMARYLRKMRQRYQPAHIFINCEKTPEDFNKFILEHWSYKQV FT AHTNDFTAFDQSQDAAMLQFEVIKARYFNIPEDVIEGYIQIKLTAEIFLGTLSIMRLSG FT EGPTFDANTECSIAYNATRYHINEDVTQVYAGDDMAMDHVCPEKKSFKALEKKLKLTSK FT PLYPKQKPGDWADFCGWTITPYGIIKNPKKLDACLQLHTQLGDADKVARSYALDAKYAY FT DLGDRIHEVLDVDEMTSHFNVIRQLHKLHQQDVLVPPETTVATAVKSQPDMEDLWLRAL FT SFPDWTDRAQLLKRG" FT CDS 4333..5034 FT /codon_start=1 FT /gene="MP1" FT /product="MP1" FT /note="movement protein 1" FT /db_xref="GOA:O37154" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:O37154" FT /protein_id="AAB71854.1" FT /translation="MELAYLVRLLEHNKFERTNLPLSSPLVVHGIAGSGKSTILTTFHH FT HYPAHPIFSHSPTLLDPSNRIYQQCITTDSVPDGAIVDEYNYKALDYSRCLALFGDPLQ FT LPHSLRPHYYSSRTHRYGPKLTSLLNDLFHLSITSLAPVDNLDYADPFAVDPSGFTIAD FT EEVYNFVSQQVPGTLLPLDTVGLEYSSVSFYCSDLRRCVVLRPLSTFIALTRAKGNLTI FT FDFNARFSSTT" FT CDS 5009..5347 FT /codon_start=1 FT /gene="MP2" FT /product="MP2" FT /note="movement protein 2" FT /db_xref="GOA:O37155" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:O37155" FT /protein_id="AAB71855.1" FT /translation="MPGLVPPPDHSKSLFVLAIGITVVSALFVLKSHTFPIAGDNIHRF FT PSGGQYKDGTKQINYCPPTHARYPKYPDYKWLARTAAIVIPLCLYISYHPGNNIRRICP FT CCNTYHHP" FT CDS 5202..5477 FT /codon_start=1 FT /gene="MP3" FT /product="MP3" FT /note="movement protein 3" FT /db_xref="GOA:O37156" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:O37156" FT /protein_id="AAB71856.1" FT /translation="MLGTRNILTTSGLPVPPPLSSLSAYIFPTILAIIFAVFALVAIHI FT TTPEPFCTIHIDGASITITNCPDPAAILDKVAIGPWLGLSYHNNLK" FT CDS 5480..6151 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:O42052" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:O42052" FT /protein_id="AAB71857.1" FT /translation="MGESTPTPAATYSAADPTSAPKLADLAALKYSPVTSSIATPEEIK FT AITQLWVNNLGLPADTVGTAAIDLARAYADVGASKSATLLGFCPTKPDVRCAALAAQIF FT VANVTPRQFCAYYAKVVWNLMLATNDPPANWAKAGFQEDTRFAAFDFFDAVDSTAALEP FT AEWQRRPTDRERAAHSIGKYGALARQRIQNGNLITNIAEVTKGHLGSTNTLYALPAPPT FT E" XX SQ Sequence 6227 BP; 1654 A; 1823 C; 1219 G; 1531 T; 0 other; ggaaaaccaa acctcacgtc tactccgcta tccgagcgaa atagcagccc cagcataggc 60 aatatcgcgc tccatggccc gagtacgtga cacccttgac aggctccgtg atccgtcggt 120 ccttacctca attaacgagg aagcccaccg acatatccgc cctgtccttg cctcggcact 180 cgtaaactgc ccttacgcgt tgaccgagga agaggccgac tgtctcgaaa atctcggcgt 240 gacagtcaat cccttcgcca tccaaacgca tacacatgct gcagctaaaa ctgaagaaaa 300 tcgcatgttg gaaattgttg gcacccacct ccctaaagaa ccttccacct tcatattcct 360 taagcggagc aagcttcgct acctacgacg cgccgccaac aacaaagaca tatttcaaaa 420 ccaacacatt gagcctaaag acttattgcg ttacgatgac gagtcttgtg aagtgatgcc 480 agaatgctcc acaagcacag cctacatcag cgatgctctc catttcttga gctacgctca 540 gcttgggaaa atattccagg attctcccaa gctgaaaatc cagctggcaa ccctggtcct 600 ccccgtggaa tccctccata ggcacccatc tcttcatcct gccatctata ctttgaacta 660 ccacaaagat ggctttgaat atatacccgg caatcacgcc ggaggtgcct atttccacga 720 gtactccact ctgcagtggt tgactctcgg gaaactaatt atcgacgatc ctttgaaagt 780 aaagaaaccc cttactctta ctgtacagct aatagaaagt ctaggggcca accatctttt 840 acttatcacc cgaggggatc ttcgcacacc caaactaagg acattcgcta gagataccca 900 tgttctacta ccacaaatat tccatcctaa gggtatgaat gcgaacaaac cattgtccaa 960 acgtagagct atgcagttgt ggctctacgc caaatctgtt aaagaggtga gcgaacggga 1020 tctttatgct aaggtgaggc aattgatccc gacttccgag ttagaccttt ttgaccctgt 1080 ggaggtgacc cacttggtca attacttact attcatcagt cacctttcct ccgtatcttc 1140 gtatgacgac atcttgtcgt ctaatatatt ccaacatttc actattccaa tcaagaacaa 1200 gatacgggaa ttggcccagc tattcaccgg agcggaccaa tttaatcaac tgctcaaagc 1260 tctcgactgg caaacatttt cgtactctat gccagtagag accatccata cacgcgcggc 1320 caattatcaa gtcgctaaaa cgcttcgcat gtgcagagac ctaccatgcg atgaatatga 1380 tcgtgtaaag gatgtcctca gacagctccc tgacggagtg acgttgtttg aggaaaacga 1440 caagcaagat ccctcaagcc ctgaagccga ggactctgag gacgacactg actccgtcga 1500 cttcaacctt tcccccactc atgaattgcc cccaaacttt gattctctac acaagggcaa 1560 gtccattatc tttgacactg acaacccctc aacttctacg gcacctgccg tcacttttgc 1620 tgtcggtatc aactcctcag cctccacaaa tatttcattt ggaagcttca cacccgaggc 1680 tgaggccacc ccccctcctc ccatggaaaa gttaccatgg gatctttgga ttcccctact 1740 ggaacaacat ggctttaaag gaaagagtaa gctgtacaag cccacgggtg aactaatctg 1800 ccccataact gaaatcaaaa cagttcccca ctgccccttt cccgataaag tcccggatgg 1860 ctgtgtgctt gcgcttaaat ctattaagcg tttcgccaca aaaatgacta tgctcagttc 1920 tcgagcttcc gcctacactt ctgacattaa gaataatagg actgggaagc tcctacccgc 1980 catgaacatg ccctggaaag cctctctcgc ctatgtcact caacatggtg atagagaaat 2040 tcctggcgtc gtgatccatg gtgccggtgg ctgtggcaaa tcttatgcca tccaaaaatg 2100 gttgagaagc tgctctgatc cttgtgcagc tactgtggta tgcccaactc tagaactacg 2160 taatgactgg ctcaacaaga tcggaagcta cgaacaaacg aatattaaaa ctttcgagaa 2220 agctttaatt cagccagtca acaacgtagt tatctttgat gactacacca agctaccccc 2280 tgggtacatt gagaccatgg tgtaccatca ccacaacctc gacctgatca tattaactgg 2340 ggatcctatg cagagtgcct atcatgaaac taacagggat gcctatatct ctttaatacc 2400 tgatgcctct gccattttta gtgagtactg tgagttcaac atcaacgcca cccaccgtaa 2460 tgtggctgaa ctcgcttgcc tcctcggcgt ctattccgaa cgccaaggca aactcactgt 2520 ttccttcagc acagccccac tttctaaagg taaagtaccc attctggtac cctctagaat 2580 gaagcaagag gcttttgctg atgtcggcaa ccgttgcatg acttacgccg gttgccaggg 2640 tctcactgcc cctaaaatcc aaattctgat agacaaccac actacgttct gctctgaaca 2700 aacattatac acttgtctat cacgagctgt ggaccaaatc cacttcatta acactggtcc 2760 caactcgcag gctttctgga ccaaattgga atcaacgccg tacctaaaag ctttcctcga 2820 taattaccgt gaggaacaaa ctgaacggct agcatctacc gccccagagc ctgaagtccg 2880 tgagccagca gccccaaaaa cgcatatccc tgtcgaaagt acatctggct tacgtatttc 2940 tgcacttgac ctgccggaaa agcactctcg cgagattttc aacaaggcgc atggcttttc 3000 caatgctatt cagggagatg gcgtagctcc catgttccag catcaacagg caaaggacga 3060 aacccttttc aaggctacca tagacgctag actctctata acacatcctg atgaaaataa 3120 aagagagttt gccatgaaga aagacactgg ggacgtcctt tttgtcaatt acaaagctat 3180 aatgaatcta cctcatgagc ctgttccttt tgaacctcgt ctctggaaca tctgcaaagc 3240 tgaagtgcag aacacatacc tagccaaacc cattgcaaat cttatcaatg gtaccttaag 3300 gcaatcacct gattttccag ccaataaaat agccttattc ctgaaatcac aatgggtaaa 3360 gaaaattgag aaaattggag ccataccagt taaacctgga cagactattg catcatttat 3420 gcaagagact gttatgctgt atggcaccat ggcacgctac ctccgtaaga tgcggcaaag 3480 atatcaaccc gcacatatat ttatcaattg tgaaaagact ccggaggact tcaataaatt 3540 catacttgaa cactggtcat acaagcaagt tgcccacact aacgatttta ctgcttttga 3600 ccagtcacaa gatgctgcca tgctccaatt tgaagttatc aaagctaggt acttcaatat 3660 ccccgaggat gttatagagg gatacatcca aattaagctc actgctgaaa tcttcctcgg 3720 gacactctcc atcatgcgcc tatctggtga agggccaacc ttcgacgcca acactgaatg 3780 ctctattgcc tacaacgcca ccagatacca tattaatgaa gacgtcaccc aagtatacgc 3840 cggtgacgac atggctatgg accatgtgtg ccctgagaag aagagcttca aagctttgga 3900 aaagaaactg aaattgacct caaaacctct ctatccaaag caaaaacctg gagactgggc 3960 cgatttctgc ggctggacta taacgcctta tggcatcatt aagaatccta agaaacttga 4020 tgcatgccta caattgcaca cccaactggg cgacgccgat aaagtcgcta ggtcatacgc 4080 actcgatgcc aaatacgctt atgatctggg cgaccgcatt catgaggttc tggatgttga 4140 tgaaatgacc agccacttca atgttataag acagttgcac aaactgcatc aacaagatgt 4200 gctggtccca cccgagacta ccgtagccac agcggtaaag tctcaacctg acatggagga 4260 tctgtggctc cgtgcgctta gcttccctga ctggacggac cgcgcccaac ttttaaaacg 4320 gggttaattt tgatggagct agcgtactta gttagactac tagagcacaa taaattcgag 4380 cgcaccaatc tgcccctttc ctcaccctta gttgtacacg gaatcgctgg cagtggaaaa 4440 tccaccatcc tcacaacttt ccatcaccat tacccggctc accctatctt ctcacacagt 4500 cccacattgc ttgaccctag caaccgcata taccaacagt gcatcactac tgattcggtg 4560 ccagacggtg ctatcgtaga cgagtacaat tacaaagcac tcgactactc tcgctgtcta 4620 gccctctttg gtgatccact ccagcttcca cattcacttc gaccccacta ctactctagt 4680 cgcacccacc gctacggtcc caagctcacc agcctactca acgacctctt ccacctttct 4740 atcacttctc ttgcccccgt cgacaacctt gattacgctg atccttttgc tgtcgacccc 4800 tctggattta ccattgctga cgaggaagtg tataactttg tctctcagca ggttcccggc 4860 actttgttgc cgctcgatac tgtaggttta gaatattcta gtgttagctt ttactgcagt 4920 gatctccgac gctgcgtcgt actaaggcca ctcagcacct tcatcgctct cacccgcgcc 4980 aagggcaacc tcaccatctt cgatttcaat gccaggttta gttccaccac ctgaccactc 5040 caagtcactt ttcgtccttg ctattggtat aactgtggtc tccgcattat tcgtgctaaa 5100 gtcccacact tttccaattg caggcgacaa tattcaccgc ttcccctccg gcggccaata 5160 taaagacggt actaagcaga taaactactg tccacctact catgctaggt acccgaaata 5220 tcctgactac aagtggcttg cccgtaccgc cgccattgtc atccctctct gcctatatat 5280 ttcctaccat cctggcaata atattcgccg tatttgccct tgttgcaata catatcacca 5340 cccctgagcc cttctgtacc atacacatag acggggcgtc tattactatc actaactgcc 5400 ccgatcctgc agctatatta gataaagtag ccataggccc ctggctaggg ttaagttacc 5460 acaataattt gaaataatca tgggagagtc cactccaact ccagctgcca cttactccgc 5520 tgccgacccc acttctgcac ccaagttggc cgacctggct gcccttaagt actcacctgt 5580 cacctcctcc atcgccaccc ccgaagaaat caaggccata acccaattgt gggttaacaa 5640 ccttggcctc cccgccgaca cagtaggtac cgcggccatt gacctggccc gcgcctacgc 5700 tgacgtcggg gcgtccaaga gtgctaccct gctcggtttc tgccctacga aacctgatgt 5760 ccgctgcgcc gctcttgccg cgcagatctt cgtggccaac gtcacccccc gccagttttg 5820 cgcttactac gcaaaagtgg tgtggaatct gatgctggcc actaacgatc cgcccgccaa 5880 ctgggccaag gctggtttcc aggaggatac ccgatttgcc gcctttgact tcttcgatgc 5940 cgtcgattcc actgccgcgc tggagcccgc tgaatggcag cgccgcccta ctgaccgtga 6000 acgtgctgcg cactcgatcg ggaagtacgg cgcccttgcc cgtcagcgta tccaaaacgg 6060 caacctcatc accaacattg ccgaggtcac caagggccat cttggctcca ccaacactct 6120 ctatgctctg cctgcacccc ctactgaata acgccaaact taataaggcg tgtggttttc 6180 taaagtttgt ttccactact ggcataatac gtttagccag ataattt 6227 //