Dbfetch
ID AB744679; SV 1; linear; genomic RNA; STD; VRL; 4093 BP. XX AC AB744679; XX DT 01-MAR-2013 (Rel. 116, Created) DT 10-MAY-2013 (Rel. 116, Last updated, Version 2) XX DE Rosellinia necatrix quadrivirus 1 P3 gene for RNA dependent RNA polymerase, DE complete cds, segment: 3. XX KW . XX OS Rosellinia necatrix quadrivirus 1 OC Viruses; Riboviria; Quadriviridae; Quadrivirus. XX RN [1] RP 1-4093 RA Suzuki N., Kondo H.; RT ; RL Submitted (28-AUG-2012) to the INSDC. RL Contact:Nobuhiro Suzuki Okayama University, Institute of Plant Science and RL Resources; Chuo 2-20-1, Kurashiki, Okayama 710-0046, Japan XX RN [2] RC DOI:10.1007/s00705-012-1580-8 RX DOI; 10.1007/s00705-012-1580-8. RX PUBMED; 23277362. RA Lin Y.H., Hisano S., Yaegashi H., Kanematsu S., Suzuki N.; RT "A second quadrivirus strain from the phytopathogenic filamentous fungus RT Rosellinia necatrix"; RL Arch. Virol. 158(5):1093-1098(2013). XX DR MD5; ca81d7011597b8490cacdf094ea14fdb. DR EuropePMC; PMC6356713; 30585188. XX FH Key Location/Qualifiers FH FT source 1..4093 FT /organism="Rosellinia necatrix quadrivirus 1" FT /segment="3" FT /host="Rosellinia necatrix" FT /strain="W1118" FT /mol_type="genomic RNA" FT /country="Japan:Ibaraki, Tsukuba" FT /note="this virus has alternative 5- and FT 3-terminalnucleotides C or U, and G or A, for the FT plus-strand RNA sequence respectively" FT /db_xref="taxon:1000373" FT CDS 24..3956 FT /codon_start=1 FT /transl_table=1 FT /gene="P3" FT /product="RNA dependent RNA polymerase" FT /db_xref="GOA:M1VQL0" FT /db_xref="InterPro:IPR001795" FT /db_xref="UniProtKB/TrEMBL:M1VQL0" FT /protein_id="BAM93353.1" FT /translation="MDNHTDIETDTYHDDVRYERSRMGYKSRAKTDVVNGKEYRLRQEQ FT WRLISKEGGRRLRTQAADWLRELETGDGHVYTSLSEDAAAMLRDMGYSGGRGDAPTTVY FT RPSATSADSISCPDVLRAVLDVVTKAESLKSNHNVAALSEEDMCAAISYLRPKTVVGLS FT NTWAPTQCEGHWIEDALMNAVVAAFRQAENVCGEDLAQANVIIQALLTKLVRHNLVYDA FT DYGKDRRRREPHEGSMGATLKSAVRAVTDRTLQNELFNRASDCFETARSKWLANAKTAR FT GRATRQANPLLVDRSVSDSCCNDWLLARMEDVWYDWNVTGWIGAAMIAVALTVDPLTSG FT MSTGQLNSIIDSFYSGSTWRKLVDLGTTMDATPDRESGEVTAAALRAVRLRASLNPLAA FT LCDDLEYSYRAGNQLAAIERELLSAHFRRVISNENCYPEMTKIPACSDRIQQAPYVAIT FT ESSGEYTYQHTDIAGSNAVLLGWRSEPDKAPDKSTLTLSGEQYDVYGFSGQGQRAYYIK FT YDSCHNRLANGVTAHAGGSLYRESAFGCSAPVVEFLDQFGHNYDHIMTGEERVALLMAL FT STPAITQQHHQHLSLVNVLNAVGSWDPVLDHVLSWSDINYTMFTTIALAVSGLPPQARF FT LINKWGGWSCESAKDYHKNAKNFSTACKSLDNKVVLLGEPLDLAVFFEWETVLNRGHGK FT MSWSAEIRDRRDASQNVDLPLTEAEGHIRDIMIEIKRKMKRRGGKDLLHRSWEQFYSAR FT ARETPAGSASSLDPYILECKQAVKNATKADITKTQVLAFMEDGYTIDRLLSKPPMVLAT FT VSIKYEWGKMRALFAAVVEHYLLAAFAFTGVEDFMPDDCPVGKGADASAVCAKVMAMAK FT RSVYVCVDAANFNILHTFALMSAVIRIYGEVFDDWLSDEQKATVKWLEQAELDQRVVLT FT RSQLDTDLYEEGVRDGWIAQDGDKLIVTVLGGLFSGHRLTMFINTVLNRVYYRVACARA FT YTQPDALHSGDDVFACYLTIAEALSVKAGFKSFGYTLQLTKCFLLGVAEFLRISHKNNN FT TSQYYARSCATSVHGRIETGEANDMQALATANVTRACEAMLRYGDRRIFMQVLNMQNAG FT VCARWSVPCYVYAAYLVTPTLLGGMRCGHSSESLIANFAIERIANVNSPAVAFFQTTPG FT VKQAARDIVHALGLTEHYNRAGRAIAAGIATRSVLSAFSMSLRWMGDQVHSAMKRWAGK FT YSHIRQSRDYILSKSVGLFNLLWEEGHFGEQFDRVTSVHSTWLGKILEVALMPNQVLKN FT GLADTLQEKVAIVMEVRRIQAGSREW" XX SQ Sequence 4093 BP; 1081 A; 926 C; 1206 G; 880 T; 0 other; cacgattcag ccccacacta accatggata accacaccga tattgagact gatacctacc 60 atgatgacgt ccgctacgag agatccagga tgggatacaa gtctcgcgct aagactgacg 120 tagtcaatgg aaaagaatac agattgagac aagagcagtg gcggctgatt agcaaagaag 180 gaggtcgcag gttaaggact caagcagcgg actggttgcg tgagttggag actggtgatg 240 gacatgtgta cactagcttg agtgaagacg ctgcggcgat gttgcgggac atgggttact 300 caggagggcg aggtgatgcg ccaactacag tgtataggcc gagcgcgacg agtgccgata 360 gcatatcatg ccctgatgtc ttgcgagcag ttctggatgt ggtgacaaag gcggaaagcc 420 ttaagagtaa ccataatgtg gcggctctgt ctgaagagga catgtgtgca gcaatatctt 480 acttgcgacc caagacggtc gtcggtctga gcaacacatg ggcgccgact cagtgtgaag 540 gacattggat cgaggatgca ctaatgaacg ctgtagttgc ggcgtttcgg caggctgaaa 600 atgtctgtgg agaagactta gctcaagcca atgtgatcat acaagcgtta ctcaccaagt 660 tggtacgtca caatctggtg tacgatgctg actatggcaa agacaggcga aggcgtgaac 720 cgcatgaggg ctcaatgggt gcgacgctca aatcagccgt ccgggcagtg actgacagga 780 cactccaaaa tgagttgttc aatagagcta gcgactgctt cgagacagct aggtctaaat 840 ggctggcgaa cgcgaaaacg gctcgaggcc gtgcgaccag gcaagctaat ccgctgctag 900 ttgacaggtc ggtgtcagac tcgtgttgca atgactggtt gctggcacgt atggaggatg 960 tatggtacga ttggaatgtg actggttgga ttggggcagc tatgatcgct gttgcgctaa 1020 cggtggaccc gctaacttcg gggatgtcga ctgggcagtt gaattccatc attgattcct 1080 tctactcagg ctcaacgtgg cggaagctag tggatctagg tactactatg gatgcgacgc 1140 cagacaggga atctggtgag gtgactgcag cagccctgcg cgctgtgagg ctgcgtgcga 1200 gcctgaatcc actagctgca ttgtgcgatg acttggagta ctcgtatcgt gcgggcaatc 1260 agttggcggc aatcgagcga gaactgctga gtgcacactt caggcgtgtc attagtaacg 1320 agaactgtta cccggaaatg actaaaatac cagcatgcag cgatcgcatc caacaggctc 1380 catatgtcgc cataactgag agttcaggtg agtacacgta tcaacacact gacatagcag 1440 gctccaatgc agtgttactg ggatggcggt ccgaacctga caaagcacct gacaagtcaa 1500 cactgacgct cagcggagaa cagtacgatg tttatggttt ttcaggtcag gggcagagag 1560 catactacat caagtatgat agttgccaca ataggttggc caatggcgtc actgcacacg 1620 ccggcggatc gctatatcgg gagagtgcct ttgggtgctc agcccctgtg gtggagttcc 1680 ttgaccaatt tggccataac tacgatcaca tcatgaccgg cgaagagaga gtagctctgc 1740 taatggcact gtccacaccg gccatcacgc aacagcatca ccagcacttg agcctagtaa 1800 acgtgctgaa tgcagtgggt tcatgggacc cagtgctgga tcatgtttta agctggagtg 1860 acattaacta cacgatgttc accactatcg cattagcagt gtcggggttg ccaccacagg 1920 cgcgtttcct gatcaataaa tgggggggat ggagttgcga gagtgcaaag gactaccaca 1980 agaatgccaa gaactttagc acagcatgca aaagccttga caacaaggtg gtgttgctag 2040 gcgaacccct cgacctggcc gttttcttcg agtgggagac ggtgctgaac agagggcacg 2100 gtaagatgtc atggtcagcg gagatccgcg accggcgcga tgccagccaa aatgttgact 2160 tgcctttgac agaagctgag ggtcacatca gagatataat gatagaaatc aagcggaaga 2220 tgaagcggcg tggaggcaaa gatctgttgc acagaagctg ggaacagttc tattctgcca 2280 gagcgcggga gacgccagcc gggtccgcct cctcattgga cccgtacatc ctagagtgta 2340 aacaggcagt aaagaatgcg accaaggctg acatcacaaa gacacaagta ctggccttca 2400 tggaagatgg gtatacgata gacaggctgc tgtccaagcc gccaatggtc ttggcgactg 2460 tatcgattaa gtacgagtgg ggcaagatga gggctctgtt cgccgcggtc gtggagcact 2520 atctgctagc agcttttgct ttcacaggcg tggaagactt catgccagat gactgccccg 2580 taggtaaagg ggcggatgcc tcagcagtat gtgctaaggt gatggccatg gcaaagcgtt 2640 cagtgtacgt ctgcgttgat gcagccaatt tcaacatatt gcacacattt gcattgatga 2700 gtgctgtcat cagaatatat ggcgaggtgt tcgacgattg gctgagtgac gagcagaaag 2760 caacagtcaa atggcttgag caagctgaac tagaccagcg tgtggtattg acccgtagtc 2820 agttagacac agacctgtat gaagaaggcg tgcgtgacgg gtggatcgca caagacgggg 2880 acaagttaat tgtgaccgtg cttggcggcc tgttctcagg gcacaggttg acaatgttca 2940 taaacacagt gttgaaccgg gtgtactaca gagtagcctg tgccagagca tacactcaac 3000 ctgatgcgct ccactctggt gacgacgtct ttgcgtgcta tctgacgata gctgaggcgc 3060 taagcgtgaa ggcagggttc aaaagtttcg gttacacgct gcagctgacg aagtgcttct 3120 tgctgggtgt ggcagagttc ttgcgcatat cccataagaa caacaataca tcacaatact 3180 atgcacgtag ttgtgcaacc tctgtacacg ggcgtataga aacaggtgag gcaaatgaca 3240 tgcaggctct ggcaacggcc aacgtgaccc gcgcctgcga agcaatgctg cggtatggag 3300 acagacgcat ttttatgcag gtcttgaaca tgcaaaacgc cggcgtctgc gccaggtggt 3360 cagtgccgtg ctatgtgtac gcagcgtatc tggtaacacc aacgctgcta ggcggcatga 3420 ggtgcggcca ctctagtgaa tccctgatcg caaacttcgc gatagagcgt atagcgaacg 3480 tcaatagtcc ggcagtagcg tttttccaga ccacgccagg cgtgaaacaa gcagctagag 3540 acattgttca tgctctgggg ttgacggagc attacaacag ggcgggcaga gcaattgcag 3600 caggtatcgc aacacgcagc gtgctgtccg ctttcagtat gtcgctgcgc tggatgggcg 3660 accaagtgca cagtgcaatg aagcgatggg caggaaagta ttcgcatata agacagtcaa 3720 gagactacat actgtccaaa agcgtcggtc tcttcaattt attgtgggag gaagggcatt 3780 tcggagagca gttcgataga gtcacatcag tacacagtac atggctggga aagatactag 3840 aagtagcttt gatgccaaat caagtgctga aaaacggact tgccgacact ctgcaagaga 3900 aagtcgcaat cgtcatggag gtcagacgca tacaggcagg atctagggaa tggtgatgag 3960 tgctgagggc gggcgcggtt accgaggcag atagcaaaca caagcaggaa cagcagtgta 4020 taacaagtca atacatatta tcagcggaaa cgcaattcat aagtgcgcgt gacgttgact 4080 ttgagaatat tcg 4093 //