ID AB697826; SV 1; linear; viral cRNA; STD; VRL; 7019 BP. XX AC AB697826; XX DT 25-APR-2012 (Rel. 112, Created) DT 02-JUL-2012 (Rel. 113, Last updated, Version 2) XX DE Fig mosaic virus RdRp gene for RNA-dependent RNA polymerase, complete cds, DE isolate: JS1. XX KW . XX OS Fig mosaic emaravirus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes; OC Bunyavirales; Fimoviridae; Emaravirus. XX RN [1] RP 1-7019 RA Namba S., Ishikawa K., Maejima K., Komatsu K., Yamaji Y.; RT ; RL Submitted (09-FEB-2012) to the INSDC. RL Contact:Shigetou Namba The University of Tokyo, Graduate School of RL Agricultural and Life Sciences; Yayoi 1-1-1, Bunkyo-ku, Tokyo 113-8657, RL Japan XX RN [2] RC DOI:10.1099/vir.0.042663-0 RX DOI; 10.1099/vir.0.042663-0. RX PUBMED; 22513386. RA Ishikawa K., Maejima K., Komatsu K., Kitazawa Y., Hashimoto M., Takata D., RA Yamaji Y., Namba S.; RT "Identification and characterization of two novel genomic RNA segments of RT fig mosaic virus, RNA5 and RNA6"; RL J. Gen. Virol. 93(Pt 7):1612-1619(2012). XX DR MD5; 4c372de0d34ed72b66ad16465c5cdd01. XX FH Key Location/Qualifiers FH FT source 1..7019 FT /organism="Fig mosaic emaravirus" FT /segment="1" FT /host="Ficus carica cv. Houraishi" FT /isolate="JS1" FT /mol_type="viral cRNA" FT /country="Japan:Shimane" FT /collection_date="2010" FT /db_xref="taxon:1980427" FT CDS 44..6937 FT /codon_start=1 FT /transl_table=1 FT /gene="RdRp" FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:I2FFK0" FT /db_xref="InterPro:IPR007099" FT /db_xref="InterPro:IPR007322" FT /db_xref="UniProtKB/TrEMBL:I2FFK0" FT /protein_id="BAM13785.1" FT /translation="MEAKKGEIFESAISKIRSGDALPPDLMSKFLHIAGKTLKGYTITS FT KKRNIEKIYKQCTSDVHFHKDLVSLSEGILHTPPNQSQIDIVATLIGLLELSRHDLLIL FT CINELLQNQGYTIMGYDVPIKDVFPEIDSILTPDIFFTDGYDYYILEVKVRGKKTDLSI FT YYNRYKSVVDGSQKHIKVSVFNVSRSGYIEMGDYKISNLINIDPSTIEDITYCIDLCQN FT LREKYGRYPEFGFYMQDGMLADSSEPFIESGFKQMVFEHNNYEEISSLFGSKWNEIIND FT TDNISLISNPEDTIEKLLDAQKVLYQDCSDRYIEFQSHLEKNYMNTNSYNKTYLNDCNL FT SKILDKKNESLYNIVDTYKPSIYIPIAKTVFLDQFGFSRLDFYKSAFIDIQERGDSYTK FT SVINLVNTIFNSVSIDLLVKKNDEIDPETYKDVLTPDFCKYINDTSNKFKKIATVSNIT FT SDTSILNNNAFSINHHVDKYMKENICGFQRKHYDVDVQKKSCLSIKNSEDDALELLKLM FT GEIFNSKHYEGVYANDLVDIEVDNMNSHVCNLPKNCKTKYLDHLYSQHNIFKALISLNT FT VNSHKFRLIQTADPCTILIMLPNADTLKSAPLRYFTLTIIDKKDNTSYHANKLLGIAHE FT LLIGRNYNIILSKVISLDVTRLKLLNHSFGKYCLIMSYYSTIKKDLRHQIHFMVWILCQ FT FITISSLSITDTYKNFVMAIYSDYSNIDNLIDDKLESRPTTLGHIVILQRCFHGLLQAS FT TQLKVINKNKNNEEIDERGDLIETGFNSNLSLKLPISGISVNNPREIIHEAFMLFYLGN FT KGLHGSPQELLNLYYTPYKFEQEYTDVIQRYKTILQEDGNISNMSISYDVMKKTSLAAY FT SNIYNKKENIRQSICSELSINKPLLALKQFSSTKSMVSNTKQVEIELPKKLPDNLDLYG FT LENIISNCKIDEDMEFMRFINSEIYRINSKRLKNEMSSSTREEKKEVTLLPEIYIETKK FT GVKFLRIKRHEYTRLINGDYIRQNNAKVFDEFYKLSEEYELVSLKDAYSKLIHDDELLI FT RIFYKDQRTADDREIYTGNAQTRLCLYPIEKTYKAICKHIPGEAITISGDQKQKKLLEQ FT RLQLIKEKKQKIKDKKWAEIYSVSSDASKWSARDVFLKFIITISVNPYLHPDEKWFLLY FT LCMTYYTKKIVFTDTIFNKMVDLADKDKHGKYEFMTEDFTQNYFTVRSNWLQGNLNMIS FT SFVHHCSTLYTETMLKILSDKNSLECSMTSMVHSDDSTYDFLICRDKKSKNRYVKEENI FT GKLIISLITYSNRFHCITLNEKKTYISTFYKEFLSTIIVGNELFFFYLADLLPLTSDTS FT YASPLQDLASYSGYINNSFSHACPREMIQTAIILINHLTLSTYNMQYTSDKNPRLNIQS FT TDLPIQIYPRYKVPIEMAGMIPYYSADAFNILNDIVLKLGYNDKLQSELVEDILTEELI FT SDYLNIIKKHTPMIVKYIKSCILCMDYSQYERDDADPYNIIDYDLSQKSIINVISLNKG FT QRLKKTYTYKKYLESETNVRLISAIHPEWCVIKPTDPDLIKSNILQNYTNPNFRDGLIF FT STPAIDYGRRVISSNKNMYTISSHIMEKDKAKNIKTVYNDLNEKIDGVEITAKDLQRYL FT SLYLLSDKKISMAIQVFFSKIETVTMARPSYNKVVQPRSIYSEDFGRYSNNSLIESLLT FT SRYCKIATVDPKVEKFVDVSDYVLERIGDIKLYESPEDIDNDYINYYQFKYPHSDEIML FT DVEPVSDLGDLELKVYKNKLKFMSLLVKYYNDIKKTIETPNYNIPNYPSPSSIIMTIDS FT LLKKDEISTKVYLSNVKSIKYDDYLLTRYGMYAHNDFHIKYKLGYKVKIASSTKISHTL FT QTYKDTYEPVAFVTKLISRNLELFTSLKDNEDFVTGHYKFNDMINTLQNSRDINSSALL FT LMLDKIPNSRFMITLLNDNRVYNHWLIPTNSLQEDPGASLAYYMCQGNIMKVRTFTRGG FT SIVFTMTYYKYVNRDLGALVNIKKKISMDYVELLRKSLVTNRVEPTSLYDTYNINEYGR FT YTEYKGPRVFNVAQINYAKILDIKPAYTEIDDQVKLVLNIGTNEDHFTFDIRLRTYIDD FT EYYLNCLLDNLHIERENILGYLCEGTFFHRYPDYLKRILATLGPNQLVSLMSNYTDSDC FT ITDNIDVNRYGFLMEISNYFRDKNNIYMAELCETLEIVAMSTNVNILNVRNPEKFINNC FT NKIKLHPLCHEYVIHKYRADEEAPYYRLFRLVMKYRYNKSPVEKIILFIILIFRFYIHE FT YIDVEAEFEY" XX SQ Sequence 7019 BP; 2687 A; 994 C; 1104 G; 2234 T; 0 other; agtagtgaac tccctttatt aaacaaaaaa tcaaaaatat ccaatggaag ctaaaaaagg 60 tgaaatattc gagagtgcga tcagcaaaat aagatctgga gatgcattac cacctgatct 120 catgagtaaa tttttgcaca tagctggtaa gacactgaag ggttacacaa tcacatctaa 180 aaaaagaaac attgaaaaga tctataagca gtgtactagt gatgttcact tccataaaga 240 tcttgtatca ctttcagaag gaatattaca tacaccacct aatcagagcc aaattgatat 300 agttgccact ctaattggtt tacttgagtt atctaggcat gatctgctga tcttatgcat 360 taatgaatta ctgcagaatc aaggttatac catcatgggc tatgatgtac caatcaaaga 420 tgtgttccct gaaattgata gcatcttaac acctgatata ttcttcacag atggttacga 480 ttattatata ttagaggtta aagtcagagg aaagaaaact gatttgtcca tttattataa 540 tagatataaa tcagttgttg atggttcaca aaagcatatt aaagttagtg ttttcaatgt 600 ttcaagatct ggttacattg agatgggtga ttacaagatc tcaaatctta ttaatatcga 660 tccatctacc attgaagata tcacatattg catagacttg tgccagaacc taagagaaaa 720 gtatggtaga tatcctgaat ttggatttta tatgcaagat ggtatgcttg ctgatagtag 780 tgaaccattc attgaatctg gttttaaaca gatggttttt gaacataaca attatgaaga 840 gatctcaagc ctatttggta gcaaatggaa tgaaattata aatgacactg ataatataag 900 tttaatatct aaccctgaag atactattga gaagttatta gatgctcaaa aggtgttata 960 tcaagattgt tcagatagat acattgaatt ccaatctcat ttagaaaaaa attatatgaa 1020 tactaattct tataataaga catacctaaa tgattgtaat ttatcaaaaa tattagataa 1080 aaagaatgaa tctttatata acattgttga cacatataaa ccatctattt acataccaat 1140 tgcaaaaaca gtattccttg atcaatttgg tttttcaagg ttagattttt ataaatcagc 1200 atttatagat attcaagaga gaggagactc ttacaccaaa tctgttatca acctggttaa 1260 tactatattt aatagcgtct caattgattt acttgttaaa aaaaatgatg agatagatcc 1320 agaaacttat aaagatgttc tgacacctga tttctgtaaa tacataaatg atacaagcaa 1380 taagttcaaa aagattgcaa cagtatctaa cataacaagt gacacaagca ttttgaataa 1440 taatgcattt tcgattaacc atcatgtgga taaatatatg aaagaaaata tttgtggatt 1500 tcagaggaaa cactatgatg tagatgtcca aaaaaagagc tgcttatcaa ttaaaaatag 1560 tgaagatgat gcattagaac tattgaagtt aatgggagag atatttaata gtaagcatta 1620 tgaaggagta tatgcaaatg atctagtaga tattgaggtt gataacatga atagtcatgt 1680 atgtaacctt ccaaagaatt gcaaaactaa atatttagat catctttaca gccagcataa 1740 tatattcaaa gctttaatat cgttgaacac agttaattct cataaattta gattgattca 1800 gacagcagat ccatgtacaa tattaatcat gcttccaaat gcagacactc tgaaatctgc 1860 accacttagg tatttcacac ttacaataat tgacaaaaag gataatacaa gttaccatgc 1920 aaacaagcta ttgggaatag cgcatgagtt attaatcggt cggaactata atataatatt 1980 atctaaagtt ataagcttag atgttacaag acttaagcta ttaaatcact catttggcaa 2040 atattgttta attatgtctt actattcaac cataaagaaa gatttaagac atcaaatcca 2100 ttttatggta tggatattat gccaatttat cactatatca tcactgagca taactgacac 2160 ctataagaat tttgttatgg ctatatattc tgattattca aatattgaca atctgattga 2220 tgacaagtta gaatctaggc ctacaacatt agggcatata gtaatcttac aaaggtgttt 2280 ccatggttta ttgcaggctt ctacgcaact taaggtaatt aacaaaaaca aaaataacga 2340 agagattgat gagaggggtg atttgatcga aactggattt aatagcaatt tatcattaaa 2400 gttgccaata tcaggtatta gtgtcaataa tcctagagag atcatacatg aagcatttat 2460 gttattttat ctaggtaata aaggccttca tggttcccca caggagttat taaatttgta 2520 ctacacacca tacaaatttg aacaagaata tactgatgta atacagagat ataaaactat 2580 tctacaagaa gatggaaata tttctaatat gtcaatctca tatgatgtta tgaagaaaac 2640 atcattagca gcttattcaa atatttataa taaaaaagaa aacatcaggc aatctatatg 2700 tagtgaatta agcattaata agccattact agcattgaaa caattctcta gcacaaaatc 2760 tatggtgtcc aatacaaagc aggtcgagat agaattgcca aaaaaattac ctgataatct 2820 agatctatat gggttagaga atattatatc aaactgcaaa attgatgaag acatggaatt 2880 tatgagattt ataaattcag aaatttacag aattaattca aagagattaa aaaatgaaat 2940 gagtagctcc acaagagaag aaaaaaagga agttacttta ttacctgaga tatatataga 3000 aacaaagaaa ggtgtgaagt ttttaaggat aaagaggcat gaatacacta gactgatcaa 3060 tggtgattat attagacaga acaatgcaaa ggtttttgat gaattttata aattatctga 3120 agagtatgag ctcgtctcac tcaaggacgc atactctaag ttaatacatg atgatgaatt 3180 gttgattcga atattttata aagatcagag aactgctgat gatagagaaa tatatacagg 3240 caatgctcaa actagactct gtttatatcc aatagaaaaa acatataagg caatttgtaa 3300 acatatccca ggtgaagcaa taacaatcag cggtgaccaa aagcaaaaaa aactactgga 3360 gcaaagacta cagctgatca aagaaaaaaa acaaaaaatt aaagataaaa aatgggctga 3420 aatttattct gtatcctcag atgcatcaaa atggtctgct agagatgtgt tcttaaaatt 3480 cataatcaca atatctgtga atccatatct ccaccctgat gaaaaatggt ttttattata 3540 tctgtgtatg acctattaca ccaaaaaaat tgtgttcacc gatactatat tcaataaaat 3600 ggttgatcta gcagataaag ataaacatgg gaaatatgaa tttatgactg aagattttac 3660 acaaaattat tttacagtaa ggagcaattg gttacagggt aatcttaata tgatatcatc 3720 atttgtccat cactgctcca cactgtacac tgagaccatg ttaaagattt tatctgataa 3780 gaattctttg gagtgctcta tgacatctat ggtccattct gatgattcaa catatgattt 3840 tctaatctgt agagataaaa aatcaaagaa tagatatgtg aaagaagaaa acattggtaa 3900 actcattata tctttgatta catactcaaa tagatttcat tgcataacac taaatgaaaa 3960 aaagacatat attagtacat tctataaaga gtttctctct acaattatag ttggtaatga 4020 actattcttc ttttatttag ctgatttatt accattgaca tcagacacaa gttatgcctc 4080 accattgcag gatttagcat catattctgg ttatataaat aattcctttt cacatgcttg 4140 cccaagagag atgatccaaa cagccattat actgatcaat catttgacgt tatccactta 4200 taacatgcaa tacacatctg ataaaaatcc aaggttgaat atacaatcta ctgatttacc 4260 aatccagata taccctcgtt ataaagttcc aattgaaatg gctggtatga taccctatta 4320 ctcagcagat gcattcaata tcctcaatga tatagtattg aaattaggtt acaatgacaa 4380 attgcagtca gaactcgtgg aagatatttt gactgaagaa ctcattagtg attatctcaa 4440 cataataaaa aaacatacac caatgattgt taaatatatc aaatcatgta tcttgtgtat 4500 ggattactca cagtatgaaa gggatgatgc agatccatat aatataatag attatgattt 4560 gagtcaaaaa tctatcatta atgttattag tcttaataaa ggccaacgat taaagaaaac 4620 ttatacatac aagaaatatt tagaatcaga aactaatgta cgattgatat ctgctataca 4680 tcctgaatgg tgtgtgataa aaccaactga cccagattta attaagtcaa atatattaca 4740 aaattataca aatcctaatt ttagagatgg attaatattt tccactcctg caattgatta 4800 tggtcgtaga gttattagtt caaacaagaa tatgtatacc ataagctcac atattatgga 4860 aaaagataaa gcaaaaaata taaaaacagt atacaatgat ctaaatgaaa aaatagatgg 4920 agttgagata acagctaagg atctacaaag atatctaagc ctttatctgt taagtgacaa 4980 aaaaatctct atggctatac aagtattttt ctctaagata gagacagtga caatggccag 5040 accatcatat aacaaggttg tacagccaag aagcatatat tctgaagact ttggtaggta 5100 ctctaataac tcattgatag aatctctttt aacttcaaga tattgtaaga tagctacagt 5160 tgatccaaaa gttgaaaagt ttgttgatgt tagtgattat gttttggaaa gaattggtga 5220 tattaaacta tatgaatcac cagaagacat tgataatgat tacatcaact actaccaatt 5280 taaatatcct cattctgatg agattatgtt ggatgttgag cctgtttctg atttaggtga 5340 tcttgaactt aaagtttaca aaaacaagtt gaagttcatg tcattgcttg tgaagtacta 5400 taatgatata aagaaaacta ttgaaactcc caattataat attcccaact acccatctcc 5460 atcttctata ataatgacaa tagattcatt gctgaaaaaa gatgagatca gcactaaagt 5520 gtacttatca aatgtaaaat ctattaagta tgatgattat ttgttgacta gatatggtat 5580 gtatgcccat aatgattttc acattaagta caagttaggc tataaagtta aaattgcatc 5640 tagtacaaag atatcacaca cattgcaaac atataaagat acatatgaac cagtagcatt 5700 tgtcaccaaa ttaatatcta gaaatctgga attatttact tcacttaaag acaatgaaga 5760 ttttgttaca ggacattata aatttaatga tatgataaac acacttcaga acagtcgaga 5820 tatcaatagc agtgcattat tattaatgtt ggataaaata ccaaattcta gattcatgat 5880 cacactactt aatgataata gggtttataa tcactggctg ataccaacaa atagtttaca 5940 agaagaccct ggtgcttctt tagcttatta catgtgtcag ggtaatataa tgaaagttag 6000 aacctttacc agaggtggtt ccatagtatt tacaatgact tactacaagt atgtaaaccg 6060 agaccttggt gcacttgtca atattaaaaa gaagatatca atggattatg ttgaattgtt 6120 gaggaaatct ttggtcacaa atagagttga accaacatct ttgtatgaca cttacaatat 6180 aaatgaatat ggtaggtata ctgagtataa aggtccaagg gtatttaatg ttgcacagat 6240 caattatgct aaaatattag acattaaacc agcttatact gaaattgatg atcaagtaaa 6300 gcttgtttta aatattggaa ccaatgaaga tcacttcaca tttgatatac gtttacgtac 6360 atatattgat gatgagtatt atttgaattg tttgttagac aatttacaca tagagcgtga 6420 aaatattcta ggctatctat gtgaaggtac attttttcat aggtatcctg attatcttaa 6480 gcgaattctt gctacacttg gaccaaatca acttgtatct ttgatgtcta attatactga 6540 ttcagattgt ataactgata acatagatgt aaatcgatat gggttcttga tggagattag 6600 caattacttc agagataaaa ataatatata tatggcagaa ttgtgtgaga cattagagat 6660 tgtagcaatg agcactaatg tgaacatatt aaatgttaga aaccctgaaa aatttataaa 6720 caactgcaat aaaattaagc tccatccatt atgccatgaa tatgtgatac ataaatatcg 6780 tgcagatgaa gaagcaccat attatagatt atttagatta gttatgaaat acagatataa 6840 caagagccct gtagagaaaa tcattctatt catcatcttg atatttagat tctatattca 6900 tgaatacatc gatgttgaag ctgagtttga atattgatta atcttggatt tgtgtataac 6960 ctttatgctt tttattaatt ttttaataga tttatatata ttaaagggag aacactact 7019 //