ID AF015682; SV 1; linear; mRNA; STD; VRL; 4233 BP. XX AC AF015682; XX DT 20-JUL-1998 (Rel. 56, Created) DT 28-JAN-1999 (Rel. 58, Last updated, Version 2) XX DE Rice ragged stunt virus polymerase mRNA, complete cds. XX KW . XX OS Rice ragged stunt virus OC Viruses; dsRNA viruses; Reoviridae; Spinareovirinae; Oryzavirus. XX RN [1] RP 1-4233 RA Zhou G., Lu X., Shen X., Wu J., Gong Z.; RT "Sequence, expression and activity analysis of segment 1 dsRNA of RT Philippine isolate of rice ragged stunt virus"; RL Unpublished. XX RN [2] RP 1-4233 RA Zhou G., Lu X., Shen X., Wu J., Gong Z.; RT ; RL Submitted (23-JUL-1997) to the INSDC. RL Shanghai Institute of Biochemistry, Academia Sinica, 320 Yueyang Road, RL Shanghai 200031, P. R. China XX DR MD5; d0050d6ed3838692c99e96bee22ed389. XX FH Key Location/Qualifiers FH FT source 1..4233 FT /organism="Rice ragged stunt virus" FT /chromosome="segment 1" FT /isolate="Philippine" FT /mol_type="mRNA" FT /db_xref="taxon:42475" FT CDS 27..4100 FT /codon_start=1 FT /product="polymerase" FT /note="derived from conceptual translation with partial FT peptide sequencing" FT /db_xref="UniProtKB/TrEMBL:O89328" FT /protein_id="AAD09324.1" FT /translation="MTPRAIIYPSLRAIFCFLSRIKCIIAGLQSKTHLINNVMHYMLII FT TCLTSFNRNYMIIIARPATGFNLKKLYCQMFERSGKFELGTNSRGCSRRWCARRVVDSL FT FASLLRFFTEVHASPAFLQQKSRRLRFAVASEDPFLVTANAQYALRGRKIGEIPYLFTD FT DGADAIKDAVIHIQPCTLILFTPHVGVHRVQPGKRIHAVFGDDNRLMQFLLPGQKFFFQ FT YLLCRFQIAALDIPSVITVQAQHIKKIADGIGVSVAKHYIDAGDRTRRVEFTRCFRQWR FT EIFPCTLRTGIRFVGNTPHHHAWVGFCHALSPLSSPVNALAEFPRSLPLRCKILSACCP FT AFETNAQTRGLKPDGGSFINHQRCHVHLPSRASLQRKGNARYGRSWPQSSPLMRGRGTI FT STLSNPLPRKSASSSRPKPVKYNGLWLIRNCSPFTATDRMPTRSGQISHSVWLLAVTHS FT SSRSLSPGCQRCGFTTCKVPLVPCPVATTCRSASRSSTLTSPLATTCQSTDAWLQSCAT FT CVTTVISSTQVFGVVSSITLRWIPAQLKKSWKQDCFFLPFSSVITIPGGIVCQFSSLFT FT QTVIRTLFPAITYGVTSASNGVSPPSCSITSRLRDYRPTLCGNESPHRNAARYAGLPNL FT SVSRLRADTRRCPHNYEYLHRRTDRSNCLAQQLPGFLVTRFPTNADQFHSFRDPDRMPT FT GRRVFSFHGLGFLQDGRTIVDLQASEYCNSSYTVKIQQHQLQKNKKQELPLRKTVRKKI FT DHAKATKIRKTDLQYAAILYMIHLNRKTHGILKQNSCHPQTKASIDPPPNKSQYRLGTS FT TQFRDNIFKERNQLDWIDFVSRVLIPFRPKRRENNRIWLPNKAQRTARMDITNSNSKTQ FT EFFVVKEDSKIQEDAFRSKRTKKKSFFRANNPPKRVNDKFIPRIAKEVSTARNNSKISS FT KPRSLEQLYPCANPSLLPPRNQNPRKGQGRVLCAAQARFQIRGIYKPNLPRTCQQSPDK FT IQAMTHPASHGNTAKPQEMAGDKDAAKASARAHQGTRSFLPRPADKLKIPAKTHPEDRG FT LARRRTGEQAYPNGQQGASSPMEEGGRVSLGRERDQSIDGQLLLGSKRCEREVPSWCRW FT KGSTFKLTELGNSAMDNAKLQYYSKPEFPNPDGALNDAAKKSNSICWPARPMAWLVSEK FT FRPFFFLMESRRRGNLIPLIQWPGRKKGGVGWGGVGGREIYSLLFNPDKLICVCVSMMM FT TAMLIAPRVSDHRLLAALTKSAARRLELKRIQKESLFLFFLVGFLSFRALLSLPASPSV FT LASTAPAHRSPRPALSGAPSSATASGIRTELEFPRSFKHLAIKFLKIESCCRSCEDYHI FT ISVELRLALQTRHR" XX SQ Sequence 4233 BP; 1161 A; 1087 C; 982 G; 1003 T; 0 other; gataaatctc cgatctagta acatagatga caccgcgcgc gataatttat cctagtttgc 60 gcgcgatatt ttgttttcta tcgcgtatta aatgtataat tgcgggactc caatctaaaa 120 cccatctcat aaataacgtc atgcattaca tgttaattat tacatgctta acgtcattca 180 acagaaatta tatgataatc atcgcaagac cggcaacagg attcaatctt aagaaacttt 240 attgccaaat gtttgaacga tcggggaaat tcgagctcgg tacgaattcc cgaggctgta 300 gccgacgatg gtgcgccagg agagttgttg attcattgtt tgcctccctg ctgcggtttt 360 tcaccgaagt tcatgccagt ccagcgtttt tgcagcagaa aagccgccga cttcggtttg 420 cggtcgcgag tgaagatccc tttcttgtta ccgccaacgc gcaatatgcc ttgcgaggtc 480 gcaaaatcgg cgaaattcca tacctgttca ccgacgacgg cgctgacgcg atcaaagacg 540 cggtgataca tatccagcca tgcacactga tactcttcac tccacatgtc ggtgtacatc 600 gagtgcagcc cggcaaacgt atccacgccg tattcggtga tgataatcgg ctgatgcagt 660 ttctcctgcc aggccagaaa ttctttttcc agtaccttct ctgccgtttc caaatcgccg 720 ctttggacat accatccgta ataacggttc aggcacagca catcaaaaaa atcgctgatg 780 gtatcggtgt gagcgtcgca aaacattaca ttgacgcagg tgatcggacg cgtcgggtcg 840 agtttacgcg ttgcttccgc cagtggcgcg aaatattccc gtgcaccttg cggacgggta 900 tccggttcgt tggcaatact ccacatcacc acgcttgggt tggtttttgt cacgcgctat 960 cacctctttc atcgcctgta aatgcgcttg ctgagtttcc ccgttcactg cctcttcgct 1020 gtaaaattct ttcggcttgt tgccccgcct tcgaaaccaa tgcccaaaca agagggttaa 1080 agccggacgg cggcagtttc atcaatcacc agcgatgcca tgttcatctg cccagtcgag 1140 catctcttca gcgtaagggt aatgcgaggt acggtaggag ttggccccaa tccagtccat 1200 taatgcgtgg tcgtggcacc atcagcacgt tatcgaatcc tttgccacgc aagtccgcat 1260 cttcatcacg accaaagcca gtaaagtaca acggtttgtg gttaatcagg aactgttcgc 1320 ccttcactgc cactgaccgg atgccgacgc gaagcgggca gatatcacac tctgtctggc 1380 ttttggctgt gacgcacagt tcatcgagat cactttcacc cggttgccag aggtgcggat 1440 tcaccacttg caaagtcccg ctagtgcctt gtccagttgc aaccacctgt agatccgcat 1500 cacgcagttc aacgctgaca tcaccattgg ccaccacctg ccagtcaaca gacgcgtggt 1560 tacagtcttg cgcgacatgc gtcaccacgg tgatatcgtc cacccaggtg ttcggcgtgg 1620 tgtcgagcat tacgctgcga tggattccgg cacagttaaa gaaatcatgg aagcaagact 1680 gctttttctt gccgttttcg tcggtaatca ccattcccgg cgggatagtc tgccagttca 1740 gttcgttgtt cacacaaacg gtgatacgta cacttttccc ggcaataaca tacggcgtga 1800 catcggcttc aaatggcgta tcgccgccct catgctccat cacttcgcga cttcgtgatt 1860 atagacccac actttgcggt aatgagtcac cgcatcgaaa cgcagcacga tacgctggcc 1920 tgcccaacct ttcggtatca agacttcgcg ctgataccag acgttgcccg cataattacg 1980 aatatctgca tcggcgaact gatcgttcaa actgcctggc acagcaattg cccggctttc 2040 ttgtaacgcg ctttcccacc aacgctgatc aattccacag ttttcgcgat ccagaccgaa 2100 tgcccacagg ccgtcgagtt ttttcatttc acgggttggg gtttctacag gacggacgga 2160 ccatagtgga tctgcaggct tcagaatact gcaattcgag ctatacggtc aagattcagc 2220 agcaccagtt gcagaagaac aagaaacaag agctaccact tagaaagact gtcagaaaaa 2280 aaattgatca tgccaaagca accaaaatta gaaaaacaga tttgcagtat gcagctatac 2340 tatatatgat tcatctcaac aggaaaacac atggaatctt aaagcaaaac agttgccacc 2400 cccaaacaaa agcaagtatt gatcctccac caaacaaaag ccagtacaga ttgggcacaa 2460 gcacacagtt cagagataat atttttaaag aaagaaatca acttgattgg attgattttg 2520 tctcaagagt actgattcca ttcagaccca agaggcgaga aaataatagg atttggcttc 2580 ccaataaagc acagcgcact gcaagaatgg acatcacaaa ttcaaattcc aagactcaag 2640 agtttttcgt agtaaaagaa gatagcaaaa tccaagaaga tgcttttcgt agtaaaagaa 2700 caaaaaaaaa gagttttttt cgcgctaata atccaccaaa acgagtaaac gacaaattca 2760 ttcctcggat tgcaaaagaa gtgagcacgg cacgcaataa cagcaagatc tcaagcaaac 2820 cacggagctt agaacaactt tatccatgtg caaatccaag cttactacca ccacgtaacc 2880 aaaaccccag gaaaggacag gggagagttc tgtgcgcagc acaggcacgg tttcagatca 2940 gaggaatcta taaacccaac ttgccaagaa catgtcagca gagcccagac aagattcagg 3000 cgatgacgca cccggcgagt cacgggaaca cagcgaaacc gcaagaaatg gcgggggaca 3060 aggacgcggc taaggcgagc gctcgagctc atcaggggac acggtctttt ctaccgcggc 3120 cagcagataa gctcaaaatc ccagcaaaaa cccacccaga ggacagaggt ttagcacgga 3180 gaagaacagg agagcaagca taccccaatg gtcaacaggg agcaagcagt ccaatggagg 3240 agggagggag ggtttctctg ggacgggaga gggaccaatc aatagacggg cagctgctcc 3300 taggctccaa gcgctgcgag cgtgaggtgc cgagctggtg cagatggaag gggtccacgt 3360 tcaagctgac ggagcttgga aactcggcaa tggataatgc caaattacag tattactcaa 3420 aaccagaatt tccaaatcct gatggcgcac tcaatgatgc ggcaaaaaaa tccaatagca 3480 tatgctggcc tgccagacca atggcatggc tggtttcgga aaagttcaga cctttttttt 3540 ttctaatgga gtctagaagg aggggaaacc taatccccct aatccaatgg ccggggagga 3600 aaaagggtgg ggtggggtgg ggtggggtgg ggggaaggga aatatactcg ctacttttta 3660 atccggacaa gctcatttgc gtttgcgtct caatgatgat gactgcaatg ctgatcgcac 3720 ctcgggtgtc ggatcaccgg cttttggctg ctctcaccaa atcagctgca agaagattag 3780 agctcaaaag aatacagaaa gagagccttt ttcttttctt ccttgtgggg ttcctttcat 3840 ttcgtgctct cctttctctg ccagccagtc cgtccgtcct tgcgtccact gcacctgcac 3900 acaggtcacc ccgacccgca ctgtcaggcg caccatcgtc ggctacagcc tcgggaattc 3960 gtaccgagct cgaatttccc cgatcgttca aacatttggc aataaagttt ctaaagatag 4020 aatcctgttg ccggtcttgc gaagattatc atataatttc tgtagaatta cgtttagcat 4080 tgcaaacccg ccatcgataa taattcaaga aaacaaaata tcgcgcgcaa actaggataa 4140 attatcgcgc ctttttacgg ttcctggcct tttgctggcc ttttcgtcac accatgtctg 4200 ttattgctgg ccatatacac aggatccaag tgc 4233 //