ID AF007881; SV 1; circular; genomic DNA; STD; VRL; 2701 BP. XX AC AF007881; XX DT 20-JUL-1997 (Rel. 52, Created) DT 31-AUG-2025 (Rel. 144, Last updated, Version 10) XX DE Maize streak virus - [Set], complete genome. XX KW . XX OS Maize streak virus OC Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; OC Geplafuvirales; Geminiviridae; Mastrevirus; Mastrevirus storeyi. XX RN [1] RP 1-2701 RX DOI; 10.1007/s007050170107. RX PUBMED; 11504417. RA Schnippenkoetter W.H., Martin D.P., Hughes F.L., Fyvie M., Willment J.A., RA James D., von Wechmar M.B., Rybicki E.P.; RT "The relative infectivities and genomic characterisation of three distinct RT mastreviruses from South Africa"; RL Arch. Virol. 146(6):1075-1088(2001). XX RN [2] RP 1-2701 RA Schnippenkoetter W.H., Hughes F.L., Rybicki E.P.; RT "Complete nucleotide sequence of an infectious clone of a novel maize RT streak virus grass-infecting strain"; RL Unpublished. XX RN [3] RP 1-2701 RA Schnippenkoetter W.H., Hughes F.L., Rybicki E.P.; RT ; RL Submitted (12-JUN-1997) to the INSDC. RL Microbiology, University of Cape Town, PB Rondebosch, Western Cape 7701, RL South Africa XX DR MD5; e7c22bdb62d1fb6f8932f6aff0e56b55. XX FH Key Location/Qualifiers FH FT source 1..2701 FT /organism="Maize streak virus" FT /strain="Setaria" FT /mol_type="genomic DNA" FT /note="infectious, leafhopper-transmissible clone" FT /db_xref="taxon:10821" FT misc_feature join(1..151,2628..2701) FT /standard_name="long intergenic region (LIR)" FT gene 152..457 FT /gene="MP" FT CDS 152..457 FT /codon_start=1 FT /gene="MP" FT /product="movement protein" FT /note="V1" FT /protein_id="AAB63454.1" FT /translation="MDPQSAIYTLPRVPTAAPTTGGVSWSHVGEVAILSFVALICIYLL FT YLWVLRDLILVLKARRGRSTEELIFGSEAVDRRHPIPNTLEPTAPVHPGPFVPGQG" FT gene 468..1202 FT /gene="CP" FT CDS 468..1202 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /protein_id="AAB63455.1" FT /translation="MSTSKRKRADEAQWNKRSTKKKGSAPQAKKPGGKVEKPSLQIQTL FT LHSGDTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKVGVDYHFVADAASCKYSNR FT GTGVMWLVYDTTPGGNAPTTQDIFAYPSALKAWPTTWKVSRELCHRFVVKRRWLFTMET FT DGRIGSDTPPSNQSWPPCKRNVDFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYLVIAP FT GNGITFTAHGQTRLYFKSVGNQ" FT misc_feature 1200..1369 FT /standard_name="short intergenic region (SIR)" FT gene 1367..1801 FT /gene="RepB" FT CDS complement(1367..>1801) FT /codon_start=1 FT /product="replication-associated protein B" FT /protein_id="AAB63457.1" FT /translation="FNQQADYGTRKRSLYIVGPTRTGKSTWARSLGRHNYWQNNVDWSS FT YNEDTIYNIVDDIPFKYCPCWKQLVGCQKEFVVNPKYGKKKKVQMKSKPTIILANSDED FT WMKEMTPGQLEYFEANCMIYVMQPGEKWYSPPELPPTEEV" FT gene 1708..2526 FT /gene="RepA" FT CDS complement(1708..2526) FT /codon_start=1 FT /product="replication-associated protein A" FT /protein_id="AAB63456.1" FT /translation="MTSSSSNRPFSHRSPNTFLTYPQCPEQPEIISQRIWDLCSHWTPL FT YIICAREAHRDGNQCLHALIQTEKPVRTTDSRFFDIDGFHPNIQSAISPNKVRDYITKE FT PLALFERGTFIPRKKSFLGNSSKGNSDKKPSKDEIMRDIISHATSKQEYLSMVQKSLPY FT DWSTKLQYFEYSANKLFPDIQEEFINPHPTSEPDLLCNESIKDWLQPNIYQVSPQAYLL FT LQPNCYSIDDAISDLEWLDDLTSKQIMEQGSAASTSSVQQGQENLHGPEA" XX SQ Sequence 2701 BP; 674 A; 616 C; 714 G; 697 T; 0 other; acctcgcccc ctttacctgc gagggcccgg tagggaccga gcgtctttga tttaaagctc 60 agatttgctt ttgtcgtgaa atatcaaagc tgccttgttt aaagaagccg tcccacgcga 120 ctataaattg tctcacaagt gcgattcagc catggatcct cagagtgcta tctatactct 180 cccacgggta cccacagcag ctccgaccac cggaggtgtg tcgtggagtc acgtcggcga 240 ggtagctata ctgagctttg ttgctttgat ttgcatttat ctgctttacc tttgggtgtt 300 gagagacctt atcttagtct tgaaggcaag acgcgggagg tccacggagg agctgatatt 360 tggatctgaa gctgtggata ggaggcaccc tatccctaat actttggaac ctacagctcc 420 ggtgcatccc ggaccgttcg ttccaggtca gggataagca gtaagccatg tcgacgtcca 480 agaggaagcg tgccgatgag gcgcaatgga ataagcggtc caccaagaag aaaggttctg 540 cgccgcaggc gaagaagcct gggggtaagg ttgagaagcc ttccctccag atacagactt 600 tactccactc aggtgacacg atgatcaccg taccttcagg tggggtctgt gacctcatca 660 atacatatgc ccgagggtcc gatgagggca accgtcacac cagcgaaacc ctaacgtaca 720 aagttggggt cgattaccac ttcgttgctg acgccgcatc ctgcaagtac tccaaccgcg 780 gaacaggtgt gatgtggctg gtgtacgaca cgactcccgg cggaaacgca cccaccaccc 840 aagatatttt cgcatacccc tccgcactca aggcctggcc gactacttgg aaagttagtc 900 gggagttgtg tcatcgcttc gtggtgaagc ggcgatggct cttcacaatg gagactgacg 960 gtcggatagg ctcggataca ccaccgagca accagagttg gccgccatgt aagcggaacg 1020 ttgacttcca caagttcact agtgggttgg gagtgaggac gcagtggaag aacgtcacag 1080 acggtggagt tggtgcgata cagagaggtg ctctgtatct agtcattgcc cccggcaatg 1140 gtattacgtt tactgcccat gggcagacac gtctgtactt taagagtgtt ggcaaccagt 1200 gatgaataaa actgcgtttt attatatctg atgaatgctg aaagcttaca ttgatatgtc 1260 gtgggatgac acgaaaaaca cacaaacaat acagggcggt caggacaaag caggcggcgt 1320 atgggcgcgc ccggggcaac atcttaaaaa aaaaccgata atagaattaa acttcctccg 1380 taggaggaag ctcaggggga gaataccatt tctcccccgg ctgcattaca tatatcatgc 1440 agtttgcttc gaaatactcc agctgccctg gagtcatttc cttcatccaa tcttcatccg 1500 agttggcgag aatgatagta ggtttagact tcatctgaac cttcttcttc ttcccgtatt 1560 taggatttac aacgaattct ttttgacagc caaccaactg tttccagcaa ggacaatatt 1620 taaaggggat atcatctacg atgttgtaga ttgtgtcttc gttgtaggaa gaccaatcaa 1680 cattattttg ccagtaatta tgacgcccta agcttctggc ccatgtagat tttcctgtcc 1740 ttgttggacc gacgatgtag aggctgcgct tccttgttcc ataatctgct tgctggttaa 1800 atcatccagc cattcgagat cagaaatagc gtcgtcgatg gaataacagt tgggttgaag 1860 aagcaggtac gcttgtggac tgacctggta tatgttaggt tgcaaccaat ctttgattga 1920 ttcgttgcat agcaggtctg gttcagaggt aggatgggga ttgatgaact cttcctgaat 1980 atcaggaaat agtttgttgg ccgagtactc gaagtactga agtttagtgg accaatcata 2040 agggagggat ttctgaacca tggagaggta ctcctgcttg gaagtagcat gagaaataat 2100 gtctcgcatt atttcatctt tggatggttt cttatccgaa tttccctttg aggagtttcc 2160 taggaatgat ttcttcctag gaatgaatgt acctctctca aacaaggcca ggggttcctt 2220 ggtgatgtaa tctcgtacct tgttggggct gattgcactc tgaatgttgg ggtggaaacc 2280 atcaatgtcg aagaaccttg agtcggtagt cctaactggt ttctccgtct gtattaatgc 2340 atgtaaacat tgatttccat ctctatgcgc ctcccgggcg catatgatgt acagaggagt 2400 ccaatgacta cagagatccc agatcctctg actgatgatt tctggctgtt cgggacactg 2460 aggatatgtc aggaaggtgt taggagatct atgtgagaac ggacggttgg atgaggagga 2520 ggtcatatcc gacgacggag gctgccgcta gcgaaggcag ggatgggagc tctaacaaac 2580 tctcctacag ctcgccaagt ttgttgccgc cgcggagaga gaaactccat cggcttatat 2640 agttgttcta atgggccgga ccgggccggc ccagcaggta aagggggcga gcaataatat 2700 t 2701 //