Dbfetch
ID AB698497; SV 1; linear; genomic RNA; STD; VRL; 3185 BP. XX AC AB698497; XX DT 17-AUG-2012 (Rel. 113, Created) DT 24-JUN-2018 (Rel. 137, Last updated, Version 3) XX DE Yado-kari virus 1 genes for hypothetical proteins and putative DE RNA-dependent RNA polymerase, partial and complete cds. XX KW . XX OS Yado-kari virus 1 OC Viruses; Riboviria; dsRNA viruses. XX RN [1] RP 1-3185 RA Yaegashi H., Kanematsu S.; RT ; RL Submitted (13-FEB-2012) to the INSDC. RL Contact:Hajime Yaegashi NARO, National Institute of Fruit Tree Science, RL Apple Research Station; Shimokuriyagawa, Nabeyasiki 92-24, Morioka, Iwate RL 0200123, Japan XX RN [2] RC DOI:10.1111/j.1574-6941.2012.01454.x RX PUBMED; 22808916. RA Yaegashi H., Nakamura H., Sawahata T., Sasaki A., Iwanami Y., Ito T., RA Kanematsu S.; RT "Appearance of mycovirus-like double-stranded RNAs in the white root rot RT fungus, Rosellinia necatrix, in an apple orchard"; RL FEMS Microbiol. Ecol. 83(1):49-62(2013). XX DR MD5; 957d877a0e212024fd6830483b33dc01. XX FH Key Location/Qualifiers FH FT source 1..3185 FT /organism="Yado-kari virus 1" FT /host="Rosellinia necatrix W1032" FT /strain="2-W1032/S6" FT /mol_type="genomic RNA" FT /country="Japan:Nagano, Suzaka, Nagano Fruit Tree FT Experiment Station" FT /collection_date="2009-06" FT /db_xref="taxon:1148496" FT CDS <1..410 FT /codon_start=3 FT /transl_table=1 FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:J7MDD1" FT /protein_id="BAM36405.1" FT /translation="YPFLPHVTHAVTEKIKKYLKPNPTRSNKDSSHRLFFITMCREYDI FT EDPDKYFDTYKTLAFSTLRKMKKSSDRDAFIANLYIRASRGIQRSFSEDKKLHFTSKAL FT LPSSIEENKPLLKSGLNVRKPASNPNIYLYS" FT CDS 457..1308 FT /codon_start=1 FT /transl_table=1 FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:J7M899" FT /protein_id="BAM36406.1" FT /translation="MEEDPTAYIPSYKCQPKVDRLITKSQRCVYARHDGSFNRLDSSRP FT QLMPVFTESFYYLRLVRSRTSSSLLRYTSRETSCHYYGSNCLGVIDRKQLSDTWVEKFQ FT KPPKLPSTFTIPELNSLYKHDFSHYVIKRVNPIFCNTCNLPFSKLRLNHEVGVPHDPRL FT YQCTKCFSPSLASWTYPFLPYGEVPTSNFTIPQLASKIQTSAKMDCIENNHQAHLRAKK FT AKVDGCPLCRTFQSTHDLHVIKGVPYLQSCEICRVGLAQQMAQACSQKTNVFRPTLASG FT VF" FT CDS 1271..>3184 FT /codon_start=1 FT /transl_table=1 FT /gene="RdRp" FT /product="putative RNA-dependent RNA polymerase" FT /db_xref="GOA:J7M5G0" FT /db_xref="InterPro:IPR001205" FT /db_xref="UniProtKB/TrEMBL:J7M5G0" FT /protein_id="BAM36407.1" FT /translation="MYSVQLWQVVSSKQFLKNRHHDTGFTGPGFSDKVDLVTNPAFRSF FT AEKYRHSSNPATFKLFWKTEALKESKASFMPRLIFGGSIENEIAERRSLQVFAQNLKDS FT RWNTFSRIGITNPELQKLYYYHNFHKDHVAYATDYSSQDVKLPSIITDASKRVLSRLAQ FT QQGLSPHQVNFIALARDRVKQFFAVTTTGEVFFLESGVPSGLYFGAEGNTINHRILKHY FT EDLNAQKHGFMSPSLKTVDSHYGDDFLRSMKDNSLSRIYRSNFKKIQQLSHKHTGMTVT FT TDLLHERPLDHHESAFLRRSFTKFTFADNTEQVVPIYDPIRVEQKWLQPHAIVSTPQES FT FDRSLGYLFLSGANNKLYSTISLYMNYLIKNFEIKVPGVYKDMTLDSLTRNYYTMNGRP FT SRSASLYVDYESFMPSTTKSVIPLDLVSKNILKSPIFQDDSLALQLNENSAFYSSRYID FT YNRPYTKKETFALDSVDCNPIRISPSSNASSRLLMDHVQLSRGTPLRFLGWNENSVWRA FT ITRDVTENSQPTSNQMKLLSNAVNTPISSERHINIAQIVRDLDGLDSFISPNTNTPASG FT VSKMSDSLRNSSYPMNNIEDEDDLFVASYTTMTFPPPRSAPKRDLTVDGDVEKNPGPPQ FT LLV" XX SQ Sequence 3185 BP; 891 A; 770 C; 548 G; 976 T; 0 other; attatccttt ccttccgcat gttactcatg cggtcactga aaaaattaaa aaatacctca 60 aacctaatcc cacgcgaagt aataaagata gctctcatag actcttcttc attaccatgt 120 gtagagagta cgatatagag gacccagata agtactttga tacttacaaa actctggcct 180 tttcgactct gcgcaagatg aaaaagtctt ctgaccgcga tgctttcatc gcgaatcttt 240 acattcgtgc atcacgtgga attcaacgtt cgttttctga ggataaaaaa ttacatttca 300 cttcaaaagc ccttttaccc tcttctattg aagagaacaa acctttgttg aagtcgggtc 360 tgaacgtacg caagcccgca tctaatccta atatttattt gtattcataa gtgtaatatt 420 aaagattcat cttctctttg tccagctgcg attcccatgg aagaagatcc aacagcatac 480 atcccaagct acaaatgtca acctaaggtt gacagactca ttaccaaaag ccagagatgt 540 gtgtatgccc gacacgacgg atctttcaac cgtttggatt catctagacc ccagctaatg 600 ccagtcttta ccgaatcttt ctattattta cgtctagtaa ggagtcgtac ttcctcttct 660 ttattgagat acacatcccg tgagactagt tgccattact atggtagcaa ttgtctcggt 720 gttatagaca ggaaacagtt gagcgatact tgggtcgaaa aatttcaaaa accacctaag 780 ttaccttcca ctttcactat tcctgagctt aattctcttt acaagcacga tttctcacac 840 tacgtaatta agcgtgttaa tccaatcttt tgtaacacgt gcaaccttcc tttctccaag 900 cttcgtctga accacgaagt cggggtacca catgaccctc gactttatca gtgcaccaag 960 tgcttttcac cgtcgcttgc ctcttggacc tatccattcc ttccttacgg agaagtcccc 1020 acttctaatt tcactatacc tcagcttgct tccaagatac aaacgtctgc aaagatggat 1080 tgtattgaaa ataaccacca ggctcatctt cgagccaaga aagcaaaagt tgacggttgc 1140 ccattgtgtc gtactttcca atcgacacat gatttacatg taattaaagg tgtcccttat 1200 ttgcaatcct gcgaaatttg tcgcgtagga ttagcccaac agatggctca agcctgtagc 1260 caaaaaacaa atgtattccg tccaactctg gcaagtggtg tcttctaaac aatttcttaa 1320 aaatagacat catgatactg gatttacagg cccgggattt agtgacaaag ttgatcttgt 1380 caccaatcca gcctttcgct cttttgccga aaaatatcgg cattcttcca acccagctac 1440 tttcaaactc ttctggaaaa cagaagcttt gaaggagtcc aaagcctcat tcatgccccg 1500 tctaatcttt ggcggttcaa tcgaaaatga gattgctgaa agacgctccc ttcaagtgtt 1560 tgcccagaat ttgaaagatt ctcgctggaa cacgttctct aggattggta taaccaatcc 1620 cgaacttcaa aaattgtatt attaccataa ttttcataag gatcatgttg cctatgctac 1680 agattactca tcccaagacg tcaagttgcc ttccatcatc actgacgcca gtaaacgtgt 1740 tttgagtcgt cttgctcagc agcaaggtct ttcccctcat caggttaatt tcatcgcgct 1800 agctcgcgat cgagtcaagc agttttttgc tgtgactaca actggtgagg ttttcttttt 1860 agaatctggt gttccatccg gtctttattt tggagcagag ggtaatacga ttaaccatcg 1920 tatcctaaag cactatgaag atctgaatgc tcagaaacac ggattcatgt ctccttctct 1980 caagactgtt gactcccatt atggagatga tttccttcgt tcaatgaaag acaattcttt 2040 gtcacgtatt tacaggtcta actttaagaa aattcagcag ctttcccata agcatactgg 2100 aatgactgta actactgatc tcttacatga acgcccattg gatcatcacg agtcagcatt 2160 cttacgacgc tcctttacaa aattcacatt tgccgataat actgagcaag tagtcccaat 2220 ctacgatcca atcagagttg aacagaagtg gttacaacca cacgctattg tttcgactcc 2280 tcaagaatca ttcgatagat ccttgggata cttgttcctc agcggtgcta ataataaact 2340 ctatagcacc atttctttat atatgaatta tctcattaaa aattttgaaa ttaaagtacc 2400 aggcgtttac aaggatatga ctttagattc ccttacacgt aactattaca ctatgaatgg 2460 tcgcccatct cgtagtgctt ctttatatgt agattatgag tcttttatgc cttctacaac 2520 taagagtgtg atccctctgg acttagtatc caagaacatc cttaaatctc caattttcca 2580 ggatgactct ctcgctcttc agttaaatga gaattctgct ttctattctt cacgatatat 2640 cgattacaat cgaccatata cgaagaaaga aacttttgca ctagactcag tcgattgcaa 2700 tccaatcaga atttctcctt cctctaatgc ctcttcacgt cttttgatgg accatgttca 2760 gttatctcgt ggcactcccc ttcgttttct cggttggaat gagaattcag tctggcgtgc 2820 gattactcgt gacgtcactg aaaactcaca accaacttca aatcaaatga agttgctatc 2880 gaatgctgtc aacacgccca tcagttctga gcgtcatatc aatatagctc agattgtgcg 2940 tgacctagac ggtcttgatt cttttatttc ccccaacact aatacccccg cttctggtgt 3000 gtctaagatg tcagactctc ttcgaaactc atcgtatccg atgaataata tcgaagatga 3060 agatgatctc ttcgtggcct catacacaac tatgaccttc cctcctccaa gatccgcgcc 3120 caagcgtgat ctgacagtgg atggtgatgt tgagaaaaat cctggccctc cccagttgct 3180 tgtac 3185 //