ID AB698491; SV 1; linear; genomic RNA; STD; VRL; 2254 BP. XX AC AB698491; XX DT 17-AUG-2012 (Rel. 113, Created) DT 20-DEC-2012 (Rel. 115, Last updated, Version 2) XX DE Rosellinia necatrix partitivirus 3 genomic RNA, segment: RNA 1, complete DE sequence. XX KW . XX OS Rosellinia necatrix partitivirus 3 OC Viruses; Riboviria; Partitiviridae; unclassified Partitiviridae. XX RN [1] RP 1-2254 RA Yaegashi H., Kanematsu S.; RT ; RL Submitted (13-FEB-2012) to the INSDC. RL Contact:Hajime Yaegashi NARO, National Institute of Fruit Tree Science, RL Apple Research Station; Shimokuriyagawa, Nabeyasiki 92-24, Morioka, Iwate RL 0200123, Japan XX RN [2] RC DOI:10.1111/j.1574-6941.2012.01454.x RX PUBMED; 22808916. RA Yaegashi H., Nakamura H., Sawahata T., Sasaki A., Iwanami Y., Ito T., RA Kanematsu S.; RT "Appearance of mycovirus-like double-stranded RNAs in the white root rot RT fungus, Rosellinia necatrix, in an apple orchard"; RL FEMS Microbiol. Ecol. 83(1):49-62(2013). XX DR MD5; 447bede9c6e10311ccf6c31a604e52f5. DR EuropePMC; PMC3676089; 23552428. XX FH Key Location/Qualifiers FH FT source 1..2254 FT /organism="Rosellinia necatrix partitivirus 3" FT /segment="RNA 1" FT /host="Rosellinia necatrix W1028" FT /strain="3-W1028/S2" FT /mol_type="genomic RNA" FT /country="Japan:Nagano, Suzaka, Nagano Fruit Tree FT Experiment Station" FT /collection_date="Jun-2009" FT /db_xref="taxon:1148492" FT CDS 71..2200 FT /codon_start=1 FT /transl_table=1 FT /gene="RdRp" FT /product="RNA-dependent RNA-polymerase" FT /db_xref="GOA:J7M897" FT /db_xref="UniProtKB/TrEMBL:J7M897" FT /protein_id="BAM36401.1" FT /translation="MVFSQVRDYLHELRNTLNRDWRLYRIFGETTPDPDSEQPDIDLRR FT LDKSYRQRDLEAQLTSEYKQHYTDARYAFEESDHLKGEPFEFSIPSSEPLPENRLPAPG FT IHALPIRFHKEQVVTATEQVPETGYGLHPLLEYLLSYKYPRYMEHTIKYARPLGTTDAT FT FSDFNREQTEFPPIPANTMTRILPLVCILLNAKPFLPLHWIDTFFTHMPLVTGVSYFYR FT HSYELRTHAAFSHPKEYADKQTSKGYFFNAFSEWARTVVHRIKEFGYPFSTENLSPTEI FT YDKMRTFVIQHATSIYTRNQISERLGNLKQRPIYAMDTLFLHLECMISFPLHVMARSID FT SAIMYSFETIRGGCAFMDIQAKKYKSYLCIDWSSFDQRMPWIIVDTFFTVFLPYLLIVN FT NAYHPTYEYPDYPGLTADKMYSRLFNIICFLRLWYYNCVFYVADGYAYVRRFAGIASGM FT LNTQYLDSYCNLVLMIHGLLHFGCTDEEILQICFFVMGDDNVLLTHWPLSRLNTFLNWF FT EAHALSRFGMVLSRQKSIITQIRTRIEMLGYQCNGGNPKRSIPKLVAQLCYPERGPDPR FT YMSSRAIGIAYAAAGSDPTFHNFCKDVYLTFLPYQEDLTTEHAAHRARRHIPGYFSYLF FT SHEPSFDIDLLTFPTIHDVRSRYQRWQGELDQDSKWNPSHFKFQPDYAPSNSITMSEYM FT TEHSLFFPDVPTLFT" XX SQ Sequence 2254 BP; 562 A; 710 C; 350 G; 632 T; 0 other; tctgcaaaga gcgctgcttc tttaagaaca actccaacag attttacact cgcaacaatt 60 gacacacaac atggttttct ctcaagtacg tgactacctg cacgaactcc gcaatactct 120 caaccgagac tggcgcttat accgaatctt cggcgaaacc acacccgacc ccgactccga 180 acagcctgac atcgatctcc gccgtttaga caaatcctac cgacaacgcg atcttgaagc 240 tcaactcacc tccgagtaca agcaacacta cacagacgcc cgctatgcat ttgaagaatc 300 cgaccacctc aaaggcgaac cttttgaatt ctcgattccc tcttctgaac cactccccga 360 gaaccgactc cccgctcccg gcattcatgc tcttccaata cgtttccaca aggaacaagt 420 cgtcactgca actgaacaag ttccagaaac cggatatggc ctgcaccccc tccttgaata 480 tttgctttcg tacaaatacc cacgctacat ggaacatact attaaatacg ctcgtcccct 540 cggcaccacc gacgctacat tctctgactt caatcgtgaa cagactgaat ttccgccaat 600 ccctgctaac actatgactc gcattcttcc ccttgtatgc atcctcctta acgccaaacc 660 cttccttcca cttcactgga tcgacacatt ctttacacac atgcccctcg tcactggtgt 720 ctcctatttc tatcgacact cctacgaact acgcacacat gctgccttct cacatcccaa 780 agaatacgct gacaagcaaa cctccaaagg ttactttttc aacgccttct ccgaatgggc 840 ccgcactgtc gttcatcgca taaaagaatt cggctatccc ttctctaccg aaaacctttc 900 tccaaccgaa atatatgata aaatgcgcac attcgttatt caacatgcaa cgtccatcta 960 cacacgcaat cagatctcag aacgtcttgg caacctcaag caacgtccca tctatgctat 1020 ggatactctt tttctgcacc ttgaatgcat gatctccttt ccccttcatg ttatggcacg 1080 ttccattgac tccgcaatta tgtactcctt tgaaaccatt cgtggtggct gcgccttcat 1140 ggatattcaa gccaaaaagt acaaatccta tctctgcatc gactggtcat cttttgatca 1200 acgcatgcct tggattatcg tcgacacatt ctttactgtc tttctgccct accttctcat 1260 cgtcaacaat gcatatcatc caacatatga ataccctgac taccctggtc ttacagctga 1320 caagatgtat tctcgactct ttaacatcat ttgtttcctt cgtctctggt attacaactg 1380 cgtcttttac gtcgctgatg gctacgctta cgtacgccgc ttcgctggca tcgcttctgg 1440 catgctcaac actcaatacc tcgactccta ctgtaatctt gtcctcatga tacacggtct 1500 cctccatttc ggatgcactg atgaagaaat tcttcagatc tgcttctttg ttatgggtga 1560 tgataatgtg cttctcacgc actggccgct atctcgtctc aacactttcc ttaactggtt 1620 tgaagctcac gctctctccc gctttggcat ggtcctctcc agacaaaagt caatcattac 1680 acaaattcgt acccgcatcg aaatgctcgg ctaccaatgc aatggtggaa atccaaaacg 1740 ctcaattccg aagctagttg ctcaactatg ctatcctgaa cgtggccctg atcccaggta 1800 catgtcctct cgagctatag gtatcgctta cgccgccgct ggcagtgatc ctaccttcca 1860 caatttctgc aaagacgtct acttgacttt cctcccctat caagaagacc tcaccaccga 1920 acacgctgca catagagcac gacgccacat ccctggctac ttctcgtacc tcttctctca 1980 cgaaccctcg tttgacattg atctgctcac cttccctacc atccatgatg tccgttcccg 2040 atatcaacgc tggcaaggcg aactcgacca agactcaaaa tggaacccct cccattttaa 2100 gtttcaacca gattacgctc cgtccaactc cattactatg tctgaataca tgactgaaca 2160 ttcattattc ttccctgatg tccccacact ctttacatag tttgcttata cgtataagtt 2220 ttacgtttat aggtttgttc ttttctttct ttcg 2254 //