ID   AF012300; SV 1; circular; genomic DNA; STD; VRL; 2597 BP.
XX
AC   AF012300;
XX
DT   23-AUG-1997 (Rel. 52, Created)
DT   15-APR-2005 (Rel. 83, Last updated, Version 6)
XX
DE   Tomato mottle Taino virus component A, complete sequence.
XX
KW   .
XX
OS   Tomato mottle Taino virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2597
RX   DOI; .1094/PDIS.1997.81.9.1095C.
RX   PUBMED; 30861977.
RA   Ramos P.L., Guerra O., Peral R., Oramas P., Guevara-Gonzalez R.,
RA   Rivera-Bustamante R.;
RT   "Taino Tomato Mottle Virus, a New Bipartite Geminivirus from Cuba";
RL   Plant Dis. 81(9):1095-1095(1997).
XX
RN   [2]
RP   1-2597
RA   Ramos P.L., Oramas P., Guevara-Gonzalez R., Rivera-Bustamante R.;
RT   ;
RL   Submitted (02-JUL-1997) to the INSDC.
RL   Ingenieria Genetica, CINVESTAV Irapuato, Apdo Postal 629, Irapuato, Gto
RL   36500, Mexico
XX
DR   MD5; 47f0bf77e8d86951b7637485f04fd871.
DR   EuropePMC; PMC110531; 9811744.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2597
FT                   /organism="Tomato mottle Taino virus"
FT                   /segment="component A"
FT                   /mol_type="genomic DNA"
FT                   /note="isolated from Cuba"
FT                   /db_xref="taxon:223358"
FT   gene            189..944
FT                   /gene="CP"
FT   CDS             189..944
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:O36621"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:O36621"
FT                   /protein_id="AAD09665.1"
FT                   /translation="MPKRDRTWRSIAGTSKVSRNANYSPRTGSGPIGNKASEWVNRPMY
FT                   RKPKIYRMMRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCVSDVTRGNGITHRVGKRF
FT                   CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMYDNEPSTATV
FT                   KNDLRDRYQVMHRFHTKVTGGQYASNEQALVRRFWKVNNHVVYNHQEAAKYENHTENAL
FT                   LLYMACTHASNPVYATLKIRIYFYDSILN"
FT   gene            941..1339
FT                   /gene="AL3"
FT   CDS             complement(941..1339)
FT                   /codon_start=1
FT                   /product="AL3"
FT                   /db_xref="GOA:O36622"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:O36622"
FT                   /protein_id="AAD09666.1"
FT                   /translation="MDSRTGELITAHQAENGVYIWEIQNPLYFKMYRVEDLLFTRTRVY
FT                   HAQIRFNHNLRRALHLHKAYLNFQVWTTSTTASGSTYLARFRFLVNMYLDQIGVISINN
FT                   VIRAVRFATNRAYVNYVLENHSIKFKFY"
FT   gene            1086..1475
FT                   /gene="TrAP"
FT   CDS             complement(1086..1475)
FT                   /codon_start=1
FT                   /product="transactivator protein"
FT                   /db_xref="GOA:O36623"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:O36623"
FT                   /protein_id="AAD09667.1"
FT                   /translation="MRCSSPSQPPSIKIAHRQGKKRAIRRRRVDLQCGCSIYFHLNCAG
FT                   HGFTHRGTHHCTSGGEWRVYLGNTKSPLFQDVQSRGLAVHQNQGIPRTNTIQPQPEESV
FT                   ASPQSLPELPSLDDIDDSFWINIFS"
FT   gene            1387..2472
FT                   /gene="rep"
FT   CDS             complement(1387..2472)
FT                   /codon_start=1
FT                   /product="replication associated protein"
FT                   /note="AL1, Rep"
FT                   /db_xref="GOA:O36624"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:O36624"
FT                   /protein_id="AAD09668.1"
FT                   /translation="MPRKGSFSVKAKNYFLTYPQCSLSKEEALSQIQNLNTPVDKKFIK
FT                   ICRELHENGEPHLHVLVQFEGKYNCTNNRFFDVVSPTRSAHFHPNIQGAKSSSDVKTYI
FT                   TKDGDTLEWGEFQIDGRSARGGQQSANDSYAKALNAGNVQSAMAVLKEEQPKDFVLHNH
FT                   NIRSNLERIFAKAPEPWVPPFPLSSFTNVPDEMQEWADVYFGAGSAARPNRPMSIVIEG
FT                   DSRTGKTMWARALGPHNYLSGHLDFNTRVYSNDVQYNVIDDIAPHYLKLKHWKELLGAQ
FT                   RDWQSNCKYGKPVQIKGGIPAIVLCNPGEGASYKDFLSKDENTSLRDWTIKNAMFITLT
FT                   TPLYQDSTQARQEEGNQETAC"
XX
SQ   Sequence 2597 BP; 650 A; 583 C; 602 G; 762 T; 0 other;
     ggccatccgc tataatatta ccggatggcc gcgcgaaatt tccccccttt ttcgggtttg        60
     ggctctcttt aatttgcacg accaatcata atgcgtcttc taggcttagt tatgtacaac       120
     aacttgggcc tgaagttgtt gggcctttat aaattaaaga gtattcggcc cactatcttt       180
     aattcaaaat gcctaagcgc gatcgtacat ggcgttctat cgcgggaacc tcaaaggtta       240
     gccgcaatgc taactactcg cctcgtacag gaagtgggcc gataggtaac aaggcatccg       300
     aatgggttaa taggcccatg tacaggaagc ccaagatcta ccggatgatg aggacccccg       360
     atgtgcccag aggatgtgaa ggcccatgta aggtccagtc ctacgaacag cgccatgata       420
     tttcacatgt cgggaaggtc atgtgtgtct ctgacgtgac acgtggtaat ggcattaccc       480
     atcgtgtggg caagcgcttc tgtgttaagt ctgtgtatat tctaggcaag atatggatgg       540
     atgagaacat caaactgaag aaccacacga acagcgtcat gttttggcta gtacgagacc       600
     ggagacctta tggaactccc atggatttcg gacaggtgtt caacatgtac gacaacgagc       660
     ccagtactgc cactgtgaag aacgacctcc gggatcgtta ccaagttatg cacaggttcc       720
     atactaaggt gactggtggt cagtatgcga gcaacgagca ggctctggtt cgacggttct       780
     ggaaagtgaa caaccacgtg gtgtacaatc accaggaagc cgcgaagtac gagaatcata       840
     cggagaacgc cctattattg tatatggcat gtactcatgc ctctaatcct gtatatgcaa       900
     cgcttaagat ccggatctat ttttatgatt cgatcttgaa ttaataaaat ttgaatttta       960
     ttgaatgatt ctccagtaca taatttacat atgctctgtt tgttgcgaat cgaacagctc      1020
     taattacatt gttaattgaa atgacgccta tctgatctaa atacatatta actaaaaatc      1080
     taaacctagc taaatatgtt gatccagaag ctgtcgtcga tgtcgtccag acttggaagt      1140
     tcaggtaggc tttgtggaga tgcaacgctc tcctcaggtt gtggttgaat cgtatttgtg      1200
     cgtggtatac cctggttctg gtgaacagca agtcctctac tctgtacatc ttgaaataaa      1260
     ggggattttg tatttcccag atatacacgc cattctccgc ctgatgtgca gtgatgagtt      1320
     cccctgtgcg tgaatccatg tcccgcacag tttaagtgga agtatatgga gcacccgcac      1380
     tgcagatcaa cacgccgtct cctgattgcc ctcttcttgc cttgcctgtg tgctatcttg      1440
     atagaggggg gttgtgaggg tgatgaacat cgcattcttg atagtccagt ctctgagaga      1500
     tgtgttctcg tctttgctga ggaagtcttt atagctggca ccctcaccag gattgcaaag      1560
     cacgattgct gggattccgc ctttaatttg aactggctta ccgtacttgc agtttgattg      1620
     ccaatctctc tgggccccca gcaattcttt ccagtgcttt agctttagat aatgcggtgc      1680
     gatgtcatca atgacgttat actgcacgtc gtttgaatag accctggtat tgaagtccaa      1740
     atgtccactc agataattat gtgggcctaa cgcacgcgcc cacatcgtct tccctgtcct      1800
     tgaatcacct tctatgacaa tactcatggg tctatttggc cgcgcagcgg aaccagctcc      1860
     aaaataaaca tccgcccact cttgcatctc atcgggaacg ttagtgaaag acgagagggg      1920
     aaacggagga acccatggtt ccggagcctt ggcgaatatt ctttctagat ttgagcggat      1980
     gttatgatta tgcaggacaa aatcttttgg ctgttcttct tttaaaactg ccatggcaga      2040
     ctgaacattt cctgcattta acgcctttgc atatgaatcg ttagctgatt gttgacctcc      2100
     cctagcagac ctaccgtcga tctggaattc tccccattcc agtgtgtctc cgtccttggt      2160
     aatgtatgtt ttgacgtcgg agctggattt agctccctgt atgttcggat ggaaatgtgc      2220
     tgacctggtt ggggagacca catcgaagaa tctgttattc gtgcagttgt atttgccttc      2280
     gaattggaca agcacgtgga gatgaggttc cccattttca tgcaactctc tgcagatctt      2340
     gatgaatttc ttgtctactg gtgtgtttag gttttgtatt tgggaaagtg cttcttcttt      2400
     actaagggaa cactgtggat acgtgaggaa ataatttttg gctttaactg agaaagaacc      2460
     cttccgtggc atatttgtaa atatatgatg ttcccccaat tgctctctct cacaaaactc      2520
     atatcaattg ggggaactgg gggaacattt atactacaac cctctataga acttttaatc      2580
     tcattcatac acgtggc                                                     2597
//