ID AF007415; SV 2; linear; genomic RNA; STD; VRL; 7351 BP. XX AC AF007415; XX DT 14-JUL-1997 (Rel. 52, Created) DT 08-JAN-2003 (Rel. 74, Last updated, Version 3) XX DE Grapevine virus A isolate PA3, complete genome. XX KW . XX OS Grapevine virus A OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Trivirinae; Vitivirus. XX RN [1] RP 1-7351 RX PUBMED; 18945038. RA Rubinson E., Galiakparov N., Radian S., Sela I., Tanne E., Gafny R.; RT "Serological detection of grapevine virus a using antiserum to a RT nonstructural protein, the putative movement protein"; RL Phytopathology 87(10):1041-1045(1997). XX RN [2] RP 1-7351 RX DOI; 10.1016/S0042-6822(02)00019-3. RX PUBMED; 12620796. RA Galiakparov N., Tanne E., Sela I., Gafny R.; RT "Functional analysis of the grapevine virus A genome"; RL Virology 306(1):42-50(2003). XX RN [3] RP 1-7351 RA Gafny R.; RT ; RL Submitted (08-JUN-1997) to the INSDC. RL Virology, Agricultural Research Organization, P.O. Box 6, Bet Dagan 50250, RL Israel XX RN [4] RC Sequence update by submitter RP 1-7351 RA Galiakparov N., Mawassi M., Tanne E., Sela I., Gafny R.; RT ; RL Submitted (06-JAN-2003) to the INSDC. RL Virology, Plant Protection, Volcani Center, Bet-Dagan 50250, Israel XX DR MD5; 6b22c59b130feeeed52ae5317613de2d. XX CC On Jan 6, 2003 this sequence version replaced gi:2253418. XX FH Key Location/Qualifiers FH FT source 1..7351 FT /organism="Grapevine virus A" FT /isolate="PA3" FT /mol_type="genomic RNA" FT /db_xref="taxon:35288" FT CDS 87..5210 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:Q8B3K7" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR005123" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR027450" FT /db_xref="InterPro:IPR037151" FT /db_xref="UniProtKB/TrEMBL:Q8B3K7" FT /protein_id="AAO17778.1" FT /translation="MSISVSSQRVAVSNLYTNGSEESVKAIKELKSKRLLETETRLDGL FT FDYYIPDTLREILSGYGMEFSVHSFQGHAHPVSKMIENHMLYRVAPNYFSNNTLVVSCK FT EGKIKRLRLKNAGNRNLNFTQYNRLVHAKDHHRYENAFRELDVGNLTNLINKESQSECI FT FIHDEVQYWSLDEMQRFLGSLSKVDRIVYSIIYPAEVEAGYSQSLFPEAYTFDLKEGRL FT IWYPDGKAEGAYTQPINPWLLRCSKTEDSKGRSWTITKLQTVGAHHLFSAIRGSYLTEE FT SYKYDNFTIINPNDILRGRRGSKPLYLRARMIKPTLLYLLALKKSDSNSAVAKLRMLSS FT REENMDEALFVAQLAKQIRDTALYDKMGNPSLRSILSESFYDVAGNLFTRLFNRPEYDA FT RCLEKFIRACETTEIHIGRRFMEGVLRGSSYQVQKVVDWVEDEEANALSEVNLVELTRN FT EREPQPYGSEQLQGSGARVRFPLSRLMRAHEMVHEAQFEVNFNHIRIVCSSKALVHLRQ FT YLIRLGRFKFMEGRAIEDIQDIQEGLELGLITEEEAESRLLPPDNIAPSEEAQEEVQQS FT GPIEEVSEKFMGARKLVKENIYSEKLHNREVAFYSRYSKQYSYKGGSHHSLGWDKALDE FT LIQELGLDESYDHCLIQRYSEGGSINFHADDEPCYLPGGTVVTVNLNGEAIFELKENTS FT GKTESKRLKDGDVFTMGAGMQQTHKHKVTSLTNGRCSITLRNKTVDYEARTEAINSDYE FT EDVAALDEGIEYLQKNQGNMCSLKAFAEHMQLSIPSVISIVNGASPQTLREIEGGGISV FT ATLVNLSRALDFPIAIHGERGYAETPGTYRRLHLKITTGHVEPFDGVISKGGLKEALLL FT SDGVGIGLFRVDKNKADRLAQSFYNGNTGVLLGKYNKGKMHSEGIDEPKEVLTAFGFAG FT SGKSHWCQTILKHCSVEKALVISPRKVLKDDWTSKISKRHKVVTFEVAFMDDYGCKDVV FT IDEIGLLPPGYIDLVIAVHRPRTLVLLGDPLQSTYHSKRDNVVLEASQEDIFARIKGQL FT PYLCYSHRLPKNCRLFELECMGAESEKRVTYRSSRLKDEPVICATRAMKEEKGSGWYTV FT SETQGLSFKSCLIHLDEHWAKKEDEDVMVALTRSRGEIGINVTNALKKTLIASAKSTLL FT RKVLKGETYRRSEIVAMARKHIPEVTVLFEESRLAENVDYEARLAGDPYLKSLLSLYDE FT IEMDEVEIEEPVALEPVKTHLALSEKMNELAPFELKAKEYREQYTDAGRTEQIDEEGYS FT GEEANPMTHKALYLKHTSDDTATFMMSVRKRLRFRNYEANRRKSKACNGIGKQMFSVFK FT ETYQLKEIDSLPDLERCEMEFMKKRVEKSAGLIEQHAGRSDPDWPSNYLKIFLKQQTCT FT KMEKRGVDAKAGQTIACFAHSVLCRFGPILRQTERALRELLPENVMIYSQKNYMDLDKW FT AKTWVESMMGTDSDYEAFDRSQDEKVLDLEVEVLRFFLWPEDLIREYEELKLMMGCALG FT DLAVMRFSGEFGTFFFNTICNMVFSCMRYHMDRNTPICFAGDDMYSPGILRTKNDYEGT FT LDQLTLKAKVHISEEPLFCGWRMSPFGIVKEPNLILDRWKIAKRSGNLSLCLVNYAIEA FT SFGYRLSEYLYDVNIDVDAQQELIREIVEKKHLLPKKIADLFSEDECEAHSDGDEDFLS FT NDIAKLYRVG" FT CDS 5179..5712 FT /codon_start=1 FT /product="unknown" FT /db_xref="UniProtKB/TrEMBL:Q8B3K6" FT /protein_id="AAO17779.1" FT /translation="MTSQSCTELVEFLSQGGDRCSLDRTSLESLSYTQCLYLLSDLRGL FT GYHSIDSILHILECSEAERFEIYRIFRRHGIGIGEALQLGVRKSLCYSPRSTAEILDDL FT LSRISRGGAFLPSDLGAVKGELLVTFQPSRLSVDLYANTKKVCTRTCQGKGDAGYVARR FT FSGYKGLALRSQGN" FT CDS 5654..6490 FT /codon_start=1 FT /product="movement protein" FT /note="ORF3" FT /db_xref="UniProtKB/TrEMBL:O39860" FT /protein_id="AAB62938.2" FT /translation="MSHGDSQATKGSLSDPKEIKIFNVKRNTKDLETLNKSLHRGDVYD FT TELIERVFPRRTKKCVVHKELVVQDGRVDCELDLMDGGLDDIDETEYPLYHVGCIVIAL FT MPHGKNLQGKVVVEVIDTRLKVGSGRISRSVMDMSKPLSACADFPGYFISTSDLLNGYT FT LHLSITTTDLQFVDGVHPFSVQLMNIGRLCGDDMKTRYAVGEASKILHQNILNSQGDGE FT MIPRGVQVQKVPDTLVMPEVYETIKRLGLKTNGTLRQEGGDKGDHRGTGAGESHAN" FT CDS 6414..7010 FT /codon_start=1 FT /product="coat protein" FT /note="ORF4" FT /db_xref="GOA:O39861" FT /db_xref="InterPro:IPR008879" FT /db_xref="UniProtKB/TrEMBL:O39861" FT /protein_id="AAB62939.2" FT /translation="MAHYAKRVEIRAIIEELVLAKATPTEDASESGYDRNMYLNTLFGY FT IALVGTSKKAVHYGEVDIVGPKASKKTGIDPRGKMVVSELVGRMRTLSVAVSEGPVKGA FT TLRQMCEPFAQNAYDFLVLMAEMGTYSQLATKMTRSGFKEPQVMFDFASGLDLKALTLQ FT EATVIQAMHSRLFRTEGAKGVFNAQSSVGEQAVEI" FT CDS 7011..7283 FT /codon_start=1 FT /product="nucleic acid binding protein" FT /db_xref="InterPro:IPR008891" FT /db_xref="UniProtKB/TrEMBL:Q8B3K5" FT /protein_id="AAO17780.1" FT /translation="MDDPSFLAGRSTFAKRRRARRMNVCKCGAIMHNNEDCKSSSISGH FT KLDRLRFVKEGRVTLTGETPVYRTWIRWVETEYHIYILETSDDEK" XX SQ Sequence 7351 BP; 2171 A; 1554 C; 2026 G; 1600 T; 0 other; gaatatttaa cttgattccc attgattata agtgaacata cgttaccagc acccacgctc 60 tgcaaagtac ctgtattttc accgccatgt caatatcagt atcctcccaa cgtgtagcag 120 tttccaacct ctacactaac ggatctgaag aatcagttaa agccataaag gagttaaaga 180 gcaaacggtt attggaaacc gaaaccaggt tagatgggct ttttgattac tacatcccag 240 acaccttgag agaaatactc tctggttatg gtatggagtt ctcagtccac tctttccagg 300 ggcacgctca ccccgtaagt aaaatgattg agaatcatat gctgtataga gtagcgccga 360 actatttttc taacaatacc cttgtagtta gctgtaaaga aggaaaaatc aagcgcctaa 420 gattaaagaa cgcaggtaat aggaatttga acttcacaca atacaataga ttggtacacg 480 ccaaggatca tcacagatac gagaatgcgt tcagagagct agacgttggc aatctgacaa 540 atctcataaa caaggaatcc caaagcgagt gcatcttcat tcatgacgaa gttcaatatt 600 ggagcctaga cgaaatgcag agattcttag gtagcttgtc taaggtagat agaatagtgt 660 acagcatcat atacccagcg gaggtagaag cggggtattc acagagcctg ttccccgagg 720 catatacttt tgatttaaaa gaggggaggc tcatatggta ccctgatggt aaggccgagg 780 gcgcctacac tcagccaatc aacccttggc tattaaggtg ctcaaaaacc gaggactcca 840 aaggcaggtc atggactata accaaattgc aaactgttgg ggctcaccac ctctttagtg 900 caataagggg aagttatctg acggaggaat catacaaata tgataacttc acgataatca 960 accccaatga tatcctgaga gggaggagag ggagcaagcc gctatacttg agagcccgta 1020 tgataaagcc cacactgcta tatctcctgg cactaaagaa gagtgactcg aactctgcgg 1080 tggccaagct gcgaatgctg agcagccgcg aagagaacat ggacgaggca ctattcgtgg 1140 ctcaactggc gaagcaaatc agggacacag cgctctatga caagatgggc aatccaagtc 1200 tgcggagcat actgtccgaa tcattctacg atgtggccgg aaatctgttc actagattgt 1260 tcaacaggcc agaatacgat gccaggtgct tggagaagtt catcagggcc tgcgaaacca 1320 cagagataca catcggcaga aggttcatgg agggggtgct acggggctcc agttatcagg 1380 ttcagaaagt agtagattgg gttgaggacg aagaggccaa cgcgctgagt gaggtcaatc 1440 ttgttgaact cacgagaaat gaaagagagc cacagccata cggatcagag caattgcaag 1500 ggtcaggtgc tagggtgagg ttccctttga gtcggctaat gagggcgcac gaaatggtgc 1560 atgaggctca gttcgaggtc aactttaatc acatcagaat agtgtgctcc tctaaagccc 1620 tggtgcactt aaggcaatac ctgatcagac tgggcaggtt caaattcatg gaaggcagag 1680 caatagagga catacaagac attcaagagg ggcttgaact gggcctgatc acagaagaag 1740 aggctgaatc acgcctgcta ccaccggaca acatcgcacc cagcgaagaa gcccaagaag 1800 aggtgcagca aagcggtccc attgaagagg tgagtgaaaa gttcatgggg gcacgcaaat 1860 tggttaagga gaacatttac tctgaaaaac tgcacaacag agaggtggcc ttctacagcc 1920 ggtacagcaa gcagtacagt tacaaagggg gctcacacca ctcactcgga tgggataaag 1980 ctttggatga gctcatacaa gagttgggcc tagatgagag ctatgaccac tgtctcattc 2040 aacggtactc tgagggtggc agtatcaatt tccacgccga tgatgagccc tgctatctac 2100 caggaggaac cgtggtgacg gtgaatttga atggggaagc aatctttgag ttgaaggaga 2160 acacatcagg caaaaccgag tcaaaaagat taaaggatgg tgatgtgttc acaatgggcg 2220 caggaatgca gcaaacccat aaacacaagg tcacctcact cactaacggg cgatgtagta 2280 tcactctgag gaacaagaca gtggactacg aggcaaggac ggaggcaatc aattccgatt 2340 acgaggagga tgtagcagca ctggacgagg gaattgagta cctccaaaag aatcaaggga 2400 atatgtgctc cctgaaggct tttgctgaac acatgcaatt gagcatacca agcgtgatct 2460 caatagtaaa tggcgcatcg ccacaaacac tgagagaaat agaaggtggt gggatcagtg 2520 tcgcgacgct tgtgaatctc tcgagggcgc tggacttccc gatcgccatt cacggagaga 2580 gaggatatgc tgaaacgcct ggaacatata gaagactgca cctcaagatc acaacagggc 2640 acgtggaacc attcgatgga gtcataagta agggcggtct taaggaggcc ctgttgctga 2700 gcgatggcgt tggaataggt ctattcagag tggacaaaaa taaggctgac cgccttgccc 2760 aaagtttcta caacgggaac acaggggtgc ttctgggaaa gtacaataaa ggcaagatgc 2820 actcagaggg catagatgaa ccaaaggagg tgctcaccgc tttcggattt gcaggttcag 2880 ggaaaagtca ctggtgtcaa accatactta aacactgttc cgtagagaaa gccctcgtta 2940 tcagcccacg gaaggtactc aaagacgact ggacctcaaa gatctcaaag aggcacaaag 3000 tggtgacatt cgaggtggct ttcatggatg attatggctg caaggatgtg gttatcgacg 3060 agatcgggtt gctacctcct gggtacatcg atttagtcat tgctgtgcat agaccacgta 3120 cactggtgct cctgggggat ccactgcaaa gcacctacca cagcaagcgt gacaacgtag 3180 tcttggaggc cagtcaagag gacatctttg ccaggatcaa agggcagcta ccatacctct 3240 gctactccca ccggctccca aagaattgca gattattcga gctagagtgc atgggagcgg 3300 agagcgaaaa gagggtaacc tatcgctcga gtcgcctcaa ggacgagccg gtcatctgcg 3360 cgaccagggc catgaaggag gaaaaagggt caggctggta cacagtgagc gagacccaag 3420 ggctaagctt caaatcgtgt ctcattcacc ttgatgagca ttgggcgaag aaagaggatg 3480 aggatgtgat ggtggccctg acaagatcaa gaggggaaat aggcataaac gtcaccaatg 3540 cactcaagaa gacgttgatc gcgagcgcaa aaagtacgct gctcaggaag gtactcaagg 3600 gggagacata taggcgttct gaaatcgttg ccatggcccg caagcatata ccagaagtca 3660 ccgttctctt cgaggagagt aggctagcag aaaatgtgga ttatgaagct aggttagctg 3720 gtgatccata cttgaagtca ctgctctcac tctatgatga gattgaaatg gacgaggtgg 3780 aaattgaaga accggtcgct ctggaaccgg ttaaaaccca tctcgcattg agtgagaaga 3840 tgaacgaact ggcccctttc gaattgaagg ccaaagagta cagagagcag tacacggatg 3900 ctggaaggac tgagcagata gacgaggagg ggtatagcgg ggaagaggcc aatccgatga 3960 cccacaaggc tttgtaccta aaacacacct ctgatgacac tgccacgttt atgatgtctg 4020 taaggaagcg attgcgcttc agaaactatg aggcaaacag aaggaagtcc aaggcatgta 4080 atggcatcgg aaagcagatg ttctcggtct tcaaggagac ataccagttg aaggagatcg 4140 attccttacc cgatctggag aggtgcgaaa tggaattcat gaagaaacgc gtggagaaga 4200 gcgcgggtct aatagagcag catgccgggc gtagtgaccc agactggcca agcaactacc 4260 tgaagatctt tctgaaacag cagacctgta caaaaatgga gaaacgcggc gtggacgcaa 4320 aggcgggtca aaccatagcc tgcttcgccc actccgtgct ttgtagattc ggccctatac 4380 tcagacagac agaaagggca ctcagggaat tgttaccgga gaatgtaatg atatactctc 4440 agaagaacta catggacctg gacaaatggg ccaagacctg ggtcgagagc atgatgggga 4500 cggattccga ttatgaggcc tttgatcgat ctcaagatga gaaagtgcta gatctagagg 4560 tagaagtgct tcgcttcttc ctatggccgg aggatttaat cagggagtac gaggagctta 4620 aactgatgat ggggtgcgca ctgggtgatc tagccgtcat gcggttttcg ggcgagttcg 4680 ggacattctt cttcaacacc atatgcaaca tggtatttag ctgcatgcgc tatcatatgg 4740 atcgcaacac cccaatatgt ttcgctgggg atgacatgta ttcacctggg atcctgagga 4800 caaagaatga ttatgagggg actctagacc aactgactct gaaagcgaaa gtgcatatat 4860 ctgaagagcc attgttctgt ggttggagga tgagcccctt cgggatagtg aaggagccca 4920 atctaatcct ggatcgctgg aagatcgcga aaagaagtgg aaatctgtca ctctgtctcg 4980 tcaactacgc gattgaggct agttttgggt acaggttaag cgagtacctg tatgatgtta 5040 atatagacgt cgatgctcag caagaactga taagggagat tgtggaaaag aagcacctac 5100 tgccgaaaaa gatagcagat cttttcagtg aggacgagtg cgaggcgcac agcgatggcg 5160 acgaggactt tttgagtaat gacatcgcaa agttgtacag agttggttga gttcttgagt 5220 cagggtggtg ataggtgcag tttagataga acgtcacttg agtccttgtc gtatacacag 5280 tgtctgtact tattgtctga tcttagaggc ctaggatatc acagtataga tagcatatta 5340 catatactgg agtgtagcga ggcggaacgt ttcgaaatct atcgaatctt ccggaggcac 5400 ggaatcggga ttggagaggc tttgcagcta ggcgtgagaa aaagtttgtg ttacagtccg 5460 agaagcaccg cagagatact ggacgacctc ctgtccagga taagcagggg aggtgccttc 5520 ctaccaagtg atctgggtgc agtgaaagga gaacttctgg ttacattcca accgtccaga 5580 ttaagtgtag acctctacgc taataccaag aaggtgtgta ccaggacgtg tcaaggcaaa 5640 ggcgacgcag gttatgtcgc acggagattc tcaggctaca aagggctcgc tctcagatcc 5700 caaggaaatt aagatattca atgtcaagag aaacacaaag gatctcgaga cactgaacaa 5760 gagcctccac aggggagatg tgtacgacac ggagctaata gagcgtgtgt ttccaagacg 5820 cacaaagaaa tgcgtcgtgc acaaggagct agtcgttcaa gatggccgag tggattgcga 5880 gctggatctg atggacgggg gtttggatga tatagatgag acagaatacc cgctctacca 5940 cgtggggtgt atcgtcatcg ctttaatgcc acatggtaag aatctccagg gcaaggtggt 6000 tgtcgaggtg atagataccc ggctcaaggt tgggtcaggg cggatctcta ggagcgtgat 6060 ggatatgtcg aaacccttaa gcgcatgtgc cgacttcccg gggtacttca ttagtacttc 6120 cgatctgttg aacggataca cgctgcacct ctccataacc acaactgatc tgcagtttgt 6180 ggacggcgtg cacccattca gcgtacaact catgaatatc gggcgtctct gcggggatga 6240 catgaagaca aggtatgcgg taggagaggc ctcgaagatc ctgcatcaga acatcctaaa 6300 ctcacaaggc gatggcgaga tgataccgcg tggtgtgcaa gtgcaaaaag taccagatac 6360 cctagttatg ccagaagttt atgagacaat aaagagactt gggttgaaga caaatggcac 6420 actacgccaa gagggtggag ataagggcga tcatagagga actggtgctg gcgaaagcca 6480 cgccaactga ggacgcatcc gaaagtggct acgaccgaaa tatgtacctg aatactctct 6540 tcgggtacat cgccttggtc gggacaagca agaaggcggt tcattatggg gaggtagata 6600 tagtaggacc taaagctagc aagaaaacgg ggatcgaccc tcgcggaaag atggttgtat 6660 cggagctggt cggcagaatg cgcactctga gcgtggcggt tagtgaggga cctgtaaaag 6720 gtgcaacctt gaggcagatg tgtgagcctt tcgcacagaa cgcctatgac ttcctcgtgc 6780 ttatggcgga gatgggcacc tattcacagc tagccacaaa gatgacgagg tcaggcttta 6840 aggaaccaca ggttatgttc gactttgcgt cgggcttaga tttgaaagca ctgaccctac 6900 aagaagccac tgtgatacag gctatgcact cacgtctctt tcggacagaa ggtgcaaagg 6960 gggtattcaa cgctcaatca tctgtcggtg agcaggctgt cgagatatag atggatgacc 7020 catcgtttct cgcgggtagg tccacgtttg ctaaacgtag gcgcgctagg cgcatgaatg 7080 tgtgtaagtg tggtgctata atgcacaata atgaggactg caagtccagt agtatttccg 7140 gtcataaact cgatagattg cggttcgtca aagagggaag agtaactcta acgggtgaga 7200 ctcctgttta ccggacttgg atcagatggg ttgagactga atatcacata tatatattag 7260 aaacctcaga cgatgagaaa tgatcgtcta tcctagctaa taagtgaata acaacataat 7320 ggtaatgcga gctaggttgt catactatga c 7351 //