ID AF004519; SV 1; linear; genomic RNA; STD; VRL; 7219 BP. XX AC AF004519; XX DT 06-JAN-1999 (Rel. 58, Created) DT 11-JAN-1999 (Rel. 58, Last updated, Version 2) XX DE Lymphocytic choriomeningitis virus Z protein and L protein genes, complete DE cds. XX KW . XX OS Mammarenavirus choriomeningitidis OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Arenaviridae; Mammarenavirus. XX RN [1] RP 1-7219 RX DOI; 10.1023/A:1008016724243. RX PUBMED; 9857988. RA Djavani M., Lukashevich I.S., Salvato M.S.; RT "Sequence comparison of the large genomic RNA segments of two strains of RT lymphocytic choriomeningitis virus differing in pathogenic potential for RT guinea pigs"; RL Virus Genes 17(2):151-155(1998). XX RN [2] RP 1-7219 RA Djavani M., Lukashevich I.S., Salvato M.S.; RT ; RL Submitted (16-MAY-1997) to the INSDC. RL Pathology and Laboratory Medicine, university of Wisconsin, 1300 University RL Ave., Madison, WI 53706, USA XX DR MD5; d424b373cfe3fe50b96f631a8da76ef1. DR EuropePMC; PMC1891391; 17371814. DR EuropePMC; PMC2323605; 17624390. DR EuropePMC; PMC2536762; 9857988. DR EuropePMC; PMC2680969; 19478873. DR EuropePMC; PMC2738461; 17553250. DR EuropePMC; PMC2795640; 19041349. DR EuropePMC; PMC3364700; 22776051. XX FH Key Location/Qualifiers FH FT source 1..7219 FT /organism="Mammarenavirus choriomeningitidis" FT /strain="WE" FT /mol_type="genomic RNA" FT /db_xref="taxon:3052303" FT CDS 89..361 FT /codon_start=1 FT /product="Z protein" FT /note="ring-finger protein" FT /db_xref="GOA:Q9YZ26" FT /db_xref="InterPro:IPR003224" FT /db_xref="InterPro:IPR024183" FT /db_xref="InterPro:IPR038485" FT /db_xref="UniProtKB/TrEMBL:Q9YZ26" FT /protein_id="AAD03395.1" FT /translation="MGQGKSKEERDTSNTGRAELLPDTTYLGPLNCKSCWQKFDSLVRC FT HDHYLCRHCLNLLLSVSDRCPLCKYPLPTKLKVSTVPSSLPPYEE" FT CDS complement(558..7187) FT /codon_start=1 FT /product="L protein" FT /note="L polymerase" FT /db_xref="GOA:Q9YZ25" FT /db_xref="InterPro:IPR007099" FT /db_xref="InterPro:IPR010453" FT /db_xref="InterPro:IPR026382" FT /db_xref="UniProtKB/TrEMBL:Q9YZ25" FT /protein_id="AAD03396.1" FT /translation="MDETIADLRELCLNYIEQDERLSRQKLNFLGQREPRMVLIEGLKL FT LSRCIEIDSADKSGCIHNHDDKSVETILIDSGIVCPGLPLIIPDGYKLIDNSLILLECF FT VRSTPASFEKKFIEDTNKLACIKEDLAVAGITLVPIVDGRCDYDNSFMPEWVNFKFRDL FT LFKLLEYSSQDEKVFEESEYFRLCESLKTTVDKRSGMDSMKILKDARSFHNDEIMKMCH FT DGVNPNMSCDDVVFGINSFFGRFRRDLLNGKLTRNFQKVSPEGLIKEFSELYETLTDND FT DILMLSREAVESCPLMRFITAETHGHERGSDANTEYERLLSMLNKVKSLKLLNTRRRQL FT LNLDVLCLSSLIKQSISKGLENDKHWVGCCYSSVNDRLVSLQSTKEEFIRLLKNRRKSR FT VHKKASLDELFRVSINEFIAKIQKCLSAVGLSFEHYGLSESLVQECHIPFAEFENFVRA FT GAHPVMHYTKFEDYTFQPNIEQLRGLQSLRKLSSVCLALTNSMKTSSVARLRQNQLGSV FT RYQVVECKEVFCQTIKLDSEEYHLLYQKTGESSRCYSIQGPDGHLISFYADPKRFFLPI FT FSDAALHNMIDTMISWIRSCPDLKDSLIDIETALRTLILLMLTNPTKRNQKQVQNIRYL FT VMAIVSDFSSTSLMDKLKEDLITPAEKVVYRLLRFLIRTIFGTGEKVLLSAKFKFMLNV FT SYLCHLITKETPDRLTDQIKCFEKFFEPKSELGFFVNPKRTITPEEECVFYEQMRKFTG FT KDIDCQHSTPGVNLEIFSMMVSSFNNGTLILKGEKRLNNLDPMTNSGCATALDLASNKS FT VVVNKHLNGERLLEYDFNKLLVSAVSQITEGFMRKQKYKLRHSDYEYKVSKLVSRLVIG FT SRKTEADKLEDDPVDVCFDGEEETSFFRSLEDKVNSTITRYNRGTRLNDRQGGGEFKNT FT KGLHHLQIVLSGQRAYLRKVILSEISFHLVEDFDPSSLTNDDMRFICEAVEGSTELSPL FT YFTSAVKEQCGLDEMARNLCRKFFSEGDWFSCMKMILLQMNANAYSGKNRHMQRQSLNF FT KFDWDKLEEDVRISERESNSESLSKALSLTKCMSAALKNLCFYSEESPTSYTSVGPDSG FT RLKFALSYKEQVGGNRELYIGDLRTKMFTRLVEDYFESFSSFFSGSCLNNDKEFENAIL FT SMTINVREGLLNYSMDHSKWGPMMCPFLFLMLLQNLKLGDDQYVRSGKDHVSTLLTWHM FT HKLVEVPFPVVNAMMKSYVKSKLKLLKGSGTTVTERIFREYFEMGVVPSHISSLIDMGQ FT GILHNASDFYGLISERFINYCIGVIFGERPEAYTSSDDQITLFDKRLSDLVDSDPEEVL FT VLLEFHSHLSGLLNKFISPKSVVGRFAAEFKSRFYEWGEEVPLLTKFVSAALHNVKCKE FT PHQLCETIDTMADQAIANGVPVFFVNCIQRRTLDLLKYANFPLDPFLLNTHTDVKDWLD FT GSRGYRIQRLIEELCPSETKIMRKLVRRLHHKLKNCECNEEFFLDLFNREKNEAILQFG FT EILGLEDDLNELASINWLNLNEMFPLRMVLRQKVVYPSVMTFQEEKIPSLIKTLQNKLC FT SKFTRGAQKLLSEAINKSAFQSCVSSGFIGLCKTLGSRCVRNKNRENMYIRKVLEDLTM FT DEHVTRVHKQDGVMLYICDKQRHPEAHRDHINLLRPLLWDYICISLSNSFELGVWVLAE FT PVKGKNERNLAVRHLNPCDYVARKPESSRLLEDKVSLNHVIQSVRRLYPKIFEDQFLPF FT MSDVSSKNMRWSPRIKFLDLCVLIDINSESLSLISHVVKWKRDEHYTVLFSDLVNSHQR FT SDSSLVDEFVVSTRDVCKNFLKQVYFESFVREFVATARTLGNFSWFPHKDMMPSEDGAE FT DLGPFQSFILKVVNKNIERPMFRNDLQFGFGWFSYRVGDVVCNAAMLIKQGLTDPKAFK FT SLRDLWDYMLSSTGGILEFSITVDFTHNQNNTDCLKKFSLIFVVKCQLQSPGVADYLSC FT SHFFKGEVDRRLLDECLNLLRTDSIFKANDGVFDIRSEEFEDYMEDPLTLGDSLELELI FT GSRRILNEIKSTDFERIGPEWEPVPLTIRMGALFEGRNFVQNISVKLETKDMRVFLAGL FT EGYGKISDVLRRLFLHRFRIGEHLLGSEISVILQELCMDRSVMLTPLSFVPDWFTFRDC FT RLCFSRSKNTVMYETTGGKFRLKGKSCDDWLGGSVAKEID" XX SQ Sequence 7219 BP; 2047 A; 1738 C; 1298 G; 2136 T; 0 other; cgcaccgggg atcctaggcg tttagttgcg ctgctttatt gcacagcttc actctgctaa 60 actatcagga actgaccgat catcagccat gggccaaggc aagtccaaag aagaaaggga 120 caccagcaat acaggcagag cagagctttt gccagacacc acctatcttg gtcctctaaa 180 ttgtaaatca tgttggcaga aatttgacag cttggttaga tgccatgacc actatctttg 240 cagacactgt ctgaatctcc tgctgtcagt ttccgacaga tgtcctctct gtaagtatcc 300 actgccaacc aaactgaagg tgtcaacagt cccaagctcc ctacctccct atgaggagta 360 acacgcccca gacctcgaca cagcaggcca cccaacgcag aaaaaccaca cacaagccgg 420 cacacacaga cacagcaacc agcacaaagc gcagaacacg cacacacaca cacacatact 480 cttaccgccc ccaccacgat tccccccccc ggggagcgac cccccgggag cccgggaggg 540 ccccgcggag atgccggcta gtcgatctcc ttggccaccg acccgcctag ccaatcgtca 600 caggatttcc ccttgagtct aaacttgccc ccagttgtct catacattac agtgttcttt 660 gacctgctga agcagagcct acaatctctg aaggtgaacc aatctggcac aaaagacaat 720 ggtgtcagca tgacggatct gtccatgcag agctcctgga ggattacact tatctctgag 780 cccagcaagt gttcgccgat tctgaatcga tgcaggaaga gtcttctgag gacatcacta 840 atttttccat agccctcgag ccctgccaga aagaccctca tgtcctttgt ctctaatttc 900 acagagatat tctgaacaaa gtttctccct tcaaagaggg cacccatcct tatggtcaga 960 ggcacaggct cccactcagg cccaatcctc tcaaagtcag tagatttgat ctcattcaga 1020 atccttctag aacctatcag ttcaagttct agtgaatcac caagtgtcaa agggtcttcc 1080 atgtaatctt caaactcttc agacctaatg tcaaagactc catcattcgc tttaaagata 1140 gagtctgtcc tcaacagatt gagacactca tctaataatc tcctgtcaac ctcacctttg 1200 aagaaatgag agcatgataa gtaatcagct acacctggac tctgtaattg gcatttaacc 1260 acaaagatca atgaaaattt cttcaagcag tcagtgttgt tctggttgtg tgtgaaatcc 1320 actgtgattg agaactccaa tatcccgcct gtgctgctga gcatgtaatc ccacagatct 1380 cttaaagatt taaatgcttt tggatctgtc aaaccctgct taattaacat agcggcatta 1440 cacacaacat cccccacacg gtaagagaac catccaaaac caaactgcaa gtcattccta 1500 aacatgggcc tctctatatt tttgttcacc actttcaaaa tgaatgattg gaaggggccc 1560 aggtcttcag caccatcttc agatggcatc atgtccttat gggggaacca tgaaaagtta 1620 cctaaggtcc tagctgttgc aacaaactct cgtacaaatg attcgaaata cacttgcttc 1680 aaaaagttct tgcagacatc ccttgtgcta acaacaaatt catcaactaa acttgagtct 1740 gaccgctggt gagagttgac gagatcagaa aacagcacag tgtaatgttc gtcccttttc 1800 cacttgacaa catgagaaat gagtgacaaa gactctgagt tgatgtcaat caggacacag 1860 aggtcaagga atttaatcct gggactccat ctcatatttt ttgagctcac atcagacatg 1920 aatgggagaa actgatcctc aaagattttg gggtacagtc gcctcacaga ttgaattaca 1980 tgattcaaac tcactttatc ctctagtagt ctcgaactct caggctttct tgctacataa 2040 tcacatggat ttaagtgcct aacagccaaa tttctctcgt tctttccttt cacaggttct 2100 gctaaaaccc aaactcccag ctcaaaagag ttgctcaatg agatgcaaat gtagtcccag 2160 agaaggggcc tcaaaaggtt gatgtggtca cggtgagcct ctgggtgtct ctgcttgtcg 2220 caaatgtaca acatcacacc atcttgtttg tgaacccttg tgacatgctc atccatggtt 2280 agatcttcaa gcacctttct gatatacata ttttccctgt ttttatttct cacacaccta 2340 cttcctaaag tcttacagag acctataaag ccggatgaga cacaactctg aaaagctgat 2400 ttgttgattg cctctgacag cagcttctgt gcacctcttg tgaacttact acaaagctta 2460 ttttggagtg ttttaatcaa tgaggggatc ttttcctctt gaaaggtcat tactgatggg 2520 taaaccactt tttgtctcag aaccatcctc aatgggaaca tttcattcag attcaaccaa 2580 ttgatgcttg ccaactcatt aagatcatcc tcaagaccaa gaatctctcc aaattgaagg 2640 atggcctcat tcttttccct gttgaagagg tctagaaaaa attcctcgtt acattcacag 2700 ttcttgagtt tgtgatgtag tcttcttaca agttttctca tgatctttgt ttcactggga 2760 cacaattctt caatgagtct ttggattcta taacctctag aaccatctaa ccaatccttt 2820 acatcagtgt gagtgtttaa caagaatgga tctaaaggga aattagcata tttcaagaga 2880 tccagtgtcc tccgctggat acagtttacg aaaaaaactg ggacgccatt tgctatagct 2940 tgatcagcca tcgtatctat tgtctcacaa agttgatgcg gctctttaca cttaacattg 3000 tgtagtgccg cagacacaaa tttcgtgagg agagggacct cctcccccca ctcataaaat 3060 ctggatttga attccgctgc aaaccgccca accacacttt ttggactgat gaacttgttc 3120 aacaaaccac tcaagtgaga gtggaattcc agcaagacaa ggacttcttc tgggtcacta 3180 tcaactaagt cactcaatct cttgtcaaat aaagtgatct gatcatcact tgatgtatag 3240 gcttctggtc tttctccaaa aatgacacca atacaataat tgataaacct ttcactaatt 3300 aaaccgtaaa aatcagaagc attgtgtagg atcccctgtc ccatgtcaat gagactagat 3360 atgtgggatg gcactacccc catttcaaaa tactctctaa agattctctc tgtaacagtc 3420 gttcctgacc ctttgagaag cttgagtttt gatttaacat atgatttcat cattgcattc 3480 acaacaggga aggggacttc aacaagttta tgcatatgcc aagtcaacaa ggtgctaaca 3540 tgatcttttc cagaacgcac gtactgatca tcacccagtt tgagattttg gagaagcatt 3600 aagaatagga atgggcacat catcggcccc catttgctgt gatccatgct gtagtttaac 3660 aacccttctc tcacattgat agtcattgac aagattgcat tttcaaactc tttgtcattg 3720 tttaaacaag atcctgaaaa gaaactagaa aaggattcaa aataatcttc taccaatctt 3780 gtgaacattt ttgtcctcaa atccccaatg taaagctctc tatttccccc aacctgctct 3840 ttgtatgaca atgcaaactt tagtctccca gagtcagggc caactgaagt gtatgatgtt 3900 ggtgattctt ctgagtaaaa acacagattc tttagagcag cactcatgca ttttgtcaat 3960 gaaagggcct tacttagaga ttcagaattg ctttcccttt cactgattct cacatcttct 4020 tccaatttgt cccagtcaaa tttaaaattt aagctctgcc tctgcatgtg tctgttcttc 4080 cctgaatacg catttgcatt catctgtaac aagatcatct tcatacatga gaaccaatca 4140 ccctctgaga agaactttct acagaggttt cttgccatct cgtccagacc acattgttct 4200 ttgacagctg atgtaaaata caatggtgac agttctgttg aaccttcaac agcctcacaa 4260 ataaatctca tgtcgtcatt ggtgagagag gatggatcaa agtcctctac tagatgaaat 4320 gaaatttctg ataaaatgac cttcctcaga taagctcttt gacctgacaa aacaatctga 4380 aggtggtgta gtccttttgt gttcttgaat tctccccccc cttgcctgtc attaagccta 4440 gtgcctctat tataccgtgt tattgtggag ttgaccttat cttctaaact cctaaaaaaa 4500 cttgtctcct cctccccatc gaaacacaca tctaccggat catcttccaa tttgtctgcc 4560 tctgttttcc tggaaccgat gactaatcta gagacaagct ttgagacctt atattcgtaa 4620 tctgagtgtc tcagcttata cttttgtttc ctcatgaagc cctctgtaat ttggctcaca 4680 gcactaacaa gcaatttgtt aaaatcatac tccaaaagcc gttctccatt cagatgttta 4740 ttgacaacca cacttttgtt gcttgcgaga tctaatgctg tcgcacatcc agagttggtc 4800 atggggtcca gattgttgag ccttttctct ccttttagga ttaaggtgcc attgttgaat 4860 gaagatacca tcatgctaaa gatctctaaa ttaacaccag gggttgaatg ctgacaatca 4920 atatctttac cggtgaactt cctcatttgt tcataaaaaa cacattcctc ttcgggtgtg 4980 attgttctct tagggttgac aaagaaacct aactcactct tgggctcaaa gaacttttca 5040 aaacatttta tctgatctgt caatctatca ggggtctcct ttgtgatcaa atgacacagg 5100 tatgacacat tcaacataaa cttaaatttt gcacttaata acaccttttc accagtacca 5160 aaaattgtcc taatcaaaaa ccgaagcagc ctgtacacca ccttctcggc aggtgtgatt 5220 agatcctcct tcaacttatc cattaatgag gtcgatgaaa agtctgagac gatggccatc 5280 actaaatacc taatattttg aacctgcttt tgatttctct ttgttgggtt ggtgagcatc 5340 agtaggatta atgtccttag tgcagtctca atgtcaataa gagaatcttt caagtcaggg 5400 catgaccgaa tccatgaaat cattgtgtct atcatgttgt gcaacgccgc atctgaaaaa 5460 attggtaaaa agaaccgttt tggatctgcg taaaaggaaa tcaagtgacc atccggacct 5520 tgtatggaat aacacctcga ggattctcca gttttctgat atagtagatg atactcttcg 5580 gaatccagtt ttattgtctg gcaaaacacc tctttgcact ccaccacttg atatctcaca 5640 gaccccagtt ggttctgtct caacctggca actgagcttg ttttcatgct gtttgttaga 5700 gccaaacaaa cagatgacag ttttctcaaa ctctgtaaac ccctcaattg ctctatgtta 5760 ggctggaaag tgtaatcttc aaattttgtg taatgcatta caggatgagc tccggctctc 5820 acaaagttct caaattcagc aaatggtata tggcattctt gcacgaggct ttctgatagt 5880 ccataatgct caaaactaag tcccactgct gataggcatt tctggatttt tgctatgaac 5940 tcatttatgg ataccctaaa aagctcatca agagatgctt ttttgtgcac tcttgacttt 6000 cttctgttct tcaaaagtct gatgaattct tctttggtac tttgaaggct cacaagccta 6060 tcattcacac tactgtagca acaaccaacc caatgtttat cattttccaa ccctttggaa 6120 attgactgct taataagtga agaaagacat aagacatcta agttcagcag ctgtctcctt 6180 ctagtgttta ataattttaa gcttttcacc ttgttcaaca tagagagtag cctttcatac 6240 tcagtgttag catcgcttcc cctctcatgc ccatgggtct ctgctgtaat gaacctcatt 6300 aaggggcagg attcaactgc ctccctgctc aacattaata tgtcatcatt atcagtaagg 6360 gtttcataaa gttcagagaa ttccttgatc aagccttcag ggcttacctt ttggaaattc 6420 cttgtgagtt tcccatttag caggtccctc ctaaacctgc caaaaaagga atttatgcca 6480 aagaccacat catcgcaact catgttgggg ttgacaccat cgtggcacat tttcataatc 6540 tcatcgttat gaaatgatct tgcgtctttc agaattttca ttgagtccat gccggaacgt 6600 ttgtcaacag tggtcttcag agactcacag agcctgaagt actcagactc ctcaaaaact 6660 ttctcatctt gactagaata ctccaaaagt ttaaatagga ggtctctaaa tttaaaattc 6720 acccattctg gcatgaaact gttatcataa tcacaacgac catccactat tggaaccagt 6780 gtgatgcctg caacagcaag atcttctttg atgcatgcta gtttgttggt gtcctcaatg 6840 aacttctttt caaaactagc tggtgtgctt ctaacaaaac attcaagaag aataagggaa 6900 ttgtcaatca acttataacc atcagggatg atgagtggca gtcctggaca cacaatccca 6960 gagtctatta ggattgtttc aacagatttg tcgtcgtggt tgtgtatgca accacttttg 7020 tctgcactgt ctatctctat acagcgtgat aacaatttga gtccctcaat taggaccatt 7080 ctgggttctc tttgtcccag gaagttgagt ttttgccttg acagcctctc gtcctgttct 7140 atgtagttta gacacaactc tctcagatct gcaatagttt catccattgc gcatcaaaaa 7200 gcctaggatc ctcggtgcg 7219 //