Dbfetch
ID AF016626; SV 1; linear; genomic RNA; STD; VRL; 7977 BP. XX AC AF016626; XX DT 11-SEP-1997 (Rel. 52, Created) DT 11-SEP-1997 (Rel. 52, Last updated, Version 1) XX DE Peach rosette mosaic virus RNA1 polyprotein gene, complete cds. XX KW . XX OS Peach rosette mosaic virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus. XX RN [1] RP 1-7977 RA Lammers A.H., Ramsdell D.C., Allison R.F.; RT "Cloning and Sequencing of Peach Rosette Mosaic Nepovirus RNA1"; RL Unpublished. XX RN [2] RP 1-7977 RA Lammers A.H., Ramsdell D.C., Allison R.F.; RT ; RL Submitted (31-JUL-1997) to the INSDC. RL Botany and Plant Pathology, Michigan State University, Wilson Rd, East RL Lansing, MI 48824, USA XX DR MD5; d7f9f584e1594ac07721cd08d04d0939. DR EuropePMC; PMC2861173; 20229114. DR EuropePMC; PMC3314827; 22218961. XX FH Key Location/Qualifiers FH FT source 1..7977 FT /organism="Peach rosette mosaic virus" FT /chromosome="RNA1" FT /isolate="Michigan grapevine" FT /mol_type="genomic RNA" FT /db_xref="taxon:65068" FT CDS 53..6505 FT /codon_start=1 FT /product="RNA1 polyprotein" FT /function="proteinase cofactor, NTP-binding protein, VPg, FT proteinase, RNA dependent RNA polymerase" FT /db_xref="GOA:O37086" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR014759" FT /db_xref="UniProtKB/TrEMBL:O37086" FT /protein_id="AAB69867.1" FT /translation="MEYLDYLPARTKWVAIVPKAVLEATRIANVLLAKPANFAISFLAQ FT GASLKPRSVALAVAMGYCHWPRVLHLYSEGVPLTWGDAPPVPLLLRALAKMESGLYADG FT RGTGFLPVQEASASPAGRQQAVEEKKALYRAKGAAATASKKAAARAALEARRSCGGQGR FT APKVLKKKATKRVVTAALATVKESQRLALFFLFPLLSFPLPLSSVKRGFLLILLNGRIF FT FPLLLLLWWLCKSPLSYGSYCGPWASLGPILETGAPGAQRALFAAIRKLPLSTFHERVL FT FRDTQVAVSQLFVLYPSVHILGDLNSFFLQDCRGMRLALESARRIADGISSILPQHRVV FT HTFLDAVKNVGSYISGAASAVKSKVSNFTSSLFDSILDKCKYCFMSTFSPFLASLQSAK FT AEIEKFWQNCMSWARNLWSKAHLALQALGLYAIWALVLTILCGIVYLLESLFITAGVIG FT SHGIILSIFLSVVMAAAGFTIFTVGKESAQMIRTMREGILMMVIPDDAAKSIGGRTRYP FT TVHSLFDLAMAPVNFLESIASGLSLFSTSSITVLGKLGNSLEGIRKGYNCLTDFISIFF FT EKMGGLWEGISGKQTTFFRDLTTAVKINISSWTQDARRLIEYHEMAGTLDKFEYEKVRL FT LFIKGRIVDTANKGRQSHTSNQFLRVVGSLLTDLREVRAKCARSLRFDGWRRQPFWVYI FT FGASQCGKSTLANYLCPLLLAHMGWDAHDVYSKDPTEGYWSGYYQQKCLKMDDLSAVVP FT KQVSPLEQQLIPLISTEEKMVSAAEINGKGIQFLSELVISSSNVNDAPTSCEILDPEAY FT RLRRKVLLRCRRAATYQHDEAGNKTEVVDAEGNIVCRQYDPSDALACTEVSGYMPILVL FT GSRTSRTVAPAHSTIPLIKDAMDAHFLVEDAKREAWVQQTNMHSRTGAEVSSYLQSLVC FT ALGSYKAIQRSSDVSDAGERKFLVAVDGTIYSIDSLGRATKEAADAYDNVEALESTTLL FT QYRLDFRQVREHSLLTNDGSFHSSMVRDLLRISCEEACVVSVDKISRDSKQLHRDLWSE FT LKLANDFFPRFSKALNQLRDQPHFKVDVQSVSFSIWLILEMPLLIIGKNSSFFQSYLLV FT GACIMEFFVLDKTFLSGSVGFGSALALKNQLDVHSSVASSGSIATQSYARSIPIVWAKV FT ARYANVHSQVEESSHFNFFEDGLAHLLVRLVGTSGLCETAILFGSRAIALCAHQIRMFP FT DHDRVTVHYLDKARIAKCFPMTWHWVNAIEEKDTEVCVYRDDQLTPLPVYPDSIYLKGE FT TQLPSAVNINRVSIKKRRYYEDASLTPDERLLDGESPIIRSWSNVAALSTSVQTISNPA FT PGIAYKRDLNRYLTSSYAAGVHDCGGLISILHQGRRKVVGLHVAGTRVGHLFSSTISFL FT PHGNFSDVHSQGDFFIPEVGDREAGYEKIGFIDNSAKAHILVPLPNWAGYLLILKPLQL FT LMRRRKENFVDAGETFEIKEPAILSKKDPRLEDPDSFDPLRTGMSKFANPMSVLDEALL FT EAVCEDIFTTWYDALPAVTDNQGNVSRILLEKTSLDIALNGVPGDAYLEPMKLDTSEGY FT PHCVRRGPGESGKRRFVEIDDDFHFSLKPDTDVFKNYQALSGTISQQVPVLNCVECLKD FT ECLKKRKVATPRLFDVMPFEHNILLREYFLNFSAFIQANRIYLSACVGTNPYSREWTTL FT YDRLAEYSDTGLNCDYSKFDGLISHQISRGWLQPSTVFLETVRKQILRVGNLLLMFIGR FT RSICGRQVYMVRGGMPSGCALTVVINSIFNEILIRYVYRKVTPAPACNFFNKYVRLMVY FT GDDNLLTIKEEVIPFFDGPVIKREMASVGITITDGTDKSSLTLERKPLASLEFLKRGFR FT VQENGLVVAPLDKTSMYTRLFYLPLALMAFIPGYFSKGNVKSFLEEIVLHPNHRREFYR FT VRNFYVSKAPHWGISCLHMALLLIFIIGSRRPIPPTRRNGFLNASHGGEHKMMAGQDCQ FT TRPFGVTSRLAILVVEPKFQGVVNTLLWRAVSSLRGGERGIALKWRLPLERVSYLNSNV FT VNSFSLHHETSDSFLKDLHEGCHLYLGSRCTLITWVVCIAAEFAKAQGLSTSSVIALFE FT EYKPRKGGDIAPLLAERSYKRFAQRPIFDMSSIKQHLAAS" XX SQ Sequence 7977 BP; 1963 A; 1619 C; 1900 G; 2495 T; 0 other; tatgaaaaat catatcgtct tactcacaag gctttctttt gcttcttttg tgatggaata 60 tttggactat cttcctgcgc gaacaaaatg ggtggccata gtgccaaaag ctgtcctgga 120 agccaccagg atagctaatg tcctgctagc aaagcctgcc aactttgcta tttctttttt 180 ggctcagggt gcctccctga agccacgttc tgtagctctg gcggttgcaa tgggttattg 240 ccactggccc agagttctgc atctatactc cgaaggagtt cccctaactt ggggagatgc 300 accaccggtg ccccttttat taagggccct ggctaagatg gaatctgggc tatatgccga 360 tgggagagga actggctttt tgccagttca agaggcaagt gcctcacctg cgggccgcca 420 gcaagccgtc gaagagaaaa aggctcttta cagagccaaa ggtgctgcag caacagcatc 480 gaaaaaggct gctgctagag cagccttgga agcccgccgt tcctgtggcg gacaaggaag 540 agcgcctaaa gtactgaaaa agaaggccac caagcgggtg gtcactgctg cactggcaac 600 agtcaaagag agccaacgct tggctctatt tttccttttt cctcttctct cttttcctct 660 ccccctctcc tccgtgaaaa gggggttcct tttaatcctc ctcaacggga ggattttctt 720 tcctctcctc ctcctccttt ggtggctttg taaaagccca ctttcttatg ggtcctattg 780 tggaccttgg gcctctcttg gccctatttt agaaactgga gctccaggag ctcaacgggc 840 actttttgcc gctattcgaa aactccctct ctctactttt cacgagagag ttctcttccg 900 ggatactcaa gttgcagtgt cccaactttt cgttttgtat ccctctgtac atatacttgg 960 ggatcttaat tcttttttcc ttcaggattg ccgtggcatg cgtttagcac tggaaagtgc 1020 tcgacgtatt gcagatggta tttcctccat tcttcctcag catcgggttg tacatacttt 1080 tcttgatgca gtgaagaatg ttggttccta tatttcagga gctgcctctg cagttaaaag 1140 taaagtttct aactttacct cttcactctt tgattctatt ttggacaaat gtaaatattg 1200 tttcatgtcc actttttctc ccttcttggc ttctctgcaa tcagccaaag ctgaaattga 1260 aaaattttgg caaaattgca tgagttgggc taggaacttg tggagtaagg ctcaccttgc 1320 tctacaagct cttggccttt atgccatttg ggctttagtg ttgacaatcc tttgtgggat 1380 tgtttattta ttagaatctc tttttattac tgcgggggta ataggctccc atggtattat 1440 tctctctatt tttctttccg tggttatggc tgcagctgga ttcactatct ttaccgttgg 1500 taaagaaagt gctcaaatga ttcggacaat gcgcgagggt attctcatga tggtaatacc 1560 cgatgatgcc gctaagtcga ttggaggtag aaccaggtac ccaacagtgc atagtctttt 1620 tgatttggct atggcacctg taaatttttt ggagtccatt gctagtggac tttctctttt 1680 ttccacctcc tcaattacag ttttaggtaa attggggaat tctttggaag gtattcggaa 1740 aggctataat tgcctgaccg attttatttc cattttcttt gagaagatgg gaggtctatg 1800 ggaaggtatt tctggtaagc agaccacctt ctttcgagat ctcaccacgg ctgttaagat 1860 taatatcagt tcgtggaccc aggatgctcg tcggttaatt gaataccacg agatggctgg 1920 taccctggat aagttcgagt acgagaaagt tcgcctctta tttatcaagg gaagaatagt 1980 cgatactgcc aataagggca ggcaatccca taccagcaac caatttttga gagttgttgg 2040 ttctttgttg acagatttga gggaggtgcg tgctaagtgc gctcgttccc tccgttttga 2100 tggttggcgt cgtcaacctt tttgggttta tattttcggt gcatcacagt gtggtaagtc 2160 cactttagcc aactatttgt gccccctttt attggcacat atgggttggg atgctcatga 2220 cgtctactcc aaggatccca cagaaggata ctggagtgga tactaccagc agaaatgttt 2280 aaagatggat gatctttctg cggtagtgcc taagcaggta tctcctcttg agcaacagct 2340 cattcccctt atttctacgg aggagaaaat ggtatctgca gctgagatta atggcaaggg 2400 aattcagttt ttatctgaat tggtcatatc cagctcgaat gtgaatgatg cacctacatc 2460 gtgtgagatt cttgatcctg aagcatatcg cctaaggaga aaggttctct tacgctgtag 2520 acgtgcagcg acttaccagc atgatgaagc tgggaacaag actgaggtag ttgatgctga 2580 gggaaatatt gtgtgtcgac aatatgatcc cagtgatgca ttagcttgca ctgaagtcag 2640 tggctacatg ccaattcttg tactcggttc caggaccagc aggactgtgg cacccgccca 2700 ctccaccatt cctctcatta aggatgccat ggatgcgcat ttcttagtag aggatgccaa 2760 aagagaagcg tgggtgcaac aaacaaatat gcactcgcga actggagctg aggtctccag 2820 ctatttgcaa tccttagtgt gtgcactggg ctcttataaa gccattcagc gctcttccga 2880 cgtttcagat gcgggggagc gtaaattttt ggtagctgtt gatggaacta tttattccat 2940 cgattcttta ggtagggcga ccaaggaagc ggcagacgcg tacgacaatg ttgaggcatt 3000 ggagtccact acccttctgc aatatcgcct tgattttcga caggttaggg aacattccct 3060 cttaaccaat gatggtagtt tccattcctc tatggtgagg gatctactaa ggatatcttg 3120 tgaagaagct tgtgtggtct ctgttgataa aatcagtagg gattccaaac aacttcacag 3180 ggacttgtgg agtgagttaa agcttgcgaa cgattttttt ccgcgtttct caaaagctct 3240 taaccaactg cgcgaccaac cacattttaa ggttgatgtg cagtcagttt ccttcagcat 3300 atggctgatt ttagagatgc cattgttgat aataggcaaa aattcttctt tttttcagag 3360 ctatcttttg gtgggggctt gcatcatgga gttttttgtc cttgataaaa ccttccttag 3420 tggatctgtg ggatttggga gtgctttggc tctcaaaaac caattggatg tacatagctc 3480 tgttgcttct tctgggtcta ttgcaactca gtcatatgca cggagcatac caattgtatg 3540 ggcaaaagta gctcgctatg ccaatgtcca ttcacaggtt gaggagtcga gtcatttcaa 3600 tttttttgaa gatggcctgg cgcacctttt agttagattg gtgggtacta gtggtctttg 3660 tgagactgct attttgtttg gttccagagc tattgctctg tgtgcccatc agatacgcat 3720 gttcccagat cacgaccggg ttactgtgca ttatttggac aaagcccgga ttgcaaagtg 3780 ctttcctatg acatggcatt gggtaaatgc tattgaggaa aaagatacgg aggtgtgcgt 3840 ttatagggac gaccaattaa cgcctctccc tgtctatcca gattccattt atcttaaggg 3900 tgagacacaa ttaccgtctg cagttaatat aaatcgagtt tccataaaga agcgaagata 3960 ttatgaggac gcttctttga cgcctgatga acgattactg gatggtgaaa gtccaattat 4020 acgttcgtgg agtaacgtcg ctgccttgag tactagtgtg caaacaattt caaaccctgc 4080 acctggtatt gcatacaagc gtgatttaaa tcgctacctg acatcctcgt atgctgcggg 4140 ggtgcatgat tgtggtggtt taatatccat tttgcaccaa ggacgacgca aggttgtggg 4200 gttgcacgta gcaggaacta gagttggaca tcttttttcg tccactatta gtttcttgcc 4260 acacggcaat ttttccgatg ttcattctca gggagatttt tttatacctg aggtaggtga 4320 tcgagaggct ggttatgaga aaataggatt tattgataat tcagccaaag cccacatact 4380 agtaccacta cccaattggg cagggtacct actaattttg aaaccccttc aacttttgat 4440 gaggaggagg aaagaaaatt tcgtcgatgc tggtgaaaca tttgaaataa aagagccagc 4500 aattctttca aaaaaagatc ctcgtcttga ggatcctgat tcttttgacc cattgcggac 4560 tgggatgagc aaatttgcaa atcctatgtc tgtacttgat gaagctttgt tggaagcagt 4620 ttgtgaggac atttttacca cttggtatga tgccctccca gctgttactg acaaccaggg 4680 gaatgtttct cgtattttat tagagaaaac ttctttagat atagcattga atggagttcc 4740 aggagatgct tatcttgagc caatgaaact tgacacttct gagggttatc cccattgtgt 4800 caggcgaggt cctggtgaga gtggaaagcg tcgatttgtt gagatcgatg atgatttcca 4860 tttttctttg aagcctgata ccgatgtttt taaaaactat caggcgcttt ctgggactat 4920 ttctcaacaa gtcccagtcc tcaattgcgt agagtgcttg aaagatgaat gtctcaagaa 4980 aaggaaagtg gctaccccac gcctttttga tgtgatgcct tttgagcaca atattctctt 5040 gcgggaatat tttttgaatt tttccgcttt tattcaggct aaccggattt atctttccgc 5100 ttgtgttgga accaatcctt attctcgaga gtggactaca ctctatgata gattagcaga 5160 gtattccgat actggcttga actgtgatta ttccaaattt gatggtttaa tttcccatca 5220 aatatctcgt ggatggctgc aaccatcaac cgtgttttta gagacggtga ggaagcaaat 5280 tctgcgcgta ggaaatctcc tactcatgtt cattggtcgc cgctctattt gtggtagaca 5340 agtgtatatg gttaggggcg gtatgccttc tggctgtgct ttgacagtcg ttataaatag 5400 tatttttaat gaaattttaa ttaggtatgt ttataggaag gttacacccg cacctgcttg 5460 taattttttt aacaagtatg tgcgcctcat ggtgtacggt gacgacaatc ttctcaccat 5520 taaagaggag gtaattcctt tctttgatgg tccagtgatc aagagggaga tggctagtgt 5580 tggtatcacc attacggatg gcactgacaa gagttcattg actcttgaga ggaaacctct 5640 agcatctctt gaatttttga agagaggttt tagagtgcag gagaatgggc ttgttgttgc 5700 ccctttagat aagacttcaa tgtacacgcg gcttttttat ctaccgctgg cattgatggc 5760 atttatccct ggatattttt cgaagggaaa tgtcaagagt tttttggagg agattgtttt 5820 gcaccccaat caccgccgag aattttaccg ggtgcgtaat ttttatgtga gcaaggcccc 5880 acattggggg atatcttgcc tacatatggc gctgctgttg attttcatta tcggcagcag 5940 acgaccaata ccccctacca gacgcaacgg ctttttgaac gcgtcacatg gaggggaaca 6000 taaaatgatg gctggacagg attgccagac cagaccattt ggggtaacaa gtcgtctagc 6060 tatcttggta gtagaaccca agttccaagg ggtagtcaac actttattgt ggcgtgcggt 6120 ttcgtccctt cgtgggggtg agcgtggcat tgcattaaag tggagactgc ctctggaacg 6180 ggtgtcttac cttaactcaa acgtggttaa tagtttcagc cttcaccacg aaacgagcga 6240 ctcttttttg aaggacttac atgagggatg tcacttgtat ttaggttcga gatgtaccct 6300 tattacatgg gtggtgtgca ttgcagcaga atttgctaag gcccaggggt tgagcacatc 6360 cagtgttata gctctgtttg aggagtataa acccagaaaa gggggggata tagctcccct 6420 tttagctgag cgctcctata agaggttcgc tcaaagacca atatttgata tgtcaagtat 6480 taagcagcat ctagctgctt cctaagcgca gggggtctct tagcgccagt ttctagtcct 6540 gtaggctaga ggtcttgtgg gcctaaccca catccaagag gttgtcatca attagcattt 6600 taccttcggg ttgaagatgt gaatggaaga gtgatgccct tccagacctc tcctttggag 6660 aaccatgagt caacacatgg tcttggaggt cacagttccg attctaactg tgtgctttta 6720 ccaattttaa agaaatggaa gagtaggaga tgctcttgtg tgatgagtgt gtagatacct 6780 tcatgttgct cattacaaca cattaatgaa ttcattaata gttatgtgtt tgtggtggca 6840 tgttgggtgt gtttatctat acatgatttg aaaatctcaa atgactaggg agaaagatcc 6900 tgtaggtgtg gaaatcaccc gctttgttgg agagccaatt ccaactcttt gctaccttca 6960 agaaaggaga ttgtactggt gaaattccag tccttatatt tattgctttc taggacttga 7020 gtcttttagt tttgcaatct tgcagagttg ctttagtaga tctgcacgtg aagtgcgtca 7080 acgttatggc gtaatagtgt gttgtgtctc ccacacaata agtaatgaga caacgctggg 7140 ttagatcccg ggagggtggt tccctctgac aacatttgtg ctttagtaga taagcaccct 7200 tttcttccag tcttactgag gcaggatatc aaaagtaggc ttgcagatta tagatttgtg 7260 gttaactgat tagactttga gtaattgtaa gaactatcca taagattatc ttggattgtt 7320 taatactctc atgcttatca gctctttcca tgaatactac tgcgataccg ctggcgtatt 7380 ctagttttaa agacggtatg ctgcttccag catataaaag cagatatagt agccataagc 7440 atgatggtta agctaaattc accgatgagt cggaggagcc atcatgtgta caataggggg 7500 aagcccctat ggcaaattat ctgtatagga gccctttgct ggggttaaaa gcttaaggtt 7560 tagtgtaaca caacattggg tgtactcaag agcgtgtggg gtggcaccca cgtgcttgga 7620 tgaggtccgg aaatgaatac cgggggataa ttaatcccag ctcaggcact aagctgactt 7680 tcatggaagt gtccatgacg cattttaagg taggttttag acataacctc ccgggatgga 7740 agtgattacc atttcgttat tcgttattag tttcttgcaa ctatgatgag gggaccacat 7800 cttaagcgat gttgctgcat tgcgtaccta tggtcatctg gttagttgtc gtattttctt 7860 ttagcttttg tggcgacaga tgaggtttga ctccttttcc ttgactcttg acctaagttg 7920 gacacaaaaa tatggtcttt tgactttcaa tagagtcgat gaaaatgtct gcatcac 7977 //