ID AB735629; SV 2; linear; genomic RNA; STD; VRL; 7475 BP. XX AC AB735629; XX DT 08-AUG-2012 (Rel. 113, Created) DT 17-JUL-2013 (Rel. 117, Last updated, Version 3) XX DE Persimmon latent virus genomic RNA, complete genome, clone: Kaki13-14. XX KW . XX OS Persimmon latent virus OC Viruses; Riboviria; dsRNA viruses. XX RN [1] RP 1-7475 RA Ito T., Suzaki K., Nakano M.; RT ; RL Submitted (13-JUL-2012) to the INSDC. RL Contact:Takao Ito National Institute of Fruit Tree Science, Grape and RL Persimmon Research Station; Akitsu, Higashihiroshima, Hiroshima 739-2494, RL Japan XX RN [2] RC DOI:10.1099/vir.0.054445-0 RX DOI; 10.1099/vir.0.054445-0. RX PUBMED; 23704275. RA Ito T., Suzaki K., Nakano M.; RT "Genetic characterization of novel putative rhabdovirus and dsRNA virus RT from Japanese persimmon"; RL J. Gen. Virol. 94(Pt 8):1917-1921(2013). XX DR MD5; 9fc48e1361ae1be99f6d7e796119cd27. XX FH Key Location/Qualifiers FH FT source 1..7475 FT /organism="Persimmon latent virus" FT /host="Diospyros kaki" FT /strain="persimmon isolate" FT /mol_type="genomic RNA" FT /country="Japan:Hiroshima" FT /clone="Kaki13-14" FT /db_xref="taxon:1211481" FT CDS 334..3561 FT /codon_start=1 FT /transl_table=1 FT /product="proline-alanine-rich protein" FT /db_xref="UniProtKB/TrEMBL:R4X5Y4" FT /protein_id="BAN29037.1" FT /translation="MAQKTMATKAELDPPVGSGEGAQTLAMQAGAMLGPSSEGPSPAAQ FT SQGQQSGAHFEASTCSPTDRTNSLSPGHPLLPRGVPVPAGGIQPHLAFMPHHAERPQEV FT VRIRRRHGRSLSPPSSGRFGGEPAPGPSPRAPQGTAPRRGPKSRAHYAARPQGSPSREG FT GEGGVDASVVGVGQIRADTVNGARANLLPPEDVPRNEASPVLTPLHESPPRTPSPPVLS FT ESQQYAIHEGFVWVRDLSPSSGSDSDVLLVSESDLPKYEGELRSRLEQACRVATIYRRN FT VLGMTEESERQKIDIPYLPCPHGRVALPLHSEGQEELPPCAPSSPPAPSSSDSENSSEE FT ERRSARSARRLNPSTPRSGLIDQRYTVKFGDHSIHTSDVSPDPIYSIRTIDGVSDFFSR FT GLQFVETMYDSFDVDAHSIRVTSQLVCADQPLCVSQAFPVRGEAFHSHNRNFTIADTTM FT AVVNFGPTRVKGRIDDALLTPYMIGGVPNSRSVSSAITPELRPANRNLILESASVMQSN FT LTYYDNSMLYAKLIWNALLIDVYAHVGLVPAVIPFEAERSVSWINLDDANLAVPALTVE FT FAKGSIMLLQDRDFTTAELQEVQWLSVFGRRFLAPANGPTPVSSYVNWPRVPICLLAHG FT AQPAALPACAMLTSARLLSFCAKLAASRGEWEDCLKGAYLAMDVLGTDYNITDNHAYPM FT NVFLGLENLRVPAPSDYNFFCRLLGLCPPADVARRDEFFSLMAASSANRVRGVSLYVAS FT MRTFSTTTLHSLSIGTGNLVDWCTGAIPQGGVNMVLQSGIVNPQGDYNTESAMFEKPKA FT AFERFLGFRIEKGFYAGSNWMPACGSLAAALSYYSPLISEADAPPRKHSCLAIDDFLLM FT RPQEWGVLGGTTQIDFHQDLVAFSTPENRGVFSDRGDATYRQRLTSPTPYLFVPYGIQL FT LNAVCQHFEVAEHVPYYRGAVYNGGAESSFSTTPARFPSSAWIEDLSMFEPCALTSFSW FT IDHTVRAPCMVGAVRMTASMLRALQMWRGATIPKTGCPLARIPGFALQGLAPPPFAGMG FT GLGAIGGVVGGGAADGADTPNQPSGNG" FT CDS <3555..7388 FT /codon_start=1 FT /transl_table=1 FT /product="RNA-dependent RNA polymerase" FT /note="RdRp domain of PArp-RdRp fusion protein generated by FT -1 translational frameshift" FT /db_xref="GOA:R4WAJ7" FT /db_xref="InterPro:IPR001795" FT /db_xref="UniProtKB/TrEMBL:R4WAJ7" FT /protein_id="BAM36036.2" FT /translation="RVELTTVGRDVGSVWSCPPKLNPYPDYTLGRGDNVIRIKDRLSSF FT IISDILNCAMRAHGVGSSRVVVEVKHHPYNMDHPYDVIMTATPDVRGQDCLVKCQNAVL FT TAIRKATNSAHLQTCVEDEVLDYMFPDYNRCVTRPSIARAYAGSVAKVLTDIEDNPADK FT KPTISLALAAILAPEFHGGIGVYINHMTTLCGNWTGLVKAVDLLHARAIMQHHFQDAGK FT GGAEDSAGIGLAGLVRELFLVYSGCGQTGFFWPDVGQDATSLEEIRTMLSIRIKLSDRW FT ADLLAPVIWAIMLSSRRGGGDAVKAEFPHLASLLNKASEVMKRLGPFELMVKLGSDLHE FT RDMVADPASFDYACRVRRHVSWVCVNIKAAPTRAQAKSIHKLFPPTSATDARHATTRPD FT ALLWHYISGPTCYQDLDPNMRSVASIQARVSAAKTLFRHIPVGTNGTLVSMMLLSALCT FT SNGDVVMNNYIVNNALVRSGNSQKKLLKACSTFIRKSSCDLTQTKVRAEDVAVLTYFDL FT GFGRSMNRSDWQEEIDNRGFRKHHIQHPRAPNVSKALVSELKTVAFGDNTLPDPKFEQA FT IRAKLAGYCRKLVLGKKTKETMARFYRRRNDWMASGSSGGYKSKTMGELINGEGAGPIS FT VDKRVWAEEHDFKHILRYMRSAPKELARASEKYENGKSRAIYGVAPEHYVINTYVTQGM FT EERLHNIPGLEKGATGVTELGYIKKRCNITANARKECTMLDYADFNVQHSLSCQYILFD FT EMLKAGVEVGACPDWVKACSWLRDAKLNQESYFPGKSRPVKITQGMFSGTRSTDLINTL FT LNLAYYEVAADAVSSYGYSSQDVYHVHQGDDVWLSSDNAAWAATLYYVMNAQGFIFQDS FT KQMFGPSRGEYLRVLYHSEGAVGYLARSLANYLQRPIQNKTDIGGQAWMESISDTCRVM FT QRRGLSIYGASVVWQDVLGAKGTVHLHERDRAKIKLPLSYIVAPREAGGMGCPPPGHLV FT QASLLPPAPTDQLSWKADWSALPHRMADDWIEHVSSIAHSLHKVSINAPALRENIKHTT FT HEPILASHGLARHNKKWKEQWSSYRKTLASPNNVVTYSPTPNLQSMRSSLSTVIPKKGN FT LIAGGSLDYITKPIDCNTNSPGSAGLLLNFSETINKYVTQSTFKSTSRTSIALGLSKTA FT AMTFILREAVEYSRANADLVSLATQLIKYGKADWLDLLLAGGSSILTPLAQFMDGKFVN FT VFGSLLHQILISASVGKEIGSVYEVMATHNNYINKYVQALSDCRYAPQTMLY" XX SQ Sequence 7475 BP; 1756 A; 2013 C; 2075 G; 1631 T; 0 other; gatttaaacc ctggttttct tcatcttttt gaaggagatt ttttagggtt ttaaatccct 60 ttctcagttg ggtgttcgca ctcgattgtt tgagaccttc gggcggccta cgtcactacc 120 cattcgggta ggtacaggtt tctgatctct tgaacttttg agtgcgttcc atcaacccga 180 gaaactgggg acttgacccg gatcctgatg cgtggcggta aagaccgaag caggattcgg 240 accccaaggc cctgagggag tggtagggaa gaggtccggt gctctaaata aaaccctacg 300 ctcaacaccc ctcagggtga cgagcactga gccatggcgc aaaaaaccat ggcaacaaaa 360 gccgagttag atccacccgt gggatcgggc gagggggctc aaaccctcgc tatgcaagcg 420 ggagctatgt taggtccttc ctccgagggg ccgagcccgg cagctcaaag ccagggccag 480 caatcggggg cgcatttcga ggcgtcaacc tgttcgccga cagaccgtac taatagtctg 540 tcacccgggc acccactact cccccgcggt gtcccggtgc cggccggtgg aattcaaccc 600 cacctggcct tcatgcccca ccatgcggag cggccccaag aggtggtccg catcaggcgg 660 cggcatgggc gatccctgag tcctccatcc tctggaaggt tcggggggga gcccgcacct 720 gggccgtcac cccgcgcccc gcagggcacg gccccaaggc gaggccccaa gagcagggcc 780 cactatgcgg cacggccgca aggttcccct tcccgagagg gaggggaggg aggggtcgac 840 gcctctgtcg tgggcgtggg ccagattcgc gccgatacgg tgaacggcgc gcgggcaaac 900 ctcctccccc cagaggacgt gcccaggaat gaagcatcac cggtcctaac ccccctacac 960 gagtctcccc ccagaacacc ctcccctcca gtcctatcgg aatcccaaca gtacgccatc 1020 catgagggat tcgtttgggt gagagacctc tctcccagtt ccggatctga ttccgacgtg 1080 ttgttggtca gcgagagcga tctcccgaag tacgaggggg agctgaggtc acgcttggag 1140 caggcatgta gggtggccac catataccga cgcaatgtgt tgggtatgac agaagagagt 1200 gagcgccaga aaatagacat cccctattta ccttgccccc atggcagagt ggccttgccg 1260 cttcacagtg agggtcaaga agaactcccc ccctgcgcgc cctcttcccc ccctgcacca 1320 tcgtcctctg attcagaaaa ctcctcggag gaggagagaa gatctgcccg ttcggcgagg 1380 aggttgaacc cctcaacccc aaggtcaggt cttattgacc aacggtacac tgtaaaattc 1440 ggggaccatt ccatccacac gtctgacgtg tctccggatc ctatttattc gatccgcact 1500 atagatggag tctccgactt cttttcgagg gggttgcagt ttgtagagac gatgtacgac 1560 tcatttgacg tggatgccca cagcataagg gtcacttccc aactggtgtg tgcggaccag 1620 cccctctgtg tctcacaggc cttccctgtg cgtggagagg cgtttcatag ccacaatagg 1680 aacttcacaa tcgcagacac cactatggct gttgtcaatt tcggaccgac aagggtcaag 1740 ggcagaatag acgatgccct cctcactcca tatatgatag ggggggtacc aaactcccgg 1800 tctgtgtctt cagccatcac tcccgaatta agacctgcca accgcaatct catacttgag 1860 agtgccagtg tcatgcagtc caatttgacc tactatgaca acagcatgtt gtatgcgaag 1920 ctgatatgga atgcgttact catagacgtg tacgcccacg tcggattggt tccggcagtc 1980 atacccttcg aggcggagcg gtccgtttct tggatcaact tagatgatgc caatttggcc 2040 gttcccgccc tgacggtcga gttcgctaag ggcagcatca tgttgctcca ggatcgggat 2100 ttcacgaccg ccgaacttca ggaagtccag tggctgtccg tgtttggacg ccgcttcctc 2160 gccccggcca atgggccaac cccggtgagc agttatgtta attggccgag ggtgcctatc 2220 tgcctactgg ctcatggggc ccaacccgcg gccctgcccg cttgtgccat gttgacatct 2280 gccaggctgc tgtctttctg cgccaagctg gctgcgtccc gcggggagtg ggaggattgt 2340 ctcaaaggcg cttacttggc aatggacgtg cttgggacag actacaacat caccgacaat 2400 cacgcctacc cgatgaacgt tttcctaggg ctggaaaact tgagggtgcc agcccccagc 2460 gattacaatt ttttctgtag gttgctaggg ctttgcccac ccgctgatgt ggctcgtagg 2520 gatgaattct tctccctgat ggctgctagc agcgctaata gagtgcgggg ggttagtctg 2580 tatgtcgcta gcatgcggac attttctaca accacactgc actccctcag tataggaacc 2640 ggaaatctgg tggactggtg cacaggggcg atcccccagg ggggtgtgaa catggtgctg 2700 caatccggga ttgttaaccc acaaggagat tacaatacgg aatctgccat gtttgaaaaa 2760 cccaaggcag ccttcgagcg gttcctgggg ttccgcattg agaaggggtt ttacgccggc 2820 agcaactgga tgccggcttg tggttcccta gctgcggctc tgtcgtacta cagcccactc 2880 atctctgagg ccgacgcgcc tcctaggaag catagttgtc tggccataga cgatttcctt 2940 cttatgcggc cacaggagtg gggagtgttg gggggcacca cccaaataga tttccaccaa 3000 gacctggtag ccttttcaac ccccgagaat cgtggtgtgt tttcagatcg cggggatgct 3060 acgtacaggc aacggctgac tagccctacc ccgtacttat ttgtgccgta tggcatccag 3120 ctcctgaatg ccgtgtgcca acactttgag gttgctgagc acgtgccgta ctaccgcggc 3180 gctgtgtaca atggtggagc agaatccagt ttttcaacaa ctccggcacg tttcccaagc 3240 tcagcatgga tcgaagatct gtccatgttc gagccatgcg ccctcacgag ctttagctgg 3300 atagatcaca cagtgagggc cccttgcatg gtaggcgctg tcaggatgac agcctctatg 3360 ctccgagctc tacaaatgtg gaggggagct acgatcccta agaccggttg ccccctagcc 3420 aggatccccg gttttgcatt acaggggctt gcccccccgc ctttcgccgg catgggcggt 3480 ctcggggcta ttggcggtgt ggtaggagga ggagcagcgg atggtgcgga cacgccaaac 3540 cagccgtcgg gaaacgggta gaactgacca ccgtcgggag ggatgtgggt tcagtttgga 3600 gttgccctcc caagctgaat ccgtacccgg attacaccct cggtcgcggg gacaacgtta 3660 ttaggatcaa ggacagatta agtagcttta taattagcga catcctcaac tgcgcgatgc 3720 gagcacatgg ggtgggtagc tctcgcgtgg tagttgaggt taagcaccac ccgtacaaca 3780 tggaccaccc atatgacgtc ataatgaccg ctacccctga tgtgagggga caagactgcc 3840 tggtaaagtg ccagaatgcc gtgctaaccg ctatacggaa ggccactaat agcgcacact 3900 tgcagacatg tgtcgaggat gaagtattgg actacatgtt cccggattac aacaggtgtg 3960 tgactaggcc ttctattgca agagcctatg ccgggtcagt ggccaaagtg cttacagata 4020 tagaagacaa ccctgcggat aagaagccta ccattagttt ggccttagcc gccatcttgg 4080 ctcctgagtt ccatggggga attggcgtgt acatcaatca catgaccacg ctatgcggca 4140 attggaccgg cctagtcaaa gcggtggacc tgctacacgc gcgcgcaatc atgcagcatc 4200 acttccagga tgcaggcaag ggtggggctg aagacagcgc tggtatcggg ttggcaggct 4260 tggttcgtga attgtttttg gtatattctg gatgcggaca aactggattc ttctggcctg 4320 acgtgggtca ggatgcgacg tccttggagg agattcggac catgctctca atacggataa 4380 aactctccga taggtgggcg gatctcttgg cgccggtgat atgggcaatc atgctgtctt 4440 cacgaagagg ggggggagat gccgtcaagg cggagttccc tcatctggcc tcgctattaa 4500 ataaagcctc agaagtgatg aagaggttag ggcccttcga gctaatggtc aagttaggga 4560 gtgacctaca cgagcgtgac atggttgctg atcctgctag cttcgattat gcctgcaggg 4620 tgaggcgcca tgttagttgg gtatgtgtca acattaaggc tgctcccacc agagctcagg 4680 ccaagtcgat acataagtta ttcccgccca ctagtgctac ggacgccagg cacgcgacga 4740 cgaggcccga tgccttattg tggcactata tcagcggtcc tacctgttat caggatctgg 4800 atccgaatat gaggagtgtg gcatccatcc aggcgagagt gagcgcggcg aagacgttgt 4860 tccgacacat accggttggc accaacggaa ctttggtgtc tatgatgctt ttgtctgccc 4920 tatgcactag caatggcgac gtagttatga acaactatat cgtaaataac gcgctggtca 4980 ggtccggcaa cagccagaag aagctcctca aagcgtgtag tacattcatt agaaagagct 5040 catgcgacct aacccagact aaggttcggg cggaggacgt ggccgtgcta acatactttg 5100 atttaggatt cggcaggtcc atgaatcgtt ccgactggca agaggaaatc gataaccgtg 5160 ggttcaggaa acatcacatc cagcacccac gggcgccaaa cgtgtccaag gccctagtga 5220 gtgagcttaa aacggtcgca ttcggcgaca acacgctgcc tgaccccaag ttcgagcagg 5280 cgataagggc taagttagct ggttattgtc gaaaattagt actagggaag aagaccaaag 5340 agacaatggc ccgcttttat aggcgaagga acgattggat ggcatctggc tcctctgggg 5400 ggtacaagag taagaccatg ggagagctaa ttaatggaga gggcgccggc cctatttcag 5460 tcgacaagcg cgtgtgggca gaggagcatg attttaaaca catactaaga tatatgagat 5520 ctgcccccaa agagcttgcc agggccagtg aaaagtatga gaacggcaag agccgggcaa 5580 tctatggtgt agcacccgag cactacgtca tcaacaccta tgtcactcaa ggcatggagg 5640 aaaggttaca taacattcca ggcttggaaa agggagccac tggcgtcacg gagttgggat 5700 atatcaaaaa gagatgtaat ataacggcta acgcgaggaa agagtgtact atgctcgact 5760 acgctgattt caacgttcag cattcgctca gctgccaata catcttattt gatgagatgt 5820 tgaaagcagg ggtggaggtg ggagcatgcc cagactgggt taaggcctgt tcctggttgc 5880 gtgacgcgaa gttgaatcag gaatcctatt tccctggcaa gtcccggccc gtcaagatca 5940 ctcagggaat gttctccgga acccgatcca ctgacctgat caacaccctg ttgaacctgg 6000 cttactacga ggtggccgcc gatgctgtta gtagctatgg gtactcatcc caggacgtgt 6060 accatgtgca ccaaggcgat gacgtgtggc tcagctctga taacgcagct tgggcggcaa 6120 ccctatatta cgtaatgaat gcacaagggt tcatcttcca ggacagcaag cagatgttcg 6180 gtccttcaag gggcgagtat ttgcgcgtgc tctaccactc ggaaggggcg gttgggtacc 6240 tagccagaag cttggctaat tacctccaaa ggccaattca gaataagacc gatattgggg 6300 ggcaggcttg gatggaatca atatcggaca cctgccgggt gatgcagcgt cgcggcctca 6360 gtatctatgg ggcatcagtg gtgtggcaag acgtgttggg ggcaaagggc accgtccacc 6420 tacacgaacg cgaccgcgcc aagataaaac tgccattgag ctacatagta gcgccgcggg 6480 aagcaggagg gatggggtgc ccaccgcccg gccacctagt ccaggcctcg ctcctgccgc 6540 cggctcccac agatcaacta tcttggaagg cggattggtc cgcactgccc cacagaatgg 6600 ctgacgattg gatcgagcat gtaagtagta ttgcacattc cttgcacaag gtcagcataa 6660 atgctcccgc tctgcgtgag aatatcaaac atactactca tgaaccgata ctagcctccc 6720 acggactggc cagacacaat aagaagtgga aagaacagtg gtcatcctac cgcaagactc 6780 tggcatcccc aaacaatgtg gtgacctatt cacccacccc taatctccag agcatgcgtt 6840 ctagcctctc gacagttata ccaaagaaag gcaacctcat tgcagggggc agcctggatt 6900 acataactaa gccaatagat tgtaatacca attcacctgg cagtgccggc cttctgctca 6960 acttctctga gaccatcaac aaatatgtaa ctcagagtac ctttaagagc accagtcgca 7020 cgtcaatagc acttgggcta agtaagaccg cggccatgac cttcatacta cgagaggccg 7080 tggaatactc acgagccaat gctgacctag tcagcttagc tacacagcta ataaaatacg 7140 gcaaggcaga ttggctcgac ttactgctgg caggaggaag ctccatcctc actcccctag 7200 cccagtttat ggacggtaag tttgttaacg tgttcggttc gctattacac cagatcctca 7260 tttcagccag tgtcggcaag gaaataggtt ctgtgtatga ggtgatggcc acacacaaca 7320 actacataaa caaatacgtg caggcgctca gcgattgccg ctacgcgccg caaaccatgc 7380 tttattagta aaccccccca agggtttata tgtacctacc caaacggacc catatgggtc 7440 ccggataggc gataacataa caccagttat cgcgc 7475 //