ID   AF000720; SV 1; linear; genomic RNA; STD; VRL; 1884 BP.
XX
AC   AF000720;
XX
DT   05-DEC-1997 (Rel. 53, Created)
DT   02-JAN-2000 (Rel. 62, Last updated, Version 2)
XX
DE   Colorado tick fever virus M5 segment, complete sequence.
XX
KW   .
XX
OS   Colorado tick fever virus
OC   Viruses; Riboviria; Reoviridae; Spinareovirinae; Coltivirus.
XX
RN   [1]
RP   1-1884
RX   PUBMED; 9367376.
RA   Attoui H., De Micco P., de Lamballerie X.;
RT   "Complete nucleotide sequence of Colorado tick fever virus segments M6, S1
RT   and S2";
RL   J. Gen. Virol. 78(11):2895-2899(1997).
XX
RN   [2]
RP   1-1884
RA   Attoui H., de Lamballerie X., Cantaloube J.F., De Micco P.;
RT   ;
RL   Submitted (22-APR-1997) to the INSDC.
RL   Virologie, Faculte de Medecine, BD J Moulin, Marseille 13005, France
XX
DR   MD5; db5922a0781c33a2bdd09e0c736659b3.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1884
FT                   /organism="Colorado tick fever virus"
FT                   /chromosome="M5 segment; segment 9"
FT                   /strain="Florio strain; ATCC reference VR-90"
FT                   /mol_type="genomic RNA"
FT                   /note="40 passages in BHK-21 cells"
FT                   /db_xref="taxon:46839"
FT   CDS             41..1849
FT                   /codon_start=1
FT                   /transl_except=(pos:1052..1054,aa:OTHER)
FT                   /product="VP9'"
FT                   /note="one of three different amino acids (arginine,
FT                   cysteine or tryptophan) is incorporated at amino acid
FT                   position 338 during read through"
FT                   /db_xref="GOA:O55265"
FT                   /db_xref="UniProtKB/Swiss-Prot:O55265"
FT                   /protein_id="AAB88255.1"
FT                   /translation="MFGYLQLINPTTDIYIKDYGNFSGIVAHQAYDPVRRDHMLLRSMK
FT                   LHFGPNSKLLWLGDFHAITLSHANMIFGASSVGFKGVNVSTLPPDTLTTGIRPRPVVTM
FT                   DFAQLKGFYSDLAQKEDYIMYFHDMVKFVSQTGGAPVSLRDVFLWISESVTGPVVIRTD
FT                   CVTGCNNLWPSGSGHFYFPYERKTKFRYGTFVECGKNLTWSEGPQWDVKSYVVGFNFVT
FT                   RANSLLGGGFDEVCYRLMMQAEVPRQVAEQGLTLEQAVRKLASEHHMSRPQLTSRRVPG
FT                   ITDQTKYEAYVVCGPFRTGQVVADSLQMAEDLAWREMLGTLKTLIHDEARQTKGCCXRC
FT                   WPGELYLINIESAGFREGASAAAAYQAGFLRAFYGCLNTSVCSFSSLDDGLRWLCTRLS
FT                   TKSIGAKGRTVVLFGCHSEGEVLADGFGKTYSAAEAREQVALSGKIGGSAQVIVVWQRC
FT                   RESKLQRLLPELAMVSYVPEEVVAGFKRVRELETYPQWCLWLYRSMIESMGGIDVGVRD
FT                   ASPLTESGVVYQVEAAQYGMRTTRVRRADGTLDYQGLSWTSLLMLLLGHYGADQTYEAL
FT                   RVSSMFIRAREVGWRKRGTFSCIVST"
FT   CDS             41..1054
FT                   /codon_start=1
FT                   /product="VP 9"
FT                   /db_xref="GOA:O93214"
FT                   /db_xref="UniProtKB/Swiss-Prot:O93214"
FT                   /protein_id="AAB88254.1"
FT                   /translation="MFGYLQLINPTTDIYIKDYGNFSGIVAHQAYDPVRRDHMLLRSMK
FT                   LHFGPNSKLLWLGDFHAITLSHANMIFGASSVGFKGVNVSTLPPDTLTTGIRPRPVVTM
FT                   DFAQLKGFYSDLAQKEDYIMYFHDMVKFVSQTGGAPVSLRDVFLWISESVTGPVVIRTD
FT                   CVTGCNNLWPSGSGHFYFPYERKTKFRYGTFVECGKNLTWSEGPQWDVKSYVVGFNFVT
FT                   RANSLLGGGFDEVCYRLMMQAEVPRQVAEQGLTLEQAVRKLASEHHMSRPQLTSRRVPG
FT                   ITDQTKYEAYVVCGPFRTGQVVADSLQMAEDLAWREMLGTLKTLIHDEARQTKGCC"
XX
SQ   Sequence 1884 BP; 431 A; 385 C; 548 G; 520 T; 0 other;
     gacattttgt gtcacgaacg ttcaccctgc gttcagcatc atgtttggat atctgcagct        60
     catcaacccc accactgaca tttacattaa agattatgga aacttttctg ggattgttgc       120
     acaccaagct tatgaccctg tccgccgaga ccatatgctt ttgagatcaa tgaaattgca       180
     ctttggacca aattcaaaat tactatggct aggcgatttt cacgccatca ccctgtcaca       240
     tgcaaatatg atatttggag caagctcggt cggatttaag ggcgttaatg tgtctacttt       300
     gccccctgac accctgacga ctggcattcg ccctcgcccc gtagtcacaa tggattttgc       360
     acagctaaaa ggtttttaca gcgacttagc tcagaaggag gattacatca tgtatttcca       420
     tgacatggtg aagtttgtca gccagacagg aggtgctcct gtatcattga gagatgtgtt       480
     cttgtggatt agtgaaagcg tgaccgggcc tgttgtcatt cggacagatt gtgttacggg       540
     ctgcaacaac ttatggccaa gtggtagtgg acacttttat ttcccttatg agaggaagac       600
     caaattcagg tatggcacgt ttgttgagtg tggcaaaaat ttgacttggt ccgaagggcc       660
     tcagtgggat gtgaagagtt atgttgtggg ctttaacttt gtcacacgag cgaactcgct       720
     gcttggtggg ggttttgacg aggtttgcta tcgattgatg atgcaggcgg aagtgcctcg       780
     gcaggttgca gagcaaggat tgacacttga acaagcagtt cggaagttgg cgtcagaaca       840
     tcacatgtct agaccgcaat tgacttcacg ccgagtgcct ggaatcacag accagacaaa       900
     gtatgaggct tacgtggtat gtggtccttt ccgaactgga caggtagtgg ctgattcttt       960
     gcagatggct gaagatctgg cgtggcgaga gatgcttggt actctgaaaa cattgattca      1020
     cgatgaagcg cgtcaaacca agggctgctg ttgacggtgt tggcctggtg agctgtacct      1080
     cattaacatc gagagtgcag gctttcgtga aggagcttca gcggctgcgg cttaccaggc      1140
     gggctttttg cgtgcttttt atgggtgtct gaatacatct gtgtgttcct tttcgtcttt      1200
     ggatgatggg ttgaggtggc tgtgcacacg attgagcaca aaatccattg gcgcaaaagg      1260
     acgaaccgtg gttctgtttg gatgtcactc ggagggtgag gtactggcag atggattcgg      1320
     aaaaacatat tcagcagcag aggcgcgtga gcaggtagcc ctgtcgggaa aaatcggtgg      1380
     gagtgctcaa gtgattgttg tgtggcaacg ttgtcgtgag tccaaactcc aaaggttgct      1440
     gcctgaattg gctatggtgt cttatgtgcc agaggaggtt gttgcaggct ttaagcgagt      1500
     gcgggagctt gagacctacc cccaatggtg tctatggtta tatagaagta tgattgagtc      1560
     tatggggggt attgatgttg gcgtgcgcga cgcatctccg ttaactgaga gcggggttgt      1620
     ttatcaggtg gaggctgctc agtacggaat gcgaacgacg cgagtgagga gggcagatgg      1680
     cacgcttgat taccagggtc tgagttggac atcgttgttg atgctgttgt tgggtcacta      1740
     tggggctgac cagacgtatg aggctcttcg cgtcagttcc atgttcatcc gtgctcgtga      1800
     agtcggctgg cgcaagaggg ggaccttttc ctgcatagta tccacatgat gtgacacacc      1860
     ctcatatagg gaatccttgc agtc                                             1884
//