ID AF003952; SV 1; circular; genomic DNA; STD; VRL; 2690 BP. XX AC AF003952; XX DT 13-AUG-1997 (Rel. 52, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 4) XX DE Maize streak virus - A[Kom], complete genome. XX KW . XX OS Maize streak virus - A[Kom] OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2690 RX DOI; 10.1007/s007050170107. RX PUBMED; 11504417. RA Schnippenkoetter W.H., Martin D.P., Hughes F.L., Fyvie M., Willment J.A., RA James D., von Wechmar M.B., Rybicki E.P.; RT "The relative infectivities and genomic characterisation of three distinct RT mastreviruses from South Africa"; RL Arch. Virol. 146(6):1075-1088(2001). XX RN [2] RP 1-2690 RA James D., Hughes F.L., Schnippenkoetter W., Thomson J.A., Rybicki E.P.; RT "Complete nucleotide sequence of MSV-Komatipoort infectious clone"; RL Unpublished. XX RN [3] RP 1-2690 RA James D., Hughes F.L., Schnippenkoetter W., Thomson J.A., Rybicki E.P.; RT ; RL Submitted (14-MAY-1997) to the INSDC. RL Microbiology, University of Cape Town, PB Rondebosch, Western Cape 7701, RL South Africa XX DR MD5; 94ab4eecae42b4d0b197170fc8e51b35. DR EPD; EP26005; MSV_105_1. DR EPD; EP26006; MSV_09_2. DR EuropePMC; PMC1262190; 16244707. DR EuropePMC; PMC4148390; 25166274. XX FH Key Location/Qualifiers FH FT source 1..2690 FT /organism="Maize streak virus - A[Kom]" FT /isolate="Komatipoort" FT /mol_type="genomic DNA" FT /clone="pKom500" FT /note="infectious clone" FT /db_xref="taxon:268321" FT misc_feature join(2559..2690,1..133) FT /note="long intergenic region; LIR" FT CDS 150..455 FT /codon_start=1 FT /product="movement protein" FT /note="V1 ORF" FT /db_xref="GOA:O36261" FT /db_xref="InterPro:IPR002621" FT /db_xref="UniProtKB/TrEMBL:O36261" FT /protein_id="AAB65395.1" FT /translation="MDPQNALYYQPRVPTAAPTSGGVPWSRVGEVAILSFVALICFYLL FT YLWVLRDLILVLKARQGRSTEELIFGGQAVDRSNPIPNLPSPPSQGNPGPFVPGTG" FT CDS 466..1200 FT /codon_start=1 FT /product="coat protein" FT /note="V2 ORF" FT /db_xref="GOA:O36262" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:O36262" FT /protein_id="AAB65396.1" FT /translation="MSTSKRKRGDDSNWNKRVPKKKPSSAGLKRAGSKADRPSLQIQTL FT QHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAVDYHFVADAAACRYSNT FT GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET FT DGRIGSDIPPSNTSWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP FT GNGLTFTAHGQTRLYFKSVGNQ" FT misc_feature 1198..1371 FT /note="short intergenic region; SIR" FT gene complement(1369..1815) FT /gene="repB" FT CDS complement(1369..1815) FT /codon_start=1 FT /gene="repB" FT /product="replication associated protein B" FT /note="RepB" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:O36263" FT /protein_id="AAB65398.1" FT /translation="MDGFCIQSSDERSRKQSLYIVGPTRTGKSTWARSLGVHNYWQNNV FT DWSSYNEDAIYNIVDDIPFKFCPCWKQLVGCQRDFIVNPKYGKKKKVQKKSKPTIILAN FT SDEDWMKEMTPGQLEYFEANCVIYIMSPGEKWYSPPVLPPTEEV" FT gene complement(1710..2528) FT /gene="repA" FT CDS complement(1710..2528) FT /codon_start=1 FT /gene="repA" FT /product="replication associated protein A" FT /note="RepA; C1 ORF" FT /db_xref="GOA:O36264" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:O36264" FT /protein_id="AAB65397.1" FT /translation="MASSSSNRQFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPK FT YILCAREAHKDGSLHLHALLQPEKPIRISDSRFFDINGFHPNIQSAKSVNRVRDYILKE FT PLAVFERGTFIPRKSPFLGKSDSEVKEKKPSKDEIMRDIISHATSKEEYLSMIQKELPF FT DWSTKLQYFEYSANKLFPEIQEEFTNPHPPSSPDLLCNESINDWLQPNIFQVSPEAYML FT LQPTCYTLEDAISDLQWMDSVSSHQMKDQESRASTSSAQQEPENLLGPEA" XX SQ Sequence 2690 BP; 693 A; 632 C; 688 G; 677 T; 0 other; accgcgcctt cttttcctgc gagggcccgg tagggaccga gcgctttgat ttaaagcctg 60 gttctgcttt gtatgattta tctaaagcag cccaatctaa agaaaccggt cccgggcact 120 ataaattgcc taacaagtgc gattcattca tggatccaca gaacgccctg tattatcagc 180 cgcgggtacc cacagcagct ccgacatccg gaggagtgcc gtggagtcgc gtaggcgagg 240 tagctatttt gagctttgtt gcattgattt gcttttacct gctttacctt tgggtgctga 300 gagaccttat cttagttctg aaggctcgac aaggcagatc cacggaggag ctgatatttg 360 gtggacaagc tgtggatagg agcaacccta tccctaatct accttcacca ccaagtcagg 420 gcaatcccgg gccatttgtt ccaggcacgg gataagcaat cagccatgtc cacgtccaag 480 aggaagcggg gagatgattc gaattggaat aagcgggtgc ctaagaagaa gccatcttca 540 gctgggctga agagggctgg aagcaaggcc gataggccat ccctccaaat ccagacactc 600 cagcatgctg ggaccaccat gataactgtc ccatccggag gagtatgtga cctcatcaac 660 acctatgccc gaggatctga cgagggcaac cgccacacca gcgagactct gacgtacaag 720 atcgccgtcg actaccactt cgttgccgac gcggctgcct gccgctactc caacaccgga 780 accggtgtaa tgtggctggt gtatgacacc actcccggcg gacaagctcc gaccccgcaa 840 actatatttg cctaccctga cacgctaaaa gcgtggccgg ccacatggaa agtgagccgg 900 gagctgtgtc atcgcttcgt ggtgaaacgg cgatggttgt tcaacatgga gaccgacggt 960 cggattggtt cggatatccc tccctcgaat acaagttgga agccttgcaa gcgcaacatc 1020 tacttccaca agttcacgag tgggttggga gtgagaacgc agtggaagaa tgtaacggac 1080 ggaggagttg gtgccatcca gagaggagct ctgtacatgg tcattgcccc aggcaatggc 1140 cttactttta ctgcccatgg gcagacccgt ctgtacttta agagtgttgg caaccagtaa 1200 tgaataaaaa ctcccgtttt attatatttg atgaatgctg aaagcttaca ttaatatgtc 1260 gtgcgatggc acgaaaaaac acacgcaaac aatacagggg ggtagtcggc gggcggctaa 1320 gggtggtgct cggcgggcag aacatcgaaa aatcaagatc tatatgaatt acacttcctc 1380 cgtaggagga agcacagggg gagaatacca cttctccccc ggcgacataa tgtaaatgac 1440 gcagtttgcc tcgaaatact ccagctgccc tggagtcatt tccttcatcc aatcttcatc 1500 cgagttggcg aggattattg taggcttaga cttcttctgc acctttttct tcttaccata 1560 cttggggttt acaatgaaat ccctctgaca gccaactaac tgtttccaac aaggacagaa 1620 tttaaacgga atatcatcta cgatgttgta gattgcgtct tcgttgtatg aagaccaatc 1680 aacattattt tgccagtaat tatgaacccc taggcttctg gcccaagtag attttccggt 1740 tcttgttggg ccgacgatgt agaggctctg ctttcttgat ctttcatctg atgactggat 1800 acagaatcca tccattggag gtcagaaatt gcatcctcga gggtataaca ggtaggttga 1860 aggagcatgt aagcttcggg actaacctgg aagatgttag gctggagcca atcgttgatt 1920 gactcattac aaagtaaatc aggtgaggag ggtggatgag gattggtgaa ctcttcctga 1980 atctcaggaa aaagcttatt tgcagagtat tcaaaatact gcaattttgt ggaccaatca 2040 aaggggagct ctttctggat catggagagg tactcttctt tggaggtagc gtgtgaaata 2100 atgtctcgca ttatttcatc tttagaaggc tttttttcct ttacctctga atcagatttt 2160 cctaggaagg gggacttcct aggaatgaaa gtacctctct caaacacagc cagaggttcc 2220 ttgagaatgt aatccctcac tctgttaact gacttggcac tctgaatatt tgggtgaaac 2280 ccatttatat caaagaacct tgagtcagat atccttatcg gcttctctgg ctgaagcaat 2340 gcatgtaaat gcaaacttcc atctttatgt gcctctcggg cacatagaat atatttggga 2400 atccaacgaa cgacgagctc ccagatcatc tgacaggcga tttcaggatt ttctggacac 2460 tttggatagg ttaggaacgt gttagcgttc ctgtgtgaga actgacggtt ggatgaggag 2520 gaggccatag ccgacgacgg aggttgaggc tgagggatgg cagactggga gctccaaact 2580 ctatagtata cccgtgcgcc ttcgaaatcc gccgctccat tgtcttatag tggttgtaaa 2640 tgggccggac cgggccggcc cagcaggaaa agaaggcgcg cactaatatt 2690 //